Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:15:39 (16849): wrapper (7.7.26015): starting
21:15:39 (16849): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 21:15:39] Arguments: --nthreads 8
[2025-11-21 21:15:39] Threads: 8
[2025-11-21 21:15:39] Checking for CVMFS
[2025-11-21 21:15:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 21:15:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 21:15:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 21:15:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 21:15:42] 2.11.2.0 16343 278475 136756 153142 3 143 13567618 25165824 4364 130560 3 137973772 99.871 75294999 2910 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-21 21:15:42] CVMFS is ok
[2025-11-21 21:15:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 21:15:42] Checking for apptainer binary...
[2025-11-21 21:15:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 21:15:42] Running /usr/bin/apptainer --version
[2025-11-21 21:15:42] apptainer version 1.3.2-1.el7
[2025-11-21 21:15:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 21:15:44] cg-vwn436.simple-grid.lan
[2025-11-21 21:15:44] apptainer works
[2025-11-21 21:15:44] Set ATHENA_PROC_NUMBER=8
[2025-11-21 21:15:44] Set ATHENA_CORE_NUMBER=8
[2025-11-21 21:15:44] Starting ATLAS job with PandaID=6891597054
[2025-11-21 21:15:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 22:41:04]  *** The last 200 lines of the pilot log: ***
[2025-11-22 22:41:04] 2025-11-22 21:40:17,117 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 22:41:04] 2025-11-22 21:40:18,641 | INFO     | time since job start (91327s) is within the limit (172800.0s)
[2025-11-22 22:41:04] 2025-11-22 21:40:19,628 | INFO     | monitor loop #6087: job 0:6891597054 is in state 'finished'
[2025-11-22 22:41:04] 2025-11-22 21:40:19,628 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 22:41:04] 2025-11-22 21:40:20,650 | INFO     | time since job start (91329s) is within the limit (172800.0s)
[2025-11-22 22:41:04] 2025-11-22 21:40:22,136 | INFO     | monitor loop #6088: job 0:6891597054 is in state 'finished'
[2025-11-22 22:41:04] 2025-11-22 21:40:22,136 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 22:41:04] 2025-11-22 21:40:22,659 | INFO     | time since job start (91331s) is within the limit (172800.0s)
[2025-11-22 22:41:04] 2025-11-22 21:40:24,641 | INFO     | monitor loop #6089: job 0:6891597054 is in state 'finished'
[2025-11-22 22:41:04] 2025-11-22 21:40:24,641 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 22:41:04] 2025-11-22 21:40:24,669 | INFO     | time since job start (91333s) is within the limit (172800.0s)
[2025-11-22 22:41:04] 2025-11-22 21:40:24,669 | INFO     | 91343s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-22 22:41:04] 2025-11-22 21:40:26,678 | INFO     | time since job start (91335s) is within the limit (172800.0s)
[2025-11-22 22:41:04] 2025-11-22 21:40:27,145 | INFO     | monitor loop #6090: job 0:6891597054 is in state 'finished'
[2025-11-22 22:41:04] 2025-11-22 21:40:27,145 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 22:41:04] 2025-11-22 21:40:27,497 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 22:41:04] 2025-11-22 21:40:27,498 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-22 22:41:04] 2025-11-22 21:40:27,500 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6891597054/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 22:41:04] 2025-11-22 21:40:27,501 | INFO     | extracted standard info from prmon json
[2025-11-22 22:41:04] 2025-11-22 21:40:27,502 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 22:41:04] 2025-11-22 21:40:27,503 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 22:41:04] 2025-11-22 21:40:27,533 | INFO     | fitting pss+swap vs Time
[2025-11-22 22:41:04] 2025-11-22 21:40:27,536 | INFO     | sum of square deviations: 1031946543443.4106
[2025-11-22 22:41:04] 2025-11-22 21:40:27,598 | INFO     | sum of deviations: 2104825329801.7375
[2025-11-22 22:41:04] 2025-11-22 21:40:27,598 | INFO     | mean x: 1763801957.280643
[2025-11-22 22:41:04] 2025-11-22 21:40:27,598 | INFO     | mean y: 2848187.022103148
[2025-11-22 22:41:04] 2025-11-22 21:40:27,598 | INFO     | intersect: -3594717074.4984064
[2025-11-22 22:41:04] 2025-11-22 21:40:27,601 | INFO     | chi2: 18.20149742506382
[2025-11-22 22:41:04] 2025-11-22 21:40:27,603 | INFO     | sum of square deviations: 1021613946805.183
[2025-11-22 22:41:04] 2025-11-22 21:40:27,661 | INFO     | sum of deviations: 2591742123079.9688
[2025-11-22 22:41:04] 2025-11-22 21:40:27,661 | INFO     | mean x: 1763801804.7849462
[2025-11-22 22:41:04] 2025-11-22 21:40:27,662 | INFO     | mean y: 2855372.2842741935
[2025-11-22 22:41:04] 2025-11-22 21:40:27,662 | INFO     | intersect: -4471750175.654028
[2025-11-22 22:41:04] 2025-11-22 21:40:27,664 | INFO     | chi2: 15.015515273611769
[2025-11-22 22:41:04] 2025-11-22 21:40:27,664 | INFO     | current chi2=15.015515273611769 (change=17.503956279250364 %)
[2025-11-22 22:41:04] 2025-11-22 21:40:27,664 | INFO     | right removable region: 1487
[2025-11-22 22:41:04] 2025-11-22 21:40:27,666 | INFO     | sum of square deviations: 1021612780485.1824
[2025-11-22 22:41:04] 2025-11-22 21:40:27,734 | INFO     | sum of deviations: 1648385794607.543
[2025-11-22 22:41:04] 2025-11-22 21:40:27,734 | INFO     | mean x: 1763802109.7849462
[2025-11-22 22:41:04] 2025-11-22 21:40:27,735 | INFO     | mean y: 2854920.3454301073
[2025-11-22 22:41:04] 2025-11-22 21:40:27,735 | INFO     | intersect: -2843063217.9217224
[2025-11-22 22:41:04] 2025-11-22 21:40:27,737 | INFO     | chi2: 15.749579750635649
[2025-11-22 22:41:04] 2025-11-22 21:40:27,737 | INFO     | current chi2=15.749579750635649 (change=13.470966795577121 %)
[2025-11-22 22:41:04] 2025-11-22 21:40:27,737 | INFO     | left removable region: 10
[2025-11-22 22:41:04] 2025-11-22 21:40:27,739 | INFO     | sum of square deviations: 999123737844.3942
[2025-11-22 22:41:04] 2025-11-22 21:40:27,809 | INFO     | sum of deviations: 2137686325640.931
[2025-11-22 22:41:04] 2025-11-22 21:40:27,809 | INFO     | mean x: 1763802079.2904537
[2025-11-22 22:41:04] 2025-11-22 21:40:27,809 | INFO     | mean y: 2865296.7041299934
[2025-11-22 22:41:04] 2025-11-22 21:40:27,809 | INFO     | intersect: -3770897094.499774
[2025-11-22 22:41:04] 2025-11-22 21:40:27,811 | INFO     | chi2: 11.7434317966186
[2025-11-22 22:41:04] 2025-11-22 21:40:27,811 | INFO     | current memory leak: 2.14 B/s (using 1477 data points, chi2=11.74)
[2025-11-22 22:41:04] 2025-11-22 21:40:27,814 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-22 22:41:04] 2025-11-22 21:40:27,814 | INFO     | ..............................
[2025-11-22 22:41:04] 2025-11-22 21:40:27,814 | INFO     | . Timing measurements:
[2025-11-22 22:41:04] 2025-11-22 21:40:27,814 | INFO     | . get job = 0 s
[2025-11-22 22:41:04] 2025-11-22 21:40:27,814 | INFO     | . initial setup = 9 s
[2025-11-22 22:41:04] 2025-11-22 21:40:27,814 | INFO     | . payload setup = 12 s
[2025-11-22 22:41:04] 2025-11-22 21:40:27,814 | INFO     | . stage-in = 0 s
[2025-11-22 22:41:04] 2025-11-22 21:40:27,814 | INFO     | . payload execution = 91086 s
[2025-11-22 22:41:04] 2025-11-22 21:40:27,814 | INFO     | . stage-out = 6 s
[2025-11-22 22:41:04] 2025-11-22 21:40:27,814 | INFO     | . log creation = 2 s
[2025-11-22 22:41:04] 2025-11-22 21:40:27,815 | INFO     | ..............................
[2025-11-22 22:41:04] 2025-11-22 21:40:27,945 | INFO     | 
[2025-11-22 22:41:04] 2025-11-22 21:40:27,946 | INFO     | job summary report
[2025-11-22 22:41:04] 2025-11-22 21:40:27,946 | INFO     | --------------------------------------------------
[2025-11-22 22:41:04] 2025-11-22 21:40:27,946 | INFO     | PanDA job id: 6891597054
[2025-11-22 22:41:04] 2025-11-22 21:40:27,946 | INFO     | task id: 47493068
[2025-11-22 22:41:04] 2025-11-22 21:40:27,946 | INFO     | errors: (none)
[2025-11-22 22:41:04] 2025-11-22 21:40:27,946 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 22:41:04] 2025-11-22 21:40:27,946 | INFO     | pilot state: finished 
[2025-11-22 22:41:04] 2025-11-22 21:40:27,946 | INFO     | transexitcode: 0
[2025-11-22 22:41:04] 2025-11-22 21:40:27,946 | INFO     | exeerrorcode: 0
[2025-11-22 22:41:04] 2025-11-22 21:40:27,946 | INFO     | exeerrordiag: 
[2025-11-22 22:41:04] 2025-11-22 21:40:27,947 | INFO     | exitcode: 0
[2025-11-22 22:41:04] 2025-11-22 21:40:27,947 | INFO     | exitmsg: OK
[2025-11-22 22:41:04] 2025-11-22 21:40:27,947 | INFO     | cpuconsumptiontime: 338060 s
[2025-11-22 22:41:04] 2025-11-22 21:40:27,947 | INFO     | nevents: 1000
[2025-11-22 22:41:04] 2025-11-22 21:40:27,947 | INFO     | neventsw: 0
[2025-11-22 22:41:04] 2025-11-22 21:40:27,947 | INFO     | pid: 27237
[2025-11-22 22:41:04] 2025-11-22 21:40:27,947 | INFO     | pgrp: 27237
[2025-11-22 22:41:04] 2025-11-22 21:40:27,947 | INFO     | corecount: 8
[2025-11-22 22:41:04] 2025-11-22 21:40:27,947 | INFO     | event service: False
[2025-11-22 22:41:04] 2025-11-22 21:40:27,947 | INFO     | sizes: {0: 2297917, 1: 2298602, 2: 2298801, 13: 2298801, 24: 2298857, 35: 2298885, 45: 2299041, 56: 2299069, 67: 2299097, 78: 2299125, 88: 2299181, 95: 2299751, 99
[2025-11-22 22:41:04] 2025-11-22 21:40:27,948 | INFO     | --------------------------------------------------
[2025-11-22 22:41:04] 2025-11-22 21:40:27,948 | INFO     | 
[2025-11-22 22:41:04] 2025-11-22 21:40:27,948 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-22 22:41:04] 2025-11-22 21:40:28,074 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 22:41:04] 2025-11-22 21:40:28,075 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 22:41:04] 2025-11-22 21:40:28,075 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 22:41:04] 2025-11-22 21:40:28,075 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 22:41:04] 2025-11-22 21:40:28,075 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 22:41:04] 2025-11-22 21:40:28,075 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 22:41:04] 2025-11-22 21:40:28,075 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 22:41:04] 2025-11-22 21:40:28,075 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 22:41:04] 2025-11-22 21:40:28,075 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 22:41:04] 2025-11-22 21:40:28,076 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 22:41:04] 2025-11-22 21:40:28,076 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 22:41:04] 2025-11-22 21:40:28,076 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 22:41:04] 2025-11-22 21:40:28,076 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 22:41:04] 2025-11-22 21:40:28,076 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 22:41:04] 2025-11-22 21:40:28,076 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 22:41:04] 2025-11-22 21:40:28,076 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 22:41:04] 2025-11-22 21:40:28,076 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 22:41:04] 2025-11-22 21:40:28,076 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 22:41:04] 2025-11-22 21:40:28,076 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 22:41:04] 2025-11-22 21:40:28,076 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 22:41:04] 2025-11-22 21:40:28,077 | INFO     | job 6891597054 has completed (purged errors)
[2025-11-22 22:41:04] 2025-11-22 21:40:28,077 | INFO     | overall cleanup function is called
[2025-11-22 22:41:04] 2025-11-22 21:40:29,095 | INFO     | --- collectZombieJob: --- 10, [27237]
[2025-11-22 22:41:04] 2025-11-22 21:40:29,095 | INFO     | zombie collector waiting for pid 27237
[2025-11-22 22:41:04] 2025-11-22 21:40:29,095 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 22:41:04] 2025-11-22 21:40:29,095 | INFO     | collected zombie processes
[2025-11-22 22:41:04] 2025-11-22 21:40:29,096 | INFO     | will attempt to kill all subprocesses of pid=27237
[2025-11-22 22:41:04] 2025-11-22 21:40:29,222 | INFO     | process IDs to be killed: [27237] (in reverse order)
[2025-11-22 22:41:04] 2025-11-22 21:40:30,108 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 22:41:04] 2025-11-22 21:40:30,109 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 22:41:04] 2025-11-22 21:40:30,112 | INFO     | did not find any defunct processes belonging to 27237
[2025-11-22 22:41:04] 2025-11-22 21:40:30,115 | INFO     | did not find any defunct processes belonging to 27237
[2025-11-22 22:41:04] 2025-11-22 21:40:30,191 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 22:41:04] 2025-11-22 21:40:30,191 | INFO     | ready for new job
[2025-11-22 22:41:04] 2025-11-22 21:40:30,192 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 22:41:04] 2025-11-22 21:40:30,198 | INFO     | ***************************************
[2025-11-22 22:41:04] 2025-11-22 21:40:30,198 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 22:41:04] 2025-11-22 21:40:30,198 | INFO     | ***************************************
[2025-11-22 22:41:04] 2025-11-22 21:40:30,199 | INFO     | 
[2025-11-22 22:41:04] 2025-11-22 21:40:30,199 | INFO     | pilot is running in a VM
[2025-11-22 22:41:04] 2025-11-22 21:40:30,199 | INFO     | architecture information:
[2025-11-22 22:41:04] 2025-11-22 21:40:30,216 | INFO     | executing command: cat /etc/os-release
[2025-11-22 22:41:04] 2025-11-22 21:40:30,454 | INFO     | cat /etc/os-release:
[2025-11-22 22:41:04] NAME="CentOS Linux"
[2025-11-22 22:41:04] VERSION="7 (Core)"
[2025-11-22 22:41:04] ID="centos"
[2025-11-22 22:41:04] ID_LIKE="rhel fedora"
[2025-11-22 22:41:04] VERSION_ID="7"
[2025-11-22 22:41:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 22:41:04] ANSI_COLOR="0;31"
[2025-11-22 22:41:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 22:41:04] HOME_URL="https://www.centos.org/"
[2025-11-22 22:41:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 22:41:04] 
[2025-11-22 22:41:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 22:41:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 22:41:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 22:41:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 22:41:04] 
[2025-11-22 22:41:04] 2025-11-22 21:40:30,455 | INFO     | ***************************************
[2025-11-22 22:41:04] 2025-11-22 21:40:30,958 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-22 22:41:04] 2025-11-22 21:40:31,230 | INFO     | sufficient remaining disk space (495239299072 B)
[2025-11-22 22:41:04] 2025-11-22 21:40:31,230 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 22:41:04] 2025-11-22 21:40:31,231 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 22:41:04] 2025-11-22 21:40:31,231 | INFO     | update_server=False
[2025-11-22 22:41:04] 2025-11-22 21:40:31,231 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 22:41:04] 2025-11-22 21:40:31,232 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 22:41:04] 2025-11-22 21:40:31,232 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 22:41:04] 2025-11-22 21:40:31,233 | INFO     | aborting loop
[2025-11-22 22:41:04] 2025-11-22 21:40:31,260 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 22:41:04] 2025-11-22 21:40:31,647 | INFO     | all payload control threads have been joined
[2025-11-22 22:41:04] 2025-11-22 21:40:31,875 | INFO     | all data control threads have been joined
[2025-11-22 22:41:04] 2025-11-22 21:40:32,237 | INFO     | [job] retrieve thread has finished
[2025-11-22 22:41:04] 2025-11-22 21:40:32,239 | INFO     | [job] job monitor thread has finished
[2025-11-22 22:41:04] 2025-11-22 21:40:32,404 | INFO     | [payload] validate_post thread has finished
[2025-11-22 22:41:04] 2025-11-22 21:40:32,473 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 22:41:04] 2025-11-22 21:40:32,623 | INFO     | all job control threads have been joined
[2025-11-22 22:41:04] 2025-11-22 21:40:32,653 | INFO     | [payload] control thread has finished
[2025-11-22 22:41:04] 2025-11-22 21:40:32,738 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 22:41:04] 2025-11-22 21:40:32,791 | INFO     | [data] copytool_in thread has finished
[2025-11-22 22:41:04] 2025-11-22 21:40:32,792 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 22:41:04] 2025-11-22 21:40:32,880 | INFO     | [data] control thread has finished
[2025-11-22 22:41:04] 2025-11-22 21:40:32,961 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 22:41:04] 2025-11-22 21:40:33,220 | INFO     | [job] validate thread has finished
[2025-11-22 22:41:04] 2025-11-22 21:40:33,241 | INFO     | [data] copytool_out thread has finished
[2025-11-22 22:41:04] 2025-11-22 21:40:33,256 | INFO     | [payload] failed_post thread has finished
[2025-11-22 22:41:04] 2025-11-22 21:40:33,496 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 22:41:04] 2025-11-22 21:40:33,629 | INFO     | [job] control thread has finished
[2025-11-22 22:41:04] 2025-11-22 21:40:33,967 | INFO     | [job] queue monitor thread has finished
[2025-11-22 22:41:04] 2025-11-22 21:40:35,269 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 22:41:04] 2025-11-22 21:40:50,333 | INFO     | [monitor] cgroup control has ended
[2025-11-22 22:41:04] 2025-11-22 21:40:50,341 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140199748536128)>', '<ExcThread(monitor, started 140199292016384)>']
[2025-11-22 22:41:04] 2025-11-22 21:40:55,366 | INFO     | all workflow threads have been joined
[2025-11-22 22:41:04] 2025-11-22 21:40:55,366 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 22:41:04] 2025-11-22 21:40:55,366 | INFO     | traces error code: 0
[2025-11-22 22:41:04] 2025-11-22 21:40:55,367 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 22:41:04] 2025-11-22 21:40:59,922 | INFO     | PID=20617 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 22:41:04] 2025-11-22 21:40:59,923 | INFO     | .. there are 9 such processes running
[2025-11-22 22:41:04] 2025-11-22 21:40:59,923 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 22:41:04] 2025-11-22 21:40:59,923 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 22:41:04] 2025-11-22 21:40:59,923 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 22:41:04] 2025-11-22 21:40:59,923 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 22:41:04] 2025-11-22 21:40:59,923 | CRITICAL | thread 'MainThread' is not alive
[2025-11-22 22:41:04] 2025-11-22 21:40:59,923 | INFO     | [monitor] control thread has ended
[2025-11-22 22:41:04] 2025-11-22 21:41:00,366 [wrapper] ==== pilot stdout END ====
[2025-11-22 22:41:04] 2025-11-22 21:41:00,475 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 22:41:04] 2025-11-22 21:41:00,601 [wrapper] pilotpid: 20617
[2025-11-22 22:41:04] 2025-11-22 21:41:00,654 [wrapper] Pilot exit status: 0
[2025-11-22 22:41:04] 2025-11-22 21:41:00,927 [wrapper] pandaids: 6891597054
[2025-11-22 22:41:04] 2025-11-22 21:41:01,808 [wrapper] cleanup supervisor_pilot 32181 20618
[2025-11-22 22:41:04] 2025-11-22 21:41:01,825 [wrapper] Test setup, not cleaning
[2025-11-22 22:41:04] 2025-11-22 21:41:01,831 [wrapper] apfmon messages muted
[2025-11-22 22:41:04] 2025-11-22 21:41:01,919 [wrapper] ==== wrapper stdout END ====
[2025-11-22 22:41:04] 2025-11-22 21:41:02,049 [wrapper] ==== wrapper stderr END ====
[2025-11-22 22:41:04]  *** Error codes and diagnostics ***
[2025-11-22 22:41:04]     "exeErrorCode": 0,
[2025-11-22 22:41:04]     "exeErrorDiag": "",
[2025-11-22 22:41:04]     "pilotErrorCode": 0,
[2025-11-22 22:41:04]     "pilotErrorDiag": "",
[2025-11-22 22:41:04]  *** Listing of results directory ***
[2025-11-22 22:41:04] total 1331720
[2025-11-22 22:41:04] -rw-r--r--. 1 boinc boinc    576529 Nov 18 19:36 pilot3.tar.gz
[2025-11-22 22:41:04] -rwx------. 1 boinc boinc     36292 Nov 18 19:48 runpilot2-wrapper.sh
[2025-11-22 22:41:04] -rw-r--r--. 1 boinc boinc      5112 Nov 18 19:48 queuedata.json
[2025-11-22 22:41:04] -rw-r--r--. 1 boinc boinc       100 Nov 21 21:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 22:41:04] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 21:15 run_atlas
[2025-11-22 22:41:04] -rw-r--r--. 1 boinc boinc       105 Nov 21 21:15 job.xml
[2025-11-22 22:41:04] -rw-r--r--. 1 boinc boinc      6389 Nov 21 21:15 init_data.xml
[2025-11-22 22:41:04] -rw-r--r--. 2 boinc boinc 412112374 Nov 21 21:15 EVNT.47493065._000789.pool.root.1
[2025-11-22 22:41:04] -rw-r--r--. 2 boinc boinc     15120 Nov 21 21:15 start_atlas.sh
[2025-11-22 22:41:04] drwxrwx--x. 2 boinc boinc        68 Nov 21 21:15 shared
[2025-11-22 22:41:04] -rw-r--r--. 2 boinc boinc    590097 Nov 21 21:15 input.tar.gz
[2025-11-22 22:41:04] -rw-r--r--. 1 boinc boinc         0 Nov 21 21:15 boinc_lockfile
[2025-11-22 22:41:04] -rw-r--r--. 1 boinc boinc      2772 Nov 21 21:15 pandaJob.out
[2025-11-22 22:41:04] -rw-------. 1 boinc boinc    989798 Nov 21 21:18 agis_schedconf.cvmfs.json
[2025-11-22 22:41:04] drwx------. 5 boinc boinc      4096 Nov 21 21:18 pilot3
[2025-11-22 22:41:04] -rw-r--r--. 1 boinc boinc       533 Nov 22 22:07 boinc_task_state.xml
[2025-11-22 22:41:04] -rw-------. 1 boinc boinc 918276331 Nov 22 22:37 HITS.47493068._006533.pool.root.1
[2025-11-22 22:41:04] -rw-------. 1 boinc boinc      1031 Nov 22 22:38 memory_monitor_summary.json
[2025-11-22 22:41:04] -rw-------. 1 boinc boinc   1526164 Nov 22 22:38 agis_ddmendpoints.agis.ALL.json
[2025-11-22 22:41:04] -rw-------. 1 boinc boinc   2558317 Nov 22 22:38 log.47493068._006533.job.log.tgz.1
[2025-11-22 22:41:04] -rw-------. 1 boinc boinc        95 Nov 22 22:40 pilot_heartbeat.json
[2025-11-22 22:41:04] -rw-------. 1 boinc boinc      7944 Nov 22 22:40 heartbeat.json
[2025-11-22 22:41:04] -rw-r--r--. 1 boinc boinc        29 Nov 22 22:40 wrapper_checkpoint.txt
[2025-11-22 22:41:04] -rw-r--r--. 1 boinc boinc      8192 Nov 22 22:40 boinc_mmap_file
[2025-11-22 22:41:04] -rw-------. 1 boinc boinc       890 Nov 22 22:40 pilotlog.txt
[2025-11-22 22:41:04] -rw-------. 1 boinc boinc  12133505 Nov 22 22:41 log.47493068._006533.job.log.1
[2025-11-22 22:41:04] -rw-------. 1 boinc boinc       353 Nov 22 22:41 output.list
[2025-11-22 22:41:04] -rw-r--r--. 1 boinc boinc       620 Nov 22 22:41 runtime_log
[2025-11-22 22:41:04] -rw-------. 1 boinc boinc  14714880 Nov 22 22:41 result.tar.gz
[2025-11-22 22:41:04] -rw-------. 1 boinc boinc       662 Nov 22 22:41 CrfKDmAwff8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm5iFKDmvJhHQo.diag
[2025-11-22 22:41:04] -rw-r--r--. 1 boinc boinc      8703 Nov 22 22:41 runtime_log.err
[2025-11-22 22:41:04] -rw-r--r--. 1 boinc boinc     21436 Nov 22 22:41 stderr.txt
[2025-11-22 22:41:04] HITS file was successfully produced:
[2025-11-22 22:41:04] -rw-------. 1 boinc boinc 918276331 Nov 22 22:37 shared/HITS.pool.root.1
[2025-11-22 22:41:04]  *** Contents of shared directory: ***
[2025-11-22 22:41:04] total 1314180
[2025-11-22 22:41:04] -rw-r--r--. 2 boinc boinc 412112374 Nov 21 21:15 ATLAS.root_0
[2025-11-22 22:41:04] -rw-r--r--. 2 boinc boinc     15120 Nov 21 21:15 start_atlas.sh
[2025-11-22 22:41:04] -rw-r--r--. 2 boinc boinc    590097 Nov 21 21:15 input.tar.gz
[2025-11-22 22:41:04] -rw-------. 1 boinc boinc 918276331 Nov 22 22:37 HITS.pool.root.1
[2025-11-22 22:41:04] -rw-------. 1 boinc boinc  14714880 Nov 22 22:41 result.tar.gz
22:41:05 (16849): run_atlas exited; CPU time 338602.271656
22:41:05 (16849): called boinc_finish(0)

</stderr_txt>
]]>

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