Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:44:04 (943): wrapper (7.7.26015): starting
22:44:04 (943): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 22:44:04] Arguments: --nthreads 8
[2025-11-21 22:44:04] Threads: 8
[2025-11-21 22:44:04] Checking for CVMFS
[2025-11-21 22:44:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 22:44:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 22:44:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 22:44:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 22:44:05] 2.11.2.0 25379 278676 134760 153144 3 55 22869903 25165824 4147 130560 3 140181141 99.887 79018699 3077 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-21 22:44:05] CVMFS is ok
[2025-11-21 22:44:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 22:44:05] Checking for apptainer binary...
[2025-11-21 22:44:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 22:44:05] Running /usr/bin/apptainer --version
[2025-11-21 22:44:05] apptainer version 1.3.2-1.el7
[2025-11-21 22:44:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 22:44:07] cg-vwn336.simple-grid.lan
[2025-11-21 22:44:07] apptainer works
[2025-11-21 22:44:07] Set ATHENA_PROC_NUMBER=8
[2025-11-21 22:44:07] Set ATHENA_CORE_NUMBER=8
[2025-11-21 22:44:07] Starting ATLAS job with PandaID=6891597207
[2025-11-21 22:44:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 23:54:30]  *** The last 200 lines of the pilot log: ***
[2025-11-22 23:54:31] 2025-11-22 22:53:47,258 | INFO     | monitor loop #6017: job 0:6891597207 is in state 'finished'
[2025-11-22 23:54:31] 2025-11-22 22:53:47,258 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:54:31] 2025-11-22 22:53:48,767 | INFO     | time since job start (90557s) is within the limit (172800.0s)
[2025-11-22 23:54:31] 2025-11-22 22:53:49,764 | INFO     | monitor loop #6018: job 0:6891597207 is in state 'finished'
[2025-11-22 23:54:31] 2025-11-22 22:53:49,764 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:54:31] 2025-11-22 22:53:50,776 | INFO     | time since job start (90559s) is within the limit (172800.0s)
[2025-11-22 23:54:31] 2025-11-22 22:53:52,269 | INFO     | monitor loop #6019: job 0:6891597207 is in state 'finished'
[2025-11-22 23:54:31] 2025-11-22 22:53:52,269 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:54:31] 2025-11-22 22:53:52,782 | INFO     | time since job start (90561s) is within the limit (172800.0s)
[2025-11-22 23:54:31] 2025-11-22 22:53:54,773 | INFO     | monitor loop #6020: job 0:6891597207 is in state 'finished'
[2025-11-22 23:54:31] 2025-11-22 22:53:54,773 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:54:31] 2025-11-22 22:53:54,788 | INFO     | time since job start (90563s) is within the limit (172800.0s)
[2025-11-22 23:54:31] 2025-11-22 22:53:54,957 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 23:54:31] 2025-11-22 22:53:54,958 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-22 23:54:31] 2025-11-22 22:53:54,960 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6891597207/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 23:54:31] 2025-11-22 22:53:54,961 | INFO     | extracted standard info from prmon json
[2025-11-22 23:54:31] 2025-11-22 22:53:54,961 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 23:54:31] 2025-11-22 22:53:54,961 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 23:54:31] 2025-11-22 22:53:54,991 | INFO     | fitting pss+swap vs Time
[2025-11-22 23:54:31] 2025-11-22 22:53:54,995 | INFO     | sum of square deviations: 1009305386317.6733
[2025-11-22 23:54:31] 2025-11-22 22:53:55,064 | INFO     | sum of deviations: 2790316650239.4746
[2025-11-22 23:54:31] 2025-11-22 22:53:55,064 | INFO     | mean x: 1763806695.85695
[2025-11-22 23:54:31] 2025-11-22 22:53:55,064 | INFO     | mean y: 2858209.624831309
[2025-11-22 23:54:31] 2025-11-22 22:53:55,064 | INFO     | intersect: -4873346017.531132
[2025-11-22 23:54:31] 2025-11-22 22:53:55,066 | INFO     | chi2: 14.200325811062482
[2025-11-22 23:54:31] 2025-11-22 22:53:55,069 | INFO     | sum of square deviations: 999124776210.9338
[2025-11-22 23:54:31] 2025-11-22 22:53:55,162 | INFO     | sum of deviations: 3275931289892.069
[2025-11-22 23:54:31] 2025-11-22 22:53:55,162 | INFO     | mean x: 1763806543.3615437
[2025-11-22 23:54:31] 2025-11-22 22:53:55,163 | INFO     | mean y: 2865482.63845633
[2025-11-22 23:54:31] 2025-11-22 22:53:55,163 | INFO     | intersect: -5780305130.572907
[2025-11-22 23:54:31] 2025-11-22 22:53:55,165 | INFO     | chi2: 11.062044381714152
[2025-11-22 23:54:31] 2025-11-22 22:53:55,165 | INFO     | current chi2=11.062044381714152 (change=22.100066372445585 %)
[2025-11-22 23:54:31] 2025-11-22 22:53:55,165 | INFO     | right removable region: 1476
[2025-11-22 23:54:31] 2025-11-22 22:53:55,167 | INFO     | sum of square deviations: 999123549500.9336
[2025-11-22 23:54:31] 2025-11-22 22:53:55,241 | INFO     | sum of deviations: 2340048265232.0376
[2025-11-22 23:54:31] 2025-11-22 22:53:55,241 | INFO     | mean x: 1763806848.3615437
[2025-11-22 23:54:31] 2025-11-22 22:53:55,242 | INFO     | mean y: 2864951.127285037
[2025-11-22 23:54:31] 2025-11-22 22:53:55,242 | INFO     | intersect: -4128148833.678876
[2025-11-22 23:54:31] 2025-11-22 22:53:55,244 | INFO     | chi2: 11.797200041419089
[2025-11-22 23:54:31] 2025-11-22 22:53:55,244 | INFO     | current chi2=11.797200041419089 (change=16.92303262345774 %)
[2025-11-22 23:54:31] 2025-11-22 22:53:55,244 | INFO     | left removable region: 10
[2025-11-22 23:54:31] 2025-11-22 22:53:55,246 | INFO     | sum of square deviations: 976966922239.5913
[2025-11-22 23:54:31] 2025-11-22 22:53:55,335 | INFO     | sum of deviations: 2813851938061.1924
[2025-11-22 23:54:31] 2025-11-22 22:53:55,336 | INFO     | mean x: 1763806817.8683493
[2025-11-22 23:54:31] 2025-11-22 22:53:55,336 | INFO     | mean y: 2875869.1357435198
[2025-11-22 23:54:31] 2025-11-22 22:53:55,336 | INFO     | intersect: -5077225739.06103
[2025-11-22 23:54:31] 2025-11-22 22:53:55,338 | INFO     | chi2: 7.728068921846365
[2025-11-22 23:54:31] 2025-11-22 22:53:55,338 | INFO     | current memory leak: 2.88 B/s (using 1466 data points, chi2=7.73)
[2025-11-22 23:54:31] 2025-11-22 22:53:55,343 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-22 23:54:31] 2025-11-22 22:53:55,344 | INFO     | ..............................
[2025-11-22 23:54:31] 2025-11-22 22:53:55,344 | INFO     | . Timing measurements:
[2025-11-22 23:54:31] 2025-11-22 22:53:55,344 | INFO     | . get job = 0 s
[2025-11-22 23:54:31] 2025-11-22 22:53:55,344 | INFO     | . initial setup = 2 s
[2025-11-22 23:54:31] 2025-11-22 22:53:55,344 | INFO     | . payload setup = 12 s
[2025-11-22 23:54:31] 2025-11-22 22:53:55,345 | INFO     | . stage-in = 0 s
[2025-11-22 23:54:31] 2025-11-22 22:53:55,345 | INFO     | . payload execution = 90412 s
[2025-11-22 23:54:31] 2025-11-22 22:53:55,345 | INFO     | . stage-out = 6 s
[2025-11-22 23:54:31] 2025-11-22 22:53:55,345 | INFO     | . log creation = 2 s
[2025-11-22 23:54:31] 2025-11-22 22:53:55,345 | INFO     | ..............................
[2025-11-22 23:54:31] 2025-11-22 22:53:55,489 | INFO     | 
[2025-11-22 23:54:31] 2025-11-22 22:53:55,489 | INFO     | job summary report
[2025-11-22 23:54:31] 2025-11-22 22:53:55,489 | INFO     | --------------------------------------------------
[2025-11-22 23:54:31] 2025-11-22 22:53:55,489 | INFO     | PanDA job id: 6891597207
[2025-11-22 23:54:31] 2025-11-22 22:53:55,490 | INFO     | task id: 47493068
[2025-11-22 23:54:31] 2025-11-22 22:53:55,490 | INFO     | errors: (none)
[2025-11-22 23:54:31] 2025-11-22 22:53:55,490 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 23:54:31] 2025-11-22 22:53:55,490 | INFO     | pilot state: finished 
[2025-11-22 23:54:31] 2025-11-22 22:53:55,490 | INFO     | transexitcode: 0
[2025-11-22 23:54:31] 2025-11-22 22:53:55,490 | INFO     | exeerrorcode: 0
[2025-11-22 23:54:31] 2025-11-22 22:53:55,490 | INFO     | exeerrordiag: 
[2025-11-22 23:54:31] 2025-11-22 22:53:55,490 | INFO     | exitcode: 0
[2025-11-22 23:54:31] 2025-11-22 22:53:55,490 | INFO     | exitmsg: OK
[2025-11-22 23:54:31] 2025-11-22 22:53:55,490 | INFO     | cpuconsumptiontime: 338380 s
[2025-11-22 23:54:31] 2025-11-22 22:53:55,490 | INFO     | nevents: 1000
[2025-11-22 23:54:31] 2025-11-22 22:53:55,491 | INFO     | neventsw: 0
[2025-11-22 23:54:31] 2025-11-22 22:53:55,491 | INFO     | pid: 11276
[2025-11-22 23:54:31] 2025-11-22 22:53:55,491 | INFO     | pgrp: 11276
[2025-11-22 23:54:31] 2025-11-22 22:53:55,491 | INFO     | corecount: 8
[2025-11-22 23:54:31] 2025-11-22 22:53:55,491 | INFO     | event service: False
[2025-11-22 23:54:31] 2025-11-22 22:53:55,491 | INFO     | sizes: {0: 2298625, 1: 2298824, 9: 2299086, 12: 2299114, 90428: 2362788, 90429: 2362787, 90437: 2371965, 90439: 2372021, 90544: 2372267}
[2025-11-22 23:54:31] 2025-11-22 22:53:55,491 | INFO     | --------------------------------------------------
[2025-11-22 23:54:31] 2025-11-22 22:53:55,491 | INFO     | 
[2025-11-22 23:54:31] 2025-11-22 22:53:55,492 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-11-22 23:54:31] 2025-11-22 22:53:55,960 | INFO     | PID=4766 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-22 23:54:31] 2025-11-22 22:53:55,961 | INFO     | .. there are 9 such processes running
[2025-11-22 23:54:31] 2025-11-22 22:53:56,001 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 23:54:31] 2025-11-22 22:53:56,002 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 23:54:31] 2025-11-22 22:53:56,002 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 23:54:31] 2025-11-22 22:53:56,002 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 23:54:31] 2025-11-22 22:53:56,002 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 23:54:31] 2025-11-22 22:53:56,002 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 23:54:31] 2025-11-22 22:53:56,002 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 23:54:31] 2025-11-22 22:53:56,002 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 23:54:31] 2025-11-22 22:53:56,002 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 23:54:31] 2025-11-22 22:53:56,002 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 23:54:31] 2025-11-22 22:53:56,002 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 23:54:31] 2025-11-22 22:53:56,003 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 23:54:31] 2025-11-22 22:53:56,003 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 23:54:31] 2025-11-22 22:53:56,003 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 23:54:31] 2025-11-22 22:53:56,003 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 23:54:31] 2025-11-22 22:53:56,003 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 23:54:31] 2025-11-22 22:53:56,003 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 23:54:31] 2025-11-22 22:53:56,003 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 23:54:31] 2025-11-22 22:53:56,003 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 23:54:31] 2025-11-22 22:53:56,003 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 23:54:31] 2025-11-22 22:53:56,004 | INFO     | job 6891597207 has completed (purged errors)
[2025-11-22 23:54:31] 2025-11-22 22:53:56,004 | INFO     | overall cleanup function is called
[2025-11-22 23:54:31] 2025-11-22 22:53:57,028 | INFO     | --- collectZombieJob: --- 10, [11276]
[2025-11-22 23:54:31] 2025-11-22 22:53:57,028 | INFO     | zombie collector waiting for pid 11276
[2025-11-22 23:54:31] 2025-11-22 22:53:57,028 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 23:54:31] 2025-11-22 22:53:57,028 | INFO     | collected zombie processes
[2025-11-22 23:54:31] 2025-11-22 22:53:57,028 | INFO     | will attempt to kill all subprocesses of pid=11276
[2025-11-22 23:54:31] 2025-11-22 22:53:57,157 | INFO     | process IDs to be killed: [11276] (in reverse order)
[2025-11-22 23:54:31] 2025-11-22 22:53:58,319 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 23:54:31] 2025-11-22 22:53:58,319 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 23:54:31] 2025-11-22 22:53:58,325 | INFO     | did not find any defunct processes belonging to 11276
[2025-11-22 23:54:31] 2025-11-22 22:53:58,329 | INFO     | did not find any defunct processes belonging to 11276
[2025-11-22 23:54:31] 2025-11-22 22:53:58,357 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 23:54:31] 2025-11-22 22:53:58,358 | INFO     | ready for new job
[2025-11-22 23:54:31] 2025-11-22 22:53:58,358 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 23:54:31] 2025-11-22 22:53:58,364 | INFO     | ***************************************
[2025-11-22 23:54:31] 2025-11-22 22:53:58,365 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 23:54:31] 2025-11-22 22:53:58,365 | INFO     | ***************************************
[2025-11-22 23:54:31] 2025-11-22 22:53:58,365 | INFO     | 
[2025-11-22 23:54:31] 2025-11-22 22:53:58,365 | INFO     | pilot is running in a VM
[2025-11-22 23:54:31] 2025-11-22 22:53:58,366 | INFO     | architecture information:
[2025-11-22 23:54:31] 2025-11-22 22:53:58,380 | INFO     | executing command: cat /etc/os-release
[2025-11-22 23:54:31] 2025-11-22 22:53:58,629 | INFO     | cat /etc/os-release:
[2025-11-22 23:54:31] NAME="CentOS Linux"
[2025-11-22 23:54:31] VERSION="7 (Core)"
[2025-11-22 23:54:31] ID="centos"
[2025-11-22 23:54:31] ID_LIKE="rhel fedora"
[2025-11-22 23:54:31] VERSION_ID="7"
[2025-11-22 23:54:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 23:54:31] ANSI_COLOR="0;31"
[2025-11-22 23:54:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 23:54:31] HOME_URL="https://www.centos.org/"
[2025-11-22 23:54:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 23:54:31] 
[2025-11-22 23:54:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 23:54:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 23:54:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 23:54:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 23:54:31] 
[2025-11-22 23:54:31] 2025-11-22 22:53:58,637 | INFO     | ***************************************
[2025-11-22 23:54:31] 2025-11-22 22:53:59,141 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-11-22 23:54:31] 2025-11-22 22:53:59,385 | INFO     | sufficient remaining disk space (495152267264 B)
[2025-11-22 23:54:31] 2025-11-22 22:53:59,385 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 23:54:31] 2025-11-22 22:53:59,385 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 23:54:31] 2025-11-22 22:53:59,385 | INFO     | update_server=False
[2025-11-22 23:54:31] 2025-11-22 22:53:59,385 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 23:54:31] 2025-11-22 22:53:59,386 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 23:54:31] 2025-11-22 22:53:59,540 | INFO     | all data control threads have been joined
[2025-11-22 23:54:31] 2025-11-22 22:53:59,787 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 23:54:31] 2025-11-22 22:53:59,787 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 23:54:31] 2025-11-22 22:53:59,787 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 23:54:31] 2025-11-22 22:53:59,787 | INFO     | will abort loop
[2025-11-22 23:54:31] 2025-11-22 22:54:00,185 | INFO     | all job control threads have been joined
[2025-11-22 23:54:31] 2025-11-22 22:54:00,281 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 23:54:31] 2025-11-22 22:54:00,346 | INFO     | all payload control threads have been joined
[2025-11-22 23:54:31] 2025-11-22 22:54:00,391 | INFO     | [job] retrieve thread has finished
[2025-11-22 23:54:31] 2025-11-22 22:54:00,506 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 23:54:31] 2025-11-22 22:54:00,510 | INFO     | [payload] failed_post thread has finished
[2025-11-22 23:54:31] 2025-11-22 22:54:00,546 | INFO     | [data] control thread has finished
[2025-11-22 23:54:31] 2025-11-22 22:54:00,587 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 23:54:31] 2025-11-22 22:54:00,591 | INFO     | [job] validate thread has finished
[2025-11-22 23:54:31] 2025-11-22 22:54:00,794 | INFO     | [job] job monitor thread has finished
[2025-11-22 23:54:31] 2025-11-22 22:54:01,025 | INFO     | [payload] validate_post thread has finished
[2025-11-22 23:54:31] 2025-11-22 22:54:01,095 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 23:54:31] 2025-11-22 22:54:01,191 | INFO     | [job] control thread has finished
[2025-11-22 23:54:31] 2025-11-22 22:54:01,352 | INFO     | [payload] control thread has finished
[2025-11-22 23:54:31] 2025-11-22 22:54:01,393 | INFO     | [data] copytool_out thread has finished
[2025-11-22 23:54:31] 2025-11-22 22:54:01,512 | INFO     | [job] queue monitor thread has finished
[2025-11-22 23:54:31] 2025-11-22 22:54:01,816 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 23:54:31] 2025-11-22 22:54:01,819 | INFO     | [data] copytool_in thread has finished
[2025-11-22 23:54:31] 2025-11-22 22:54:01,886 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 23:54:31] 2025-11-22 22:54:04,290 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 23:54:31] 2025-11-22 22:54:09,412 | INFO     | [monitor] cgroup control has ended
[2025-11-22 23:54:31] 2025-11-22 22:54:09,864 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140368561137472)>', '<ExcThread(monitor, started 140367944984320)>']
[2025-11-22 23:54:31] 2025-11-22 22:54:14,889 | INFO     | all workflow threads have been joined
[2025-11-22 23:54:31] 2025-11-22 22:54:14,889 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 23:54:31] 2025-11-22 22:54:14,889 | INFO     | traces error code: 0
[2025-11-22 23:54:31] 2025-11-22 22:54:14,890 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 23:54:31] 2025-11-22 22:54:28,131 | INFO     | PID=4766 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-22 23:54:31] 2025-11-22 22:54:28,132 | INFO     | .. there are 9 such processes running
[2025-11-22 23:54:31] 2025-11-22 22:54:28,133 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 23:54:31] 2025-11-22 22:54:28,133 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 23:54:31] 2025-11-22 22:54:28,133 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 23:54:31] 2025-11-22 22:54:28,133 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 23:54:31] 2025-11-22 22:54:28,133 | INFO     | [monitor] control thread has ended
[2025-11-22 23:54:31] 2025-11-22 22:54:28,534 [wrapper] ==== pilot stdout END ====
[2025-11-22 23:54:31] 2025-11-22 22:54:28,650 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 23:54:31] 2025-11-22 22:54:28,758 [wrapper] pilotpid: 4766
[2025-11-22 23:54:31] 2025-11-22 22:54:28,889 [wrapper] Pilot exit status: 0
[2025-11-22 23:54:31] 2025-11-22 22:54:29,313 [wrapper] pandaids: 6891597207
[2025-11-22 23:54:31] 2025-11-22 22:54:29,386 [wrapper] cleanup supervisor_pilot 17703 4767
[2025-11-22 23:54:31] 2025-11-22 22:54:29,400 [wrapper] Test setup, not cleaning
[2025-11-22 23:54:31] 2025-11-22 22:54:29,415 [wrapper] apfmon messages muted
[2025-11-22 23:54:31] 2025-11-22 22:54:29,431 [wrapper] ==== wrapper stdout END ====
[2025-11-22 23:54:31] 2025-11-22 22:54:29,445 [wrapper] ==== wrapper stderr END ====
[2025-11-22 23:54:31]  *** Error codes and diagnostics ***
[2025-11-22 23:54:31]     "exeErrorCode": 0,
[2025-11-22 23:54:31]     "exeErrorDiag": "",
[2025-11-22 23:54:31]     "pilotErrorCode": 0,
[2025-11-22 23:54:31]     "pilotErrorDiag": "",
[2025-11-22 23:54:31]  *** Listing of results directory ***
[2025-11-22 23:54:31] total 1335620
[2025-11-22 23:54:31] -rw-r--r--. 1 boinc boinc    576529 Nov 18 19:50 pilot3.tar.gz
[2025-11-22 23:54:31] -rw-r--r--. 1 boinc boinc      5112 Nov 18 19:55 queuedata.json
[2025-11-22 23:54:31] -rwx------. 1 boinc boinc     36292 Nov 18 19:56 runpilot2-wrapper.sh
[2025-11-22 23:54:31] -rw-r--r--. 1 boinc boinc       100 Nov 21 22:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 23:54:31] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 22:44 run_atlas
[2025-11-22 23:54:31] -rw-r--r--. 1 boinc boinc       105 Nov 21 22:44 job.xml
[2025-11-22 23:54:31] -rw-r--r--. 1 boinc boinc      6390 Nov 21 22:44 init_data.xml
[2025-11-22 23:54:31] -rw-r--r--. 2 boinc boinc 410503628 Nov 21 22:44 EVNT.47493065._000796.pool.root.1
[2025-11-22 23:54:31] -rw-r--r--. 2 boinc boinc     15120 Nov 21 22:44 start_atlas.sh
[2025-11-22 23:54:31] drwxrwx--x. 2 boinc boinc        68 Nov 21 22:44 shared
[2025-11-22 23:54:31] -rw-r--r--. 2 boinc boinc    590097 Nov 21 22:44 input.tar.gz
[2025-11-22 23:54:31] -rw-r--r--. 1 boinc boinc         0 Nov 21 22:44 boinc_lockfile
[2025-11-22 23:54:31] -rw-r--r--. 1 boinc boinc      2773 Nov 21 22:44 pandaJob.out
[2025-11-22 23:54:31] -rw-------. 1 boinc boinc    989798 Nov 21 22:44 agis_schedconf.cvmfs.json
[2025-11-22 23:54:31] drwx------. 5 boinc boinc      4096 Nov 21 22:44 pilot3
[2025-11-22 23:54:31] -rw-r--r--. 1 boinc boinc       533 Nov 22 23:30 boinc_task_state.xml
[2025-11-22 23:54:31] -rw-------. 1 boinc boinc 924081624 Nov 22 23:50 HITS.47493068._006608.pool.root.1
[2025-11-22 23:54:31] -rw-------. 1 boinc boinc      1033 Nov 22 23:51 memory_monitor_summary.json
[2025-11-22 23:54:31] -rw-------. 1 boinc boinc   1526164 Nov 22 23:52 agis_ddmendpoints.agis.ALL.json
[2025-11-22 23:54:31] -rw-------. 1 boinc boinc   2548830 Nov 22 23:52 log.47493068._006608.job.log.tgz.1
[2025-11-22 23:54:31] -rw-------. 1 boinc boinc      8629 Nov 22 23:53 heartbeat.json
[2025-11-22 23:54:31] -rw-r--r--. 1 boinc boinc        29 Nov 22 23:54 wrapper_checkpoint.txt
[2025-11-22 23:54:31] -rw-r--r--. 1 boinc boinc      8192 Nov 22 23:54 boinc_mmap_file
[2025-11-22 23:54:31] -rw-------. 1 boinc boinc        95 Nov 22 23:54 pilot_heartbeat.json
[2025-11-22 23:54:31] -rw-------. 1 boinc boinc       819 Nov 22 23:54 pilotlog.txt
[2025-11-22 23:54:31] -rw-------. 1 boinc boinc  12040267 Nov 22 23:54 log.47493068._006608.job.log.1
[2025-11-22 23:54:31] -rw-------. 1 boinc boinc       353 Nov 22 23:54 output.list
[2025-11-22 23:54:31] -rw-r--r--. 1 boinc boinc       620 Nov 22 23:54 runtime_log
[2025-11-22 23:54:31] -rw-------. 1 boinc boinc  14612480 Nov 22 23:54 result.tar.gz
[2025-11-22 23:54:31] -rw-r--r--. 1 boinc boinc      8703 Nov 22 23:54 runtime_log.err
[2025-11-22 23:54:31] -rw-------. 1 boinc boinc       662 Nov 22 23:54 bgjLDmA3ff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmSMGKDmkYCSMn.diag
[2025-11-22 23:54:31] -rw-r--r--. 1 boinc boinc     21455 Nov 22 23:54 stderr.txt
[2025-11-22 23:54:31] HITS file was successfully produced:
[2025-11-22 23:54:31] -rw-------. 1 boinc boinc 924081624 Nov 22 23:50 shared/HITS.pool.root.1
[2025-11-22 23:54:31]  *** Contents of shared directory: ***
[2025-11-22 23:54:31] total 1318176
[2025-11-22 23:54:31] -rw-r--r--. 2 boinc boinc 410503628 Nov 21 22:44 ATLAS.root_0
[2025-11-22 23:54:31] -rw-r--r--. 2 boinc boinc     15120 Nov 21 22:44 start_atlas.sh
[2025-11-22 23:54:31] -rw-r--r--. 2 boinc boinc    590097 Nov 21 22:44 input.tar.gz
[2025-11-22 23:54:31] -rw-------. 1 boinc boinc 924081624 Nov 22 23:50 HITS.pool.root.1
[2025-11-22 23:54:31] -rw-------. 1 boinc boinc  14612480 Nov 22 23:54 result.tar.gz
23:54:32 (943): run_atlas exited; CPU time 338831.561126
23:54:32 (943): called boinc_finish(0)

</stderr_txt>
]]>

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