Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:11:54 (10371): wrapper (7.7.26015): starting
01:11:54 (10371): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 01:11:54] Arguments: --nthreads 8
[2025-11-22 01:11:54] Threads: 8
[2025-11-22 01:11:54] Checking for CVMFS
[2025-11-22 01:11:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 01:11:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 01:11:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 01:11:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 01:11:57] 2.11.2.0 7869 278724 141148 153152 3 236 17534359 25165824 4535 130560 2 135485510 99.884 72995634 2849 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-22 01:11:57] CVMFS is ok
[2025-11-22 01:11:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 01:11:57] Checking for apptainer binary...
[2025-11-22 01:11:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 01:11:57] Running /usr/bin/apptainer --version
[2025-11-22 01:11:57] apptainer version 1.3.2-1.el7
[2025-11-22 01:11:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 01:12:05] cg-vwn276.simple-grid.lan
[2025-11-22 01:12:05] apptainer works
[2025-11-22 01:12:05] Set ATHENA_PROC_NUMBER=8
[2025-11-22 01:12:05] Set ATHENA_CORE_NUMBER=8
[2025-11-22 01:12:05] Starting ATLAS job with PandaID=6891596329
[2025-11-22 01:12:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 02:51:22]  *** The last 200 lines of the pilot log: ***
[2025-11-23 02:51:22] 2025-11-23 01:50:30,900 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 02:51:22] 2025-11-23 01:50:32,047 | INFO     | time since job start (92100s) is within the limit (172800.0s)
[2025-11-23 02:51:22] 2025-11-23 01:50:33,193 | INFO     | PID=14157 has CPU usage=16.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-23 02:51:22] 2025-11-23 01:50:33,193 | INFO     | .. there are 9 such processes running
[2025-11-23 02:51:22] 2025-11-23 01:50:33,416 | INFO     | monitor loop #6142: job 0:6891596329 is in state 'finished'
[2025-11-23 02:51:22] 2025-11-23 01:50:33,416 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 02:51:22] 2025-11-23 01:50:34,194 | INFO     | time since job start (92102s) is within the limit (172800.0s)
[2025-11-23 02:51:22] 2025-11-23 01:50:35,932 | INFO     | monitor loop #6143: job 0:6891596329 is in state 'finished'
[2025-11-23 02:51:22] 2025-11-23 01:50:35,933 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 02:51:22] 2025-11-23 01:50:36,211 | INFO     | time since job start (92104s) is within the limit (172800.0s)
[2025-11-23 02:51:22] 2025-11-23 01:50:38,218 | INFO     | time since job start (92106s) is within the limit (172800.0s)
[2025-11-23 02:51:22] 2025-11-23 01:50:38,447 | INFO     | monitor loop #6144: job 0:6891596329 is in state 'finished'
[2025-11-23 02:51:22] 2025-11-23 01:50:38,447 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 02:51:22] 2025-11-23 01:50:40,226 | INFO     | time since job start (92108s) is within the limit (172800.0s)
[2025-11-23 02:51:22] 2025-11-23 01:50:40,446 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 02:51:22] 2025-11-23 01:50:40,447 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-23 02:51:22] 2025-11-23 01:50:40,455 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6891596329/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 02:51:22] 2025-11-23 01:50:40,456 | INFO     | extracted standard info from prmon json
[2025-11-23 02:51:22] 2025-11-23 01:50:40,456 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 02:51:22] 2025-11-23 01:50:40,456 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 02:51:22] 2025-11-23 01:50:40,488 | INFO     | fitting pss+swap vs Time
[2025-11-23 02:51:22] 2025-11-23 01:50:40,491 | INFO     | sum of square deviations: 1050721735862.3118
[2025-11-23 02:51:22] 2025-11-23 01:50:40,574 | INFO     | sum of deviations: 2703958738910.9956
[2025-11-23 02:51:22] 2025-11-23 01:50:40,575 | INFO     | mean x: 1763816813.6005325
[2025-11-23 02:51:22] 2025-11-23 01:50:40,575 | INFO     | mean y: 2838328.2516644476
[2025-11-23 02:51:22] 2025-11-23 01:50:40,575 | INFO     | intersect: -4536220610.182899
[2025-11-23 02:51:22] 2025-11-23 01:50:40,577 | INFO     | chi2: 25.571907479433104
[2025-11-23 02:51:22] 2025-11-23 01:50:40,579 | INFO     | sum of square deviations: 1040263895093.7434
[2025-11-23 02:51:22] 2025-11-23 01:50:40,647 | INFO     | sum of deviations: 3203215953782.9844
[2025-11-23 02:51:22] 2025-11-23 01:50:40,647 | INFO     | mean x: 1763816661.1042085
[2025-11-23 02:51:22] 2025-11-23 01:50:40,648 | INFO     | mean y: 2845607.9873079495
[2025-11-23 02:51:22] 2025-11-23 01:50:40,648 | INFO     | intersect: -5428358623.019957
[2025-11-23 02:51:22] 2025-11-23 01:50:40,649 | INFO     | chi2: 22.262075466124333
[2025-11-23 02:51:22] 2025-11-23 01:50:40,650 | INFO     | current chi2=22.262075466124333 (change=12.943234742933404 %)
[2025-11-23 02:51:22] 2025-11-23 01:50:40,650 | INFO     | right removable region: 1496
[2025-11-23 02:51:22] 2025-11-23 01:50:40,652 | INFO     | sum of square deviations: 1040262886763.7434
[2025-11-23 02:51:22] 2025-11-23 01:50:40,719 | INFO     | sum of deviations: 2095696152138.2656
[2025-11-23 02:51:22] 2025-11-23 01:50:40,719 | INFO     | mean x: 1763816966.1042085
[2025-11-23 02:51:22] 2025-11-23 01:50:40,719 | INFO     | mean y: 2847196.4983299933
[2025-11-23 02:51:22] 2025-11-23 01:50:40,719 | INFO     | intersect: -3550508859.911941
[2025-11-23 02:51:22] 2025-11-23 01:50:40,721 | INFO     | chi2: 21.247920852166597
[2025-11-23 02:51:22] 2025-11-23 01:50:40,722 | INFO     | current chi2=21.247920852166597 (change=16.909128232785097 %)
[2025-11-23 02:51:22] 2025-11-23 01:50:40,722 | INFO     | left removable region: 10
[2025-11-23 02:51:22] 2025-11-23 01:50:40,724 | INFO     | sum of square deviations: 1017499396122.732
[2025-11-23 02:51:22] 2025-11-23 01:50:40,792 | INFO     | sum of deviations: 2216834758686.2124
[2025-11-23 02:51:22] 2025-11-23 01:50:40,792 | INFO     | mean x: 1763816935.6123822
[2025-11-23 02:51:22] 2025-11-23 01:50:40,792 | INFO     | mean y: 2863491.2711978466
[2025-11-23 02:51:22] 2025-11-23 01:50:40,792 | INFO     | intersect: -3839979763.2060657
[2025-11-23 02:51:22] 2025-11-23 01:50:40,794 | INFO     | chi2: 14.333951163475799
[2025-11-23 02:51:22] 2025-11-23 01:50:40,794 | INFO     | current memory leak: 2.18 B/s (using 1486 data points, chi2=14.33)
[2025-11-23 02:51:22] 2025-11-23 01:50:40,797 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-23 02:51:22] 2025-11-23 01:50:40,798 | INFO     | ..............................
[2025-11-23 02:51:22] 2025-11-23 01:50:40,798 | INFO     | . Timing measurements:
[2025-11-23 02:51:22] 2025-11-23 01:50:40,798 | INFO     | . get job = 0 s
[2025-11-23 02:51:22] 2025-11-23 01:50:40,798 | INFO     | . initial setup = 11 s
[2025-11-23 02:51:22] 2025-11-23 01:50:40,798 | INFO     | . payload setup = 133 s
[2025-11-23 02:51:22] 2025-11-23 01:50:40,798 | INFO     | . stage-in = 0 s
[2025-11-23 02:51:22] 2025-11-23 01:50:40,798 | INFO     | . payload execution = 91748 s
[2025-11-23 02:51:22] 2025-11-23 01:50:40,798 | INFO     | . stage-out = 4 s
[2025-11-23 02:51:22] 2025-11-23 01:50:40,798 | INFO     | . log creation = 1 s
[2025-11-23 02:51:22] 2025-11-23 01:50:40,799 | INFO     | ..............................
[2025-11-23 02:51:22] 2025-11-23 01:50:41,322 | INFO     | 
[2025-11-23 02:51:22] 2025-11-23 01:50:41,322 | INFO     | job summary report
[2025-11-23 02:51:22] 2025-11-23 01:50:41,322 | INFO     | --------------------------------------------------
[2025-11-23 02:51:22] 2025-11-23 01:50:41,322 | INFO     | PanDA job id: 6891596329
[2025-11-23 02:51:22] 2025-11-23 01:50:41,322 | INFO     | task id: 47493068
[2025-11-23 02:51:22] 2025-11-23 01:50:41,322 | INFO     | errors: (none)
[2025-11-23 02:51:22] 2025-11-23 01:50:41,322 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 02:51:22] 2025-11-23 01:50:41,323 | INFO     | pilot state: finished 
[2025-11-23 02:51:22] 2025-11-23 01:50:41,323 | INFO     | transexitcode: 0
[2025-11-23 02:51:22] 2025-11-23 01:50:41,323 | INFO     | exeerrorcode: 0
[2025-11-23 02:51:22] 2025-11-23 01:50:41,323 | INFO     | exeerrordiag: 
[2025-11-23 02:51:22] 2025-11-23 01:50:41,323 | INFO     | exitcode: 0
[2025-11-23 02:51:22] 2025-11-23 01:50:41,323 | INFO     | exitmsg: OK
[2025-11-23 02:51:22] 2025-11-23 01:50:41,323 | INFO     | cpuconsumptiontime: 339627 s
[2025-11-23 02:51:22] 2025-11-23 01:50:41,323 | INFO     | nevents: 1000
[2025-11-23 02:51:22] 2025-11-23 01:50:41,323 | INFO     | neventsw: 0
[2025-11-23 02:51:22] 2025-11-23 01:50:41,323 | INFO     | pid: 20755
[2025-11-23 02:51:22] 2025-11-23 01:50:41,324 | INFO     | pgrp: 20755
[2025-11-23 02:51:22] 2025-11-23 01:50:41,324 | INFO     | corecount: 8
[2025-11-23 02:51:22] 2025-11-23 01:50:41,324 | INFO     | event service: False
[2025-11-23 02:51:22] 2025-11-23 01:50:41,324 | INFO     | sizes: {0: 2298568, 1: 2298823, 12: 2298823, 23: 2298851, 34: 2298879, 45: 2298907, 55: 2299063, 66: 2299091, 77: 2299119, 88: 2299175, 98: 2299203, 100: 2299773, 
[2025-11-23 02:51:22] 2025-11-23 01:50:41,324 | INFO     | --------------------------------------------------
[2025-11-23 02:51:22] 2025-11-23 01:50:41,324 | INFO     | 
[2025-11-23 02:51:22] 2025-11-23 01:50:41,324 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-23 02:51:22] 2025-11-23 01:50:41,413 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 02:51:22] 2025-11-23 01:50:41,414 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 02:51:22] 2025-11-23 01:50:41,414 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 02:51:22] 2025-11-23 01:50:41,414 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 02:51:22] 2025-11-23 01:50:41,414 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 02:51:22] 2025-11-23 01:50:41,414 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 02:51:22] 2025-11-23 01:50:41,414 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 02:51:22] 2025-11-23 01:50:41,414 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 02:51:22] 2025-11-23 01:50:41,414 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 02:51:22] 2025-11-23 01:50:41,415 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 02:51:22] 2025-11-23 01:50:41,415 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 02:51:22] 2025-11-23 01:50:41,415 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 02:51:22] 2025-11-23 01:50:41,415 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 02:51:22] 2025-11-23 01:50:41,415 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 02:51:22] 2025-11-23 01:50:41,415 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 02:51:22] 2025-11-23 01:50:41,415 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 02:51:22] 2025-11-23 01:50:41,415 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 02:51:22] 2025-11-23 01:50:41,416 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 02:51:22] 2025-11-23 01:50:41,416 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 02:51:22] 2025-11-23 01:50:41,416 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 02:51:22] 2025-11-23 01:50:41,416 | INFO     | job 6891596329 has completed (purged errors)
[2025-11-23 02:51:22] 2025-11-23 01:50:41,416 | INFO     | overall cleanup function is called
[2025-11-23 02:51:22] 2025-11-23 01:50:42,439 | INFO     | --- collectZombieJob: --- 10, [20755]
[2025-11-23 02:51:22] 2025-11-23 01:50:42,439 | INFO     | zombie collector waiting for pid 20755
[2025-11-23 02:51:22] 2025-11-23 01:50:42,439 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 02:51:22] 2025-11-23 01:50:42,439 | INFO     | collected zombie processes
[2025-11-23 02:51:22] 2025-11-23 01:50:42,439 | INFO     | will attempt to kill all subprocesses of pid=20755
[2025-11-23 02:51:22] 2025-11-23 01:50:42,558 | INFO     | process IDs to be killed: [20755] (in reverse order)
[2025-11-23 02:51:22] 2025-11-23 01:50:42,648 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 02:51:22] 2025-11-23 01:50:42,649 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 02:51:22] 2025-11-23 01:50:42,653 | INFO     | did not find any defunct processes belonging to 20755
[2025-11-23 02:51:22] 2025-11-23 01:50:42,656 | INFO     | did not find any defunct processes belonging to 20755
[2025-11-23 02:51:22] 2025-11-23 01:50:42,657 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 02:51:22] 2025-11-23 01:50:42,658 | INFO     | ready for new job
[2025-11-23 02:51:22] 2025-11-23 01:50:42,658 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 02:51:22] 2025-11-23 01:50:42,665 | INFO     | ***************************************
[2025-11-23 02:51:22] 2025-11-23 01:50:42,665 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 02:51:22] 2025-11-23 01:50:42,665 | INFO     | ***************************************
[2025-11-23 02:51:22] 2025-11-23 01:50:42,665 | INFO     | 
[2025-11-23 02:51:22] 2025-11-23 01:50:42,666 | INFO     | pilot is running in a VM
[2025-11-23 02:51:22] 2025-11-23 01:50:42,666 | INFO     | architecture information:
[2025-11-23 02:51:22] 2025-11-23 01:50:42,667 | INFO     | executing command: cat /etc/os-release
[2025-11-23 02:51:22] 2025-11-23 01:50:42,691 | INFO     | cat /etc/os-release:
[2025-11-23 02:51:22] NAME="CentOS Linux"
[2025-11-23 02:51:22] VERSION="7 (Core)"
[2025-11-23 02:51:22] ID="centos"
[2025-11-23 02:51:22] ID_LIKE="rhel fedora"
[2025-11-23 02:51:22] VERSION_ID="7"
[2025-11-23 02:51:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 02:51:22] ANSI_COLOR="0;31"
[2025-11-23 02:51:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 02:51:22] HOME_URL="https://www.centos.org/"
[2025-11-23 02:51:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 02:51:22] 
[2025-11-23 02:51:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 02:51:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 02:51:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 02:51:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 02:51:22] 
[2025-11-23 02:51:22] 2025-11-23 01:50:42,691 | INFO     | ***************************************
[2025-11-23 02:51:22] 2025-11-23 01:50:43,196 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-23 02:51:22] 2025-11-23 01:50:43,326 | INFO     | sufficient remaining disk space (495172190208 B)
[2025-11-23 02:51:22] 2025-11-23 01:50:43,326 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 02:51:22] 2025-11-23 01:50:43,327 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 02:51:22] 2025-11-23 01:50:43,327 | INFO     | update_server=False
[2025-11-23 02:51:22] 2025-11-23 01:50:43,327 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 02:51:22] 2025-11-23 01:50:43,456 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 02:51:22] 2025-11-23 01:50:43,456 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 02:51:22] 2025-11-23 01:50:43,456 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 02:51:22] 2025-11-23 01:50:43,456 | INFO     | will abort loop
[2025-11-23 02:51:22] 2025-11-23 01:50:44,165 | INFO     | all payload control threads have been joined
[2025-11-23 02:51:22] 2025-11-23 01:50:44,208 | INFO     | all data control threads have been joined
[2025-11-23 02:51:22] 2025-11-23 01:50:44,333 | INFO     | [job] retrieve thread has finished
[2025-11-23 02:51:22] 2025-11-23 01:50:44,426 | INFO     | [job] validate thread has finished
[2025-11-23 02:51:22] 2025-11-23 01:50:44,461 | INFO     | [job] job monitor thread has finished
[2025-11-23 02:51:22] 2025-11-23 01:50:44,651 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 02:51:22] 2025-11-23 01:50:44,702 | INFO     | [data] copytool_in thread has finished
[2025-11-23 02:51:22] 2025-11-23 01:50:44,783 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 02:51:22] 2025-11-23 01:50:44,786 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 02:51:22] 2025-11-23 01:50:44,917 | INFO     | all job control threads have been joined
[2025-11-23 02:51:22] 2025-11-23 01:50:45,076 | INFO     | [payload] failed_post thread has finished
[2025-11-23 02:51:22] 2025-11-23 01:50:45,153 | INFO     | [payload] validate_post thread has finished
[2025-11-23 02:51:22] 2025-11-23 01:50:45,171 | INFO     | [payload] control thread has finished
[2025-11-23 02:51:22] 2025-11-23 01:50:45,213 | INFO     | [data] control thread has finished
[2025-11-23 02:51:22] 2025-11-23 01:50:45,622 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 02:51:22] 2025-11-23 01:50:45,767 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 02:51:22] 2025-11-23 01:50:45,923 | INFO     | [job] control thread has finished
[2025-11-23 02:51:22] 2025-11-23 01:50:45,953 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 02:51:22] 2025-11-23 01:50:46,218 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 02:51:22] 2025-11-23 01:50:46,658 | INFO     | [data] copytool_out thread has finished
[2025-11-23 02:51:22] 2025-11-23 01:50:46,958 | INFO     | [job] queue monitor thread has finished
[2025-11-23 02:51:22] 2025-11-23 01:50:50,228 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 02:51:22] 2025-11-23 01:51:12,378 | INFO     | [monitor] cgroup control has ended
[2025-11-23 02:51:22] 2025-11-23 01:51:13,447 | INFO     | PID=14157 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 02:51:22] 2025-11-23 01:51:13,447 | INFO     | .. there are 9 such processes running
[2025-11-23 02:51:22] 2025-11-23 01:51:13,447 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 02:51:22] 2025-11-23 01:51:13,447 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 02:51:22] 2025-11-23 01:51:13,447 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 02:51:22] 2025-11-23 01:51:13,489 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140300008642368)>', '<ExcThread(monitor, started 140299577837312)>']
[2025-11-23 02:51:22] 2025-11-23 01:51:14,453 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 02:51:22] 2025-11-23 01:51:14,454 | INFO     | [monitor] control thread has ended
[2025-11-23 02:51:22] 2025-11-23 01:51:18,515 | INFO     | all workflow threads have been joined
[2025-11-23 02:51:22] 2025-11-23 01:51:18,515 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 02:51:22] 2025-11-23 01:51:18,515 | INFO     | traces error code: 0
[2025-11-23 02:51:22] 2025-11-23 01:51:18,515 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 02:51:22] 2025-11-23 01:51:18,758 [wrapper] ==== pilot stdout END ====
[2025-11-23 02:51:22] 2025-11-23 01:51:18,767 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 02:51:22] 2025-11-23 01:51:18,776 [wrapper] pilotpid: 14157
[2025-11-23 02:51:22] 2025-11-23 01:51:18,794 [wrapper] Pilot exit status: 0
[2025-11-23 02:51:22] 2025-11-23 01:51:19,136 [wrapper] pandaids: 6891596329
[2025-11-23 02:51:22] 2025-11-23 01:51:19,819 [wrapper] cleanup supervisor_pilot 28720 14158
[2025-11-23 02:51:22] 2025-11-23 01:51:19,843 [wrapper] Test setup, not cleaning
[2025-11-23 02:51:22] 2025-11-23 01:51:19,890 [wrapper] apfmon messages muted
[2025-11-23 02:51:22] 2025-11-23 01:51:20,009 [wrapper] ==== wrapper stdout END ====
[2025-11-23 02:51:22] 2025-11-23 01:51:20,083 [wrapper] ==== wrapper stderr END ====
[2025-11-23 02:51:22]  *** Error codes and diagnostics ***
[2025-11-23 02:51:22]     "exeErrorCode": 0,
[2025-11-23 02:51:22]     "exeErrorDiag": "",
[2025-11-23 02:51:22]     "pilotErrorCode": 0,
[2025-11-23 02:51:22]     "pilotErrorDiag": "",
[2025-11-23 02:51:22]  *** Listing of results directory ***
[2025-11-23 02:51:22] total 1332996
[2025-11-23 02:51:22] -rw-r--r--. 1 boinc boinc    576529 Nov 18 19:36 pilot3.tar.gz
[2025-11-23 02:51:22] -rw-r--r--. 1 boinc boinc      5112 Nov 18 19:48 queuedata.json
[2025-11-23 02:51:22] -rwx------. 1 boinc boinc     36292 Nov 18 19:49 runpilot2-wrapper.sh
[2025-11-23 02:51:22] -rw-r--r--. 1 boinc boinc       100 Nov 22 01:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 02:51:22] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 01:11 run_atlas
[2025-11-23 02:51:22] -rw-r--r--. 1 boinc boinc       105 Nov 22 01:11 job.xml
[2025-11-23 02:51:22] -rw-r--r--. 1 boinc boinc      6389 Nov 22 01:11 init_data.xml
[2025-11-23 02:51:22] -rw-r--r--. 2 boinc boinc 407885812 Nov 22 01:11 EVNT.47493065._000778.pool.root.1
[2025-11-23 02:51:22] -rw-r--r--. 2 boinc boinc    590096 Nov 22 01:11 input.tar.gz
[2025-11-23 02:51:22] -rw-r--r--. 2 boinc boinc     15120 Nov 22 01:11 start_atlas.sh
[2025-11-23 02:51:22] drwxrwx--x. 2 boinc boinc        68 Nov 22 01:11 shared
[2025-11-23 02:51:22] -rw-r--r--. 1 boinc boinc         0 Nov 22 01:11 boinc_lockfile
[2025-11-23 02:51:22] -rw-r--r--. 1 boinc boinc      2772 Nov 22 01:12 pandaJob.out
[2025-11-23 02:51:22] -rw-------. 1 boinc boinc    989798 Nov 22 01:15 agis_schedconf.cvmfs.json
[2025-11-23 02:51:22] drwx------. 5 boinc boinc      4096 Nov 22 01:15 pilot3
[2025-11-23 02:51:22] -rw-r--r--. 1 boinc boinc       533 Nov 23 02:22 boinc_task_state.xml
[2025-11-23 02:51:22] -rw-------. 1 boinc boinc 923572453 Nov 23 02:49 HITS.47493068._006427.pool.root.1
[2025-11-23 02:51:22] -rw-------. 1 boinc boinc        95 Nov 23 02:50 pilot_heartbeat.json
[2025-11-23 02:51:22] -rw-------. 1 boinc boinc      1031 Nov 23 02:50 memory_monitor_summary.json
[2025-11-23 02:51:22] -rw-------. 1 boinc boinc   1526164 Nov 23 02:50 agis_ddmendpoints.agis.ALL.json
[2025-11-23 02:51:22] -rw-------. 1 boinc boinc   2566203 Nov 23 02:50 log.47493068._006427.job.log.tgz.1
[2025-11-23 02:51:22] -rw-------. 1 boinc boinc      8630 Nov 23 02:50 heartbeat.json
[2025-11-23 02:51:22] -rw-r--r--. 1 boinc boinc        29 Nov 23 02:50 wrapper_checkpoint.txt
[2025-11-23 02:51:22] -rw-r--r--. 1 boinc boinc      8192 Nov 23 02:50 boinc_mmap_file
[2025-11-23 02:51:22] -rw-------. 1 boinc boinc      5070 Nov 23 02:51 pilotlog.txt
[2025-11-23 02:51:22] -rw-------. 1 boinc boinc  12245082 Nov 23 02:51 log.47493068._006427.job.log.1
[2025-11-23 02:51:22] -rw-------. 1 boinc boinc       353 Nov 23 02:51 output.list
[2025-11-23 02:51:22] -rw-r--r--. 1 boinc boinc       620 Nov 23 02:51 runtime_log
[2025-11-23 02:51:22] -rw-------. 1 boinc boinc  14827520 Nov 23 02:51 result.tar.gz
[2025-11-23 02:51:22] -rw-r--r--. 1 boinc boinc      8703 Nov 23 02:51 runtime_log.err
[2025-11-23 02:51:22] -rw-------. 1 boinc boinc       662 Nov 23 02:51 egEMDm8wff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmUKGKDm07ZiUo.diag
[2025-11-23 02:51:22] -rw-r--r--. 1 boinc boinc     21506 Nov 23 02:51 stderr.txt
[2025-11-23 02:51:22] HITS file was successfully produced:
[2025-11-23 02:51:22] -rw-------. 1 boinc boinc 923572453 Nov 23 02:49 shared/HITS.pool.root.1
[2025-11-23 02:51:22]  *** Contents of shared directory: ***
[2025-11-23 02:51:22] total 1315332
[2025-11-23 02:51:22] -rw-r--r--. 2 boinc boinc 407885812 Nov 22 01:11 ATLAS.root_0
[2025-11-23 02:51:22] -rw-r--r--. 2 boinc boinc    590096 Nov 22 01:11 input.tar.gz
[2025-11-23 02:51:22] -rw-r--r--. 2 boinc boinc     15120 Nov 22 01:11 start_atlas.sh
[2025-11-23 02:51:22] -rw-------. 1 boinc boinc 923572453 Nov 23 02:49 HITS.pool.root.1
[2025-11-23 02:51:22] -rw-------. 1 boinc boinc  14827520 Nov 23 02:51 result.tar.gz
02:51:23 (10371): run_atlas exited; CPU time 340298.929952
02:51:23 (10371): called boinc_finish(0)

</stderr_txt>
]]>

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