Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:11:26 (12463): wrapper (7.7.26015): starting
22:11:26 (12463): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 22:11:26] Arguments: --nthreads 8
[2025-11-21 22:11:26] Threads: 8
[2025-11-21 22:11:26] Checking for CVMFS
[2025-11-21 22:11:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 22:11:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 22:11:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 22:11:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 22:11:29] 2.11.2.0 23762 278712 141716 153143 2 84 23945685 25165824 4632 130560 2 128425093 99.867 84135680 3298 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-21 22:11:29] CVMFS is ok
[2025-11-21 22:11:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 22:11:29] Checking for apptainer binary...
[2025-11-21 22:11:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 22:11:29] Running /usr/bin/apptainer --version
[2025-11-21 22:11:29] apptainer version 1.3.2-1.el7
[2025-11-21 22:11:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 22:11:51] cg-vwn242.simple-grid.lan
[2025-11-21 22:11:51] apptainer works
[2025-11-21 22:11:51] Set ATHENA_PROC_NUMBER=8
[2025-11-21 22:11:51] Set ATHENA_CORE_NUMBER=8
[2025-11-21 22:11:51] Starting ATLAS job with PandaID=6891596430
[2025-11-21 22:11:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 23:28:39]  *** The last 200 lines of the pilot log: ***
[2025-11-22 23:28:40] 2025-11-22 22:27:17,259 | INFO     | PID=16287 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 23:28:40] 2025-11-22 22:27:17,259 | INFO     | .. there are 9 such processes running
[2025-11-22 23:28:40] 2025-11-22 22:27:17,461 | INFO     | monitor loop #6105: job 0:6891596430 is in state 'finished'
[2025-11-22 23:28:40] 2025-11-22 22:27:17,461 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:28:40] 2025-11-22 22:27:18,262 | INFO     | time since job start (90688s) is within the limit (172800.0s)
[2025-11-22 23:28:40] 2025-11-22 22:27:19,968 | INFO     | monitor loop #6106: job 0:6891596430 is in state 'finished'
[2025-11-22 23:28:40] 2025-11-22 22:27:19,969 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:28:40] 2025-11-22 22:27:20,269 | INFO     | time since job start (90690s) is within the limit (172800.0s)
[2025-11-22 23:28:40] 2025-11-22 22:27:22,275 | INFO     | time since job start (90692s) is within the limit (172800.0s)
[2025-11-22 23:28:40] 2025-11-22 22:27:22,473 | INFO     | monitor loop #6107: job 0:6891596430 is in state 'finished'
[2025-11-22 23:28:40] 2025-11-22 22:27:22,473 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:28:40] 2025-11-22 22:27:24,282 | INFO     | time since job start (90694s) is within the limit (172800.0s)
[2025-11-22 23:28:40] 2025-11-22 22:27:24,987 | INFO     | monitor loop #6108: job 0:6891596430 is in state 'finished'
[2025-11-22 23:28:40] 2025-11-22 22:27:24,987 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:28:40] 2025-11-22 22:27:25,367 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 23:28:40] 2025-11-22 22:27:25,368 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-22 23:28:40] 2025-11-22 22:27:25,370 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6891596430/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 23:28:40] 2025-11-22 22:27:25,371 | INFO     | extracted standard info from prmon json
[2025-11-22 23:28:40] 2025-11-22 22:27:25,371 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 23:28:40] 2025-11-22 22:27:25,372 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 23:28:40] 2025-11-22 22:27:25,403 | INFO     | fitting pss+swap vs Time
[2025-11-22 23:28:40] 2025-11-22 22:27:25,406 | INFO     | sum of square deviations: 999123261444.7991
[2025-11-22 23:28:40] 2025-11-22 22:27:25,494 | INFO     | sum of deviations: 3807344737112.5244
[2025-11-22 23:28:40] 2025-11-22 22:27:25,494 | INFO     | mean x: 1763805286.3188896
[2025-11-22 23:28:40] 2025-11-22 22:27:25,495 | INFO     | mean y: 2845713.5402843603
[2025-11-22 23:28:40] 2025-11-22 22:27:25,495 | INFO     | intersect: -6718461890.134696
[2025-11-22 23:28:40] 2025-11-22 22:27:25,497 | INFO     | chi2: 19.167941095075307
[2025-11-22 23:28:40] 2025-11-22 22:27:25,499 | INFO     | sum of square deviations: 989011331086.0764
[2025-11-22 23:28:40] 2025-11-22 22:27:25,586 | INFO     | sum of deviations: 4284695660736.3403
[2025-11-22 23:28:40] 2025-11-22 22:27:25,586 | INFO     | mean x: 1763805133.8233695
[2025-11-22 23:28:40] 2025-11-22 22:27:25,587 | INFO     | mean y: 2852911.1820652173
[2025-11-22 23:28:40] 2025-11-22 22:27:25,587 | INFO     | intersect: -7638483406.9553585
[2025-11-22 23:28:40] 2025-11-22 22:27:25,588 | INFO     | chi2: 16.121488323313827
[2025-11-22 23:28:40] 2025-11-22 22:27:25,589 | INFO     | current chi2=16.121488323313827 (change=15.893479412581172 %)
[2025-11-22 23:28:40] 2025-11-22 22:27:25,589 | INFO     | right removable region: 1471
[2025-11-22 23:28:40] 2025-11-22 22:27:25,591 | INFO     | sum of square deviations: 989010142806.0762
[2025-11-22 23:28:40] 2025-11-22 22:27:25,677 | INFO     | sum of deviations: 3199801633920.753
[2025-11-22 23:28:40] 2025-11-22 22:27:25,678 | INFO     | mean x: 1763805438.8233695
[2025-11-22 23:28:40] 2025-11-22 22:27:25,678 | INFO     | mean y: 2854874.175951087
[2025-11-22 23:28:40] 2025-11-22 22:27:25,678 | INFO     | intersect: -5703686728.170349
[2025-11-22 23:28:40] 2025-11-22 22:27:25,680 | INFO     | chi2: 14.666945304631792
[2025-11-22 23:28:40] 2025-11-22 22:27:25,680 | INFO     | current chi2=14.666945304631792 (change=23.48189494175734 %)
[2025-11-22 23:28:40] 2025-11-22 22:27:25,681 | INFO     | left removable region: 10
[2025-11-22 23:28:40] 2025-11-22 22:27:25,690 | INFO     | sum of square deviations: 967003382016.6677
[2025-11-22 23:28:40] 2025-11-22 22:27:25,760 | INFO     | sum of deviations: 3289662478734.003
[2025-11-22 23:28:40] 2025-11-22 22:27:25,760 | INFO     | mean x: 1763805408.3333333
[2025-11-22 23:28:40] 2025-11-22 22:27:25,761 | INFO     | mean y: 2871350.9712525667
[2025-11-22 23:28:40] 2025-11-22 22:27:25,761 | INFO     | intersect: -5997443207.889579
[2025-11-22 23:28:40] 2025-11-22 22:27:25,763 | INFO     | chi2: 7.9547605149992835
[2025-11-22 23:28:40] 2025-11-22 22:27:25,763 | INFO     | current memory leak: 3.40 B/s (using 1461 data points, chi2=7.95)
[2025-11-22 23:28:40] 2025-11-22 22:27:25,765 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-22 23:28:40] 2025-11-22 22:27:25,766 | INFO     | ..............................
[2025-11-22 23:28:40] 2025-11-22 22:27:25,766 | INFO     | . Timing measurements:
[2025-11-22 23:28:40] 2025-11-22 22:27:25,766 | INFO     | . get job = 0 s
[2025-11-22 23:28:40] 2025-11-22 22:27:25,766 | INFO     | . initial setup = 9 s
[2025-11-22 23:28:40] 2025-11-22 22:27:25,766 | INFO     | . payload setup = 163 s
[2025-11-22 23:28:40] 2025-11-22 22:27:25,766 | INFO     | . stage-in = 0 s
[2025-11-22 23:28:40] 2025-11-22 22:27:25,766 | INFO     | . payload execution = 90210 s
[2025-11-22 23:28:40] 2025-11-22 22:27:25,766 | INFO     | . stage-out = 5 s
[2025-11-22 23:28:40] 2025-11-22 22:27:25,766 | INFO     | . log creation = 2 s
[2025-11-22 23:28:40] 2025-11-22 22:27:25,767 | INFO     | ..............................
[2025-11-22 23:28:40] 2025-11-22 22:27:25,895 | INFO     | 
[2025-11-22 23:28:40] 2025-11-22 22:27:25,896 | INFO     | job summary report
[2025-11-22 23:28:40] 2025-11-22 22:27:25,896 | INFO     | --------------------------------------------------
[2025-11-22 23:28:40] 2025-11-22 22:27:25,896 | INFO     | PanDA job id: 6891596430
[2025-11-22 23:28:40] 2025-11-22 22:27:25,896 | INFO     | task id: 47493068
[2025-11-22 23:28:40] 2025-11-22 22:27:25,896 | INFO     | errors: (none)
[2025-11-22 23:28:40] 2025-11-22 22:27:25,896 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 23:28:40] 2025-11-22 22:27:25,896 | INFO     | pilot state: finished 
[2025-11-22 23:28:40] 2025-11-22 22:27:25,897 | INFO     | transexitcode: 0
[2025-11-22 23:28:40] 2025-11-22 22:27:25,897 | INFO     | exeerrorcode: 0
[2025-11-22 23:28:40] 2025-11-22 22:27:25,897 | INFO     | exeerrordiag: 
[2025-11-22 23:28:40] 2025-11-22 22:27:25,897 | INFO     | exitcode: 0
[2025-11-22 23:28:40] 2025-11-22 22:27:25,897 | INFO     | exitmsg: OK
[2025-11-22 23:28:40] 2025-11-22 22:27:25,897 | INFO     | cpuconsumptiontime: 333510 s
[2025-11-22 23:28:40] 2025-11-22 22:27:25,897 | INFO     | nevents: 1000
[2025-11-22 23:28:40] 2025-11-22 22:27:25,897 | INFO     | neventsw: 0
[2025-11-22 23:28:40] 2025-11-22 22:27:25,897 | INFO     | pid: 22851
[2025-11-22 23:28:40] 2025-11-22 22:27:25,897 | INFO     | pgrp: 22851
[2025-11-22 23:28:40] 2025-11-22 22:27:25,897 | INFO     | corecount: 8
[2025-11-22 23:28:40] 2025-11-22 22:27:25,898 | INFO     | event service: False
[2025-11-22 23:28:40] 2025-11-22 22:27:25,898 | INFO     | sizes: {0: 2298625, 1: 2298824, 12: 2298824, 23: 2298852, 34: 2298880, 44: 2298908, 55: 2299064, 66: 2299092, 77: 2299120, 87: 2299176, 98: 2299204, 106: 2299774, 
[2025-11-22 23:28:40] 2025-11-22 22:27:25,898 | INFO     | --------------------------------------------------
[2025-11-22 23:28:40] 2025-11-22 22:27:25,898 | INFO     | 
[2025-11-22 23:28:40] 2025-11-22 22:27:25,898 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-22 23:28:40] 2025-11-22 22:27:26,117 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 23:28:40] 2025-11-22 22:27:26,117 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 23:28:40] 2025-11-22 22:27:26,117 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 23:28:40] 2025-11-22 22:27:26,117 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 23:28:40] 2025-11-22 22:27:26,117 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 23:28:40] 2025-11-22 22:27:26,118 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 23:28:40] 2025-11-22 22:27:26,118 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 23:28:40] 2025-11-22 22:27:26,118 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 23:28:40] 2025-11-22 22:27:26,118 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 23:28:40] 2025-11-22 22:27:26,118 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 23:28:40] 2025-11-22 22:27:26,118 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 23:28:40] 2025-11-22 22:27:26,118 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 23:28:40] 2025-11-22 22:27:26,118 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 23:28:40] 2025-11-22 22:27:26,118 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 23:28:40] 2025-11-22 22:27:26,118 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 23:28:40] 2025-11-22 22:27:26,118 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 23:28:40] 2025-11-22 22:27:26,119 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 23:28:40] 2025-11-22 22:27:26,119 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 23:28:40] 2025-11-22 22:27:26,119 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 23:28:40] 2025-11-22 22:27:26,119 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 23:28:40] 2025-11-22 22:27:26,119 | INFO     | job 6891596430 has completed (purged errors)
[2025-11-22 23:28:40] 2025-11-22 22:27:26,119 | INFO     | overall cleanup function is called
[2025-11-22 23:28:40] 2025-11-22 22:27:27,136 | INFO     | --- collectZombieJob: --- 10, [22851]
[2025-11-22 23:28:40] 2025-11-22 22:27:27,136 | INFO     | zombie collector waiting for pid 22851
[2025-11-22 23:28:40] 2025-11-22 22:27:27,137 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 23:28:40] 2025-11-22 22:27:27,137 | INFO     | collected zombie processes
[2025-11-22 23:28:40] 2025-11-22 22:27:27,137 | INFO     | will attempt to kill all subprocesses of pid=22851
[2025-11-22 23:28:40] 2025-11-22 22:27:27,261 | INFO     | process IDs to be killed: [22851] (in reverse order)
[2025-11-22 23:28:40] 2025-11-22 22:27:28,465 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 23:28:40] 2025-11-22 22:27:28,465 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 23:28:40] 2025-11-22 22:27:28,469 | INFO     | did not find any defunct processes belonging to 22851
[2025-11-22 23:28:40] 2025-11-22 22:27:28,472 | INFO     | did not find any defunct processes belonging to 22851
[2025-11-22 23:28:40] 2025-11-22 22:27:28,533 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 23:28:40] 2025-11-22 22:27:28,534 | INFO     | ready for new job
[2025-11-22 23:28:40] 2025-11-22 22:27:28,534 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 23:28:40] 2025-11-22 22:27:28,540 | INFO     | ***************************************
[2025-11-22 23:28:40] 2025-11-22 22:27:28,541 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 23:28:40] 2025-11-22 22:27:28,541 | INFO     | ***************************************
[2025-11-22 23:28:40] 2025-11-22 22:27:28,541 | INFO     | 
[2025-11-22 23:28:40] 2025-11-22 22:27:28,542 | INFO     | pilot is running in a VM
[2025-11-22 23:28:40] 2025-11-22 22:27:28,542 | INFO     | architecture information:
[2025-11-22 23:28:40] 2025-11-22 22:27:28,546 | INFO     | executing command: cat /etc/os-release
[2025-11-22 23:28:40] 2025-11-22 22:27:28,757 | INFO     | cat /etc/os-release:
[2025-11-22 23:28:40] NAME="CentOS Linux"
[2025-11-22 23:28:40] VERSION="7 (Core)"
[2025-11-22 23:28:40] ID="centos"
[2025-11-22 23:28:40] ID_LIKE="rhel fedora"
[2025-11-22 23:28:40] VERSION_ID="7"
[2025-11-22 23:28:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 23:28:40] ANSI_COLOR="0;31"
[2025-11-22 23:28:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 23:28:40] HOME_URL="https://www.centos.org/"
[2025-11-22 23:28:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 23:28:40] 
[2025-11-22 23:28:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 23:28:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 23:28:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 23:28:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 23:28:40] 
[2025-11-22 23:28:40] 2025-11-22 22:27:28,757 | INFO     | ***************************************
[2025-11-22 23:28:40] 2025-11-22 22:27:29,260 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-22 23:28:40] 2025-11-22 22:27:29,544 | INFO     | sufficient remaining disk space (494965620736 B)
[2025-11-22 23:28:40] 2025-11-22 22:27:29,544 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 23:28:40] 2025-11-22 22:27:29,544 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 23:28:40] 2025-11-22 22:27:29,544 | INFO     | update_server=False
[2025-11-22 23:28:40] 2025-11-22 22:27:29,544 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 23:28:40] 2025-11-22 22:27:29,552 | INFO     | all data control threads have been joined
[2025-11-22 23:28:40] 2025-11-22 22:27:30,012 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 23:28:40] 2025-11-22 22:27:30,013 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 23:28:40] 2025-11-22 22:27:30,013 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 23:28:40] 2025-11-22 22:27:30,013 | INFO     | will abort loop
[2025-11-22 23:28:40] 2025-11-22 22:27:30,074 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 23:28:40] 2025-11-22 22:27:30,221 | INFO     | all job control threads have been joined
[2025-11-22 23:28:40] 2025-11-22 22:27:30,492 | INFO     | all payload control threads have been joined
[2025-11-22 23:28:40] 2025-11-22 22:27:30,497 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 23:28:40] 2025-11-22 22:27:30,550 | INFO     | [job] retrieve thread has finished
[2025-11-22 23:28:40] 2025-11-22 22:27:30,558 | INFO     | [data] control thread has finished
[2025-11-22 23:28:40] 2025-11-22 22:27:30,856 | INFO     | [data] copytool_in thread has finished
[2025-11-22 23:28:40] 2025-11-22 22:27:30,914 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 23:28:40] 2025-11-22 22:27:31,018 | INFO     | [job] job monitor thread has finished
[2025-11-22 23:28:40] 2025-11-22 22:27:31,125 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 23:28:40] 2025-11-22 22:27:31,227 | INFO     | [job] control thread has finished
[2025-11-22 23:28:40] 2025-11-22 22:27:31,392 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 23:28:40] 2025-11-22 22:27:31,422 | INFO     | [job] validate thread has finished
[2025-11-22 23:28:40] 2025-11-22 22:27:31,470 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 23:28:40] 2025-11-22 22:27:31,498 | INFO     | [payload] control thread has finished
[2025-11-22 23:28:40] 2025-11-22 22:27:31,835 | INFO     | [payload] failed_post thread has finished
[2025-11-22 23:28:40] 2025-11-22 22:27:31,920 | INFO     | [job] queue monitor thread has finished
[2025-11-22 23:28:40] 2025-11-22 22:27:31,970 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 23:28:40] 2025-11-22 22:27:32,022 | INFO     | [payload] validate_post thread has finished
[2025-11-22 23:28:40] 2025-11-22 22:27:32,505 | INFO     | [data] copytool_out thread has finished
[2025-11-22 23:28:40] 2025-11-22 22:27:34,083 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 23:28:40] 2025-11-22 22:27:57,479 | INFO     | PID=16287 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 23:28:40] 2025-11-22 22:27:57,479 | INFO     | .. there are 9 such processes running
[2025-11-22 23:28:40] 2025-11-22 22:27:57,480 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 23:28:40] 2025-11-22 22:27:57,480 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 23:28:40] 2025-11-22 22:27:57,480 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 23:28:40] 2025-11-22 22:28:28,496 | INFO     | [monitor] cgroup control has ended
[2025-11-22 23:28:40] 2025-11-22 22:28:29,892 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139811515131712)>', '<ExcThread(monitor, started 139810782050048)>']
[2025-11-22 23:28:40] 2025-11-22 22:28:30,678 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 23:28:40] 2025-11-22 22:28:30,679 | INFO     | [monitor] control thread has ended
[2025-11-22 23:28:40] 2025-11-22 22:28:34,918 | INFO     | all workflow threads have been joined
[2025-11-22 23:28:40] 2025-11-22 22:28:34,919 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 23:28:40] 2025-11-22 22:28:34,919 | INFO     | traces error code: 0
[2025-11-22 23:28:40] 2025-11-22 22:28:34,919 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 23:28:40] 2025-11-22 22:28:35,354 [wrapper] ==== pilot stdout END ====
[2025-11-22 23:28:40] 2025-11-22 22:28:35,459 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 23:28:40] 2025-11-22 22:28:35,570 [wrapper] pilotpid: 16287
[2025-11-22 23:28:40] 2025-11-22 22:28:35,645 [wrapper] Pilot exit status: 0
[2025-11-22 23:28:40] 2025-11-22 22:28:35,977 [wrapper] pandaids: 6891596430
[2025-11-22 23:28:40] 2025-11-22 22:28:36,790 [wrapper] cleanup supervisor_pilot 19838 16288
[2025-11-22 23:28:40] 2025-11-22 22:28:36,929 [wrapper] Test setup, not cleaning
[2025-11-22 23:28:40] 2025-11-22 22:28:37,049 [wrapper] apfmon messages muted
[2025-11-22 23:28:40] 2025-11-22 22:28:37,138 [wrapper] ==== wrapper stdout END ====
[2025-11-22 23:28:40] 2025-11-22 22:28:37,192 [wrapper] ==== wrapper stderr END ====
[2025-11-22 23:28:40]  *** Error codes and diagnostics ***
[2025-11-22 23:28:40]     "exeErrorCode": 0,
[2025-11-22 23:28:40]     "exeErrorDiag": "",
[2025-11-22 23:28:40]     "pilotErrorCode": 0,
[2025-11-22 23:28:40]     "pilotErrorDiag": "",
[2025-11-22 23:28:40]  *** Listing of results directory ***
[2025-11-22 23:28:40] total 1316092
[2025-11-22 23:28:40] -rw-r--r--. 1 boinc boinc      5112 Nov 18 19:48 queuedata.json
[2025-11-22 23:28:40] -rwx------. 1 boinc boinc     36292 Nov 18 19:50 runpilot2-wrapper.sh
[2025-11-22 23:28:40] -rw-r--r--. 1 boinc boinc    576529 Nov 18 19:50 pilot3.tar.gz
[2025-11-22 23:28:40] -rw-r--r--. 1 boinc boinc       100 Nov 21 22:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 23:28:40] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 22:11 run_atlas
[2025-11-22 23:28:40] -rw-r--r--. 1 boinc boinc       105 Nov 21 22:11 job.xml
[2025-11-22 23:28:40] -rw-r--r--. 2 boinc boinc 409672858 Nov 21 22:11 EVNT.47493065._000783.pool.root.1
[2025-11-22 23:28:40] -rw-r--r--. 1 boinc boinc      6391 Nov 21 22:11 init_data.xml
[2025-11-22 23:28:40] -rw-r--r--. 2 boinc boinc     15120 Nov 21 22:11 start_atlas.sh
[2025-11-22 23:28:40] drwxrwx--x. 2 boinc boinc        68 Nov 21 22:11 shared
[2025-11-22 23:28:40] -rw-r--r--. 2 boinc boinc    590091 Nov 21 22:11 input.tar.gz
[2025-11-22 23:28:40] -rw-r--r--. 1 boinc boinc         0 Nov 21 22:11 boinc_lockfile
[2025-11-22 23:28:40] -rw-r--r--. 1 boinc boinc      2773 Nov 21 22:11 pandaJob.out
[2025-11-22 23:28:40] -rw-------. 1 boinc boinc    989798 Nov 21 22:15 agis_schedconf.cvmfs.json
[2025-11-22 23:28:40] drwx------. 5 boinc boinc      4096 Nov 21 22:15 pilot3
[2025-11-22 23:28:40] -rw-r--r--. 1 boinc boinc       533 Nov 22 23:04 boinc_task_state.xml
[2025-11-22 23:28:40] -rw-------. 1 boinc boinc 904833024 Nov 22 23:24 HITS.47493068._006480.pool.root.1
[2025-11-22 23:28:40] -rw-------. 1 boinc boinc      1031 Nov 22 23:25 memory_monitor_summary.json
[2025-11-22 23:28:40] -rw-------. 1 boinc boinc   1526164 Nov 22 23:25 agis_ddmendpoints.agis.ALL.json
[2025-11-22 23:28:40] -rw-------. 1 boinc boinc   2553397 Nov 22 23:25 log.47493068._006480.job.log.tgz.1
[2025-11-22 23:28:40] -rw-------. 1 boinc boinc      7944 Nov 22 23:27 heartbeat.json
[2025-11-22 23:28:40] -rw-------. 1 boinc boinc        95 Nov 22 23:27 pilot_heartbeat.json
[2025-11-22 23:28:40] -rw-r--r--. 1 boinc boinc      8192 Nov 22 23:28 boinc_mmap_file
[2025-11-22 23:28:40] -rw-r--r--. 1 boinc boinc        29 Nov 22 23:28 wrapper_checkpoint.txt
[2025-11-22 23:28:40] -rw-------. 1 boinc boinc      5070 Nov 22 23:28 pilotlog.txt
[2025-11-22 23:28:40] -rw-------. 1 boinc boinc  12082345 Nov 22 23:28 log.47493068._006480.job.log.1
[2025-11-22 23:28:40] -rw-------. 1 boinc boinc       353 Nov 22 23:28 output.list
[2025-11-22 23:28:40] -rw-r--r--. 1 boinc boinc       620 Nov 22 23:28 runtime_log
[2025-11-22 23:28:40] -rw-------. 1 boinc boinc  14653440 Nov 22 23:28 result.tar.gz
[2025-11-22 23:28:40] -rw-------. 1 boinc boinc       662 Nov 22 23:28 tEoLDm7xff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5KGKDmSD4BEn.diag
[2025-11-22 23:28:40] -rw-r--r--. 1 boinc boinc      8703 Nov 22 23:28 runtime_log.err
[2025-11-22 23:28:40] -rw-r--r--. 1 boinc boinc     21495 Nov 22 23:28 stderr.txt
[2025-11-22 23:28:40] HITS file was successfully produced:
[2025-11-22 23:28:40] -rw-------. 1 boinc boinc 904833024 Nov 22 23:24 shared/HITS.pool.root.1
[2025-11-22 23:28:40]  *** Contents of shared directory: ***
[2025-11-22 23:28:40] total 1298608
[2025-11-22 23:28:40] -rw-r--r--. 2 boinc boinc 409672858 Nov 21 22:11 ATLAS.root_0
[2025-11-22 23:28:40] -rw-r--r--. 2 boinc boinc     15120 Nov 21 22:11 start_atlas.sh
[2025-11-22 23:28:40] -rw-r--r--. 2 boinc boinc    590091 Nov 21 22:11 input.tar.gz
[2025-11-22 23:28:40] -rw-------. 1 boinc boinc 904833024 Nov 22 23:24 HITS.pool.root.1
[2025-11-22 23:28:40] -rw-------. 1 boinc boinc  14653440 Nov 22 23:28 result.tar.gz
23:28:41 (12463): run_atlas exited; CPU time 334013.825998
23:28:41 (12463): called boinc_finish(0)

</stderr_txt>
]]>

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