Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:41:09 (3027774): wrapper (7.7.26015): starting
17:41:09 (3027774): wrapper: running run_atlas (--nthreads 4)
[2025-11-23 17:41:09] Arguments: --nthreads 4
[2025-11-23 17:41:09] Threads: 4
[2025-11-23 17:41:09] Checking for CVMFS
[2025-11-23 17:41:09] No cvmfs_config command found, will try listing directly
[2025-11-23 17:41:10] CVMFS is ok
[2025-11-23 17:41:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 17:41:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 17:41:10] Further information can be found at the LHC@home message board.
[2025-11-23 17:41:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 17:41:10] Checking for apptainer binary...
[2025-11-23 17:41:10] which: no apptainer in ((null))
[2025-11-23 17:41:10] apptainer is not installed, using version from CVMFS
[2025-11-23 17:41:10] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 17:41:10] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot112/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2025-11-23 17:41:10] apptainer works
[2025-11-23 17:41:10] Set ATHENA_PROC_NUMBER=4
[2025-11-23 17:41:10] Set ATHENA_CORE_NUMBER=4
[2025-11-23 17:41:10] Starting ATLAS job with PandaID=6891564319
[2025-11-23 17:41:10] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot112/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 10:45:18]  *** The last 200 lines of the pilot log: ***
[2025-11-24 10:45:18] 2025-11-24 09:43:14,830 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2700.0378124999993
[2025-11-24 10:45:18] 2025-11-24 09:43:14,843 | INFO     | monitor loop #4078: job 0:6891564319 is in state 'finished'
[2025-11-24 10:45:18] 2025-11-24 09:43:14,844 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 10:45:18] 2025-11-24 09:43:14,855 | INFO     | using path: /scratch/boinc/var/slot112/slots/0/PanDA_Pilot-6891564319/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 10:45:18] 2025-11-24 09:43:14,855 | INFO     | extracted standard info from prmon json
[2025-11-24 10:45:18] 2025-11-24 09:43:14,856 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 10:45:18] 2025-11-24 09:43:14,856 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 10:45:18] 2025-11-24 09:43:14,873 | INFO     | fitting pss+swap vs Time
[2025-11-24 10:45:18] 2025-11-24 09:43:14,874 | INFO     | sum of square deviations: 313819499158.32654
[2025-11-24 10:45:18] 2025-11-24 09:43:14,899 | INFO     | sum of deviations: 960026936692.1819
[2025-11-24 10:45:18] 2025-11-24 09:43:14,899 | INFO     | mean x: 1763946727.5258963
[2025-11-24 10:45:18] 2025-11-24 09:43:14,899 | INFO     | mean y: 2281012.185258964
[2025-11-24 10:45:18] 2025-11-24 09:43:14,899 | INFO     | intersect: -5393930433.746983
[2025-11-24 10:45:18] 2025-11-24 09:43:14,900 | INFO     | chi2: 3.493933773965811
[2025-11-24 10:45:18] 2025-11-24 09:43:14,902 | INFO     | sum of square deviations: 309154284733.32355
[2025-11-24 10:45:18] 2025-11-24 09:43:14,925 | INFO     | sum of deviations: 1124088992271.2576
[2025-11-24 10:45:18] 2025-11-24 09:43:14,925 | INFO     | mean x: 1763946575.026026
[2025-11-24 10:45:18] 2025-11-24 09:43:14,925 | INFO     | mean y: 2286369.067067067
[2025-11-24 10:45:18] 2025-11-24 09:43:14,925 | INFO     | intersect: -6411446274.657192
[2025-11-24 10:45:18] 2025-11-24 09:43:14,926 | INFO     | chi2: 1.9879854620979807
[2025-11-24 10:45:18] 2025-11-24 09:43:14,926 | INFO     | current chi2=1.9879854620979807 (change=43.101798983399 %)
[2025-11-24 10:45:18] 2025-11-24 09:43:14,927 | INFO     | sum of square deviations: 304535536295.81964
[2025-11-24 10:45:18] 2025-11-24 09:43:14,952 | INFO     | sum of deviations: 1113049488734.8608
[2025-11-24 10:45:18] 2025-11-24 09:43:14,952 | INFO     | mean x: 1763946422.526157
[2025-11-24 10:45:18] 2025-11-24 09:43:14,952 | INFO     | mean y: 2286003.7937625754
[2025-11-24 10:45:18] 2025-11-24 09:43:14,952 | INFO     | intersect: -6444776587.421399
[2025-11-24 10:45:18] 2025-11-24 09:43:14,953 | INFO     | chi2: 1.9819249517296114
[2025-11-24 10:45:18] 2025-11-24 09:43:14,953 | INFO     | current chi2=1.9819249517296114 (change=0.3048568756621319 %)
[2025-11-24 10:45:18] 2025-11-24 09:43:14,953 | INFO     | right removable region: 993
[2025-11-24 10:45:18] 2025-11-24 09:43:14,954 | INFO     | sum of square deviations: 309154268873.3234
[2025-11-24 10:45:18] 2025-11-24 09:43:14,979 | INFO     | sum of deviations: 767491467402.3876
[2025-11-24 10:45:18] 2025-11-24 09:43:14,979 | INFO     | mean x: 1763946880.026026
[2025-11-24 10:45:18] 2025-11-24 09:43:14,979 | INFO     | mean y: 2287296.792792793
[2025-11-24 10:45:18] 2025-11-24 09:43:14,979 | INFO     | intersect: -4376802095.389484
[2025-11-24 10:45:18] 2025-11-24 09:43:14,981 | INFO     | chi2: 1.6063799109121042
[2025-11-24 10:45:18] 2025-11-24 09:43:14,981 | INFO     | current chi2=1.6063799109121042 (change=54.02374472917463 %)
[2025-11-24 10:45:18] 2025-11-24 09:43:14,982 | INFO     | sum of square deviations: 304535565757.87134
[2025-11-24 10:45:18] 2025-11-24 09:43:14,995 | INFO     | time since job start (61308s) is within the limit (172800.0s)
[2025-11-24 10:45:18] 2025-11-24 09:43:15,007 | INFO     | sum of deviations: 741971354953.5997
[2025-11-24 10:45:18] 2025-11-24 09:43:15,008 | INFO     | mean x: 1763947032.525151
[2025-11-24 10:45:18] 2025-11-24 09:43:15,008 | INFO     | mean y: 2288138.8360160966
[2025-11-24 10:45:18] 2025-11-24 09:43:15,008 | INFO     | intersect: -4295397638.954749
[2025-11-24 10:45:18] 2025-11-24 09:43:15,009 | INFO     | chi2: 1.5971394727769108
[2025-11-24 10:45:18] 2025-11-24 09:43:15,009 | INFO     | current chi2=1.5971394727769108 (change=0.575233671214591 %)
[2025-11-24 10:45:18] 2025-11-24 09:43:15,009 | INFO     | left removable region: 20
[2025-11-24 10:45:18] 2025-11-24 09:43:15,010 | INFO     | sum of square deviations: 285638950652.35767
[2025-11-24 10:45:18] 2025-11-24 09:43:15,033 | INFO     | sum of deviations: 866846254309.0398
[2025-11-24 10:45:18] 2025-11-24 09:43:15,034 | INFO     | mean x: 1763947002.0256937
[2025-11-24 10:45:18] 2025-11-24 09:43:15,034 | INFO     | mean y: 2294026.238437821
[2025-11-24 10:45:18] 2025-11-24 09:43:15,034 | INFO     | intersect: -5350865436.129906
[2025-11-24 10:45:18] 2025-11-24 09:43:15,035 | INFO     | chi2: 0.0775738845426401
[2025-11-24 10:45:18] 2025-11-24 09:43:15,035 | INFO     | current memory leak: 3.03 B/s (using 973 data points, chi2=0.08)
[2025-11-24 10:45:18] 2025-11-24 09:43:15,036 | INFO     | could have reported an average CPU frequency of 2678 MHz (37 samples)
[2025-11-24 10:45:18] 2025-11-24 09:43:15,037 | INFO     | ..............................
[2025-11-24 10:45:18] 2025-11-24 09:43:15,037 | INFO     | . Timing measurements:
[2025-11-24 10:45:18] 2025-11-24 09:43:15,037 | INFO     | . get job = 0 s
[2025-11-24 10:45:18] 2025-11-24 09:43:15,037 | INFO     | . initial setup = 1 s
[2025-11-24 10:45:18] 2025-11-24 09:43:15,037 | INFO     | . payload setup = 15 s
[2025-11-24 10:45:18] 2025-11-24 09:43:15,037 | INFO     | . stage-in = 0 s
[2025-11-24 10:45:18] 2025-11-24 09:43:15,037 | INFO     | . payload execution = 61256 s
[2025-11-24 10:45:18] 2025-11-24 09:43:15,037 | INFO     | . stage-out = 2 s
[2025-11-24 10:45:18] 2025-11-24 09:43:15,037 | INFO     | . log creation = 0 s
[2025-11-24 10:45:18] 2025-11-24 09:43:15,037 | INFO     | ..............................
[2025-11-24 10:45:18] 2025-11-24 09:43:15,138 | INFO     | 
[2025-11-24 10:45:18] 2025-11-24 09:43:15,138 | INFO     | job summary report
[2025-11-24 10:45:18] 2025-11-24 09:43:15,138 | INFO     | --------------------------------------------------
[2025-11-24 10:45:18] 2025-11-24 09:43:15,138 | INFO     | PanDA job id: 6891564319
[2025-11-24 10:45:18] 2025-11-24 09:43:15,138 | INFO     | task id: 47493068
[2025-11-24 10:45:18] 2025-11-24 09:43:15,138 | INFO     | errors: (none)
[2025-11-24 10:45:18] 2025-11-24 09:43:15,138 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 10:45:18] 2025-11-24 09:43:15,138 | INFO     | pilot state: finished 
[2025-11-24 10:45:18] 2025-11-24 09:43:15,139 | INFO     | transexitcode: 0
[2025-11-24 10:45:18] 2025-11-24 09:43:15,139 | INFO     | exeerrorcode: 0
[2025-11-24 10:45:18] 2025-11-24 09:43:15,139 | INFO     | exeerrordiag: 
[2025-11-24 10:45:18] 2025-11-24 09:43:15,139 | INFO     | exitcode: 0
[2025-11-24 10:45:18] 2025-11-24 09:43:15,139 | INFO     | exitmsg: OK
[2025-11-24 10:45:18] 2025-11-24 09:43:15,139 | INFO     | cpuconsumptiontime: 243150 s
[2025-11-24 10:45:18] 2025-11-24 09:43:15,139 | INFO     | nevents: 1000
[2025-11-24 10:45:18] 2025-11-24 09:43:15,139 | INFO     | neventsw: 0
[2025-11-24 10:45:18] 2025-11-24 09:43:15,139 | INFO     | pid: 3039975
[2025-11-24 10:45:18] 2025-11-24 09:43:15,139 | INFO     | pgrp: 3039975
[2025-11-24 10:45:18] 2025-11-24 09:43:15,139 | INFO     | corecount: 4
[2025-11-24 10:45:18] 2025-11-24 09:43:15,139 | INFO     | event service: False
[2025-11-24 10:45:18] 2025-11-24 09:43:15,140 | INFO     | sizes: {0: 2298637, 1: 2298836, 10: 2299098, 12: 2299126, 61275: 2354684, 61276: 2354683, 61279: 2363941, 61288: 2364131}
[2025-11-24 10:45:18] 2025-11-24 09:43:15,140 | INFO     | --------------------------------------------------
[2025-11-24 10:45:18] 2025-11-24 09:43:15,140 | INFO     | 
[2025-11-24 10:45:18] 2025-11-24 09:43:15,140 | INFO     | executing command: ls -lF /scratch/boinc/var/slot112/slots/0
[2025-11-24 10:45:18] 2025-11-24 09:43:15,171 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 10:45:18] 2025-11-24 09:43:15,172 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 10:45:18] 2025-11-24 09:43:15,172 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 10:45:18] 2025-11-24 09:43:15,172 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 10:45:18] 2025-11-24 09:43:15,172 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 10:45:18] 2025-11-24 09:43:15,172 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 10:45:18] 2025-11-24 09:43:15,172 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 10:45:18] 2025-11-24 09:43:15,173 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 10:45:18] 2025-11-24 09:43:15,173 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 10:45:18] 2025-11-24 09:43:15,173 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 10:45:18] 2025-11-24 09:43:15,173 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 10:45:18] 2025-11-24 09:43:15,173 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 10:45:18] 2025-11-24 09:43:15,173 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 10:45:18] 2025-11-24 09:43:15,173 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 10:45:18] 2025-11-24 09:43:15,173 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 10:45:18] 2025-11-24 09:43:15,173 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 10:45:18] 2025-11-24 09:43:15,174 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 10:45:18] 2025-11-24 09:43:15,174 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 10:45:18] 2025-11-24 09:43:15,174 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 10:45:18] 2025-11-24 09:43:15,174 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 10:45:18] 2025-11-24 09:43:15,174 | INFO     | job 6891564319 has completed (purged errors)
[2025-11-24 10:45:18] 2025-11-24 09:43:15,175 | INFO     | overall cleanup function is called
[2025-11-24 10:45:18] 2025-11-24 09:43:16,191 | INFO     | --- collectZombieJob: --- 10, [3039975]
[2025-11-24 10:45:18] 2025-11-24 09:43:16,191 | INFO     | zombie collector waiting for pid 3039975
[2025-11-24 10:45:18] 2025-11-24 09:43:16,191 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 10:45:18] 2025-11-24 09:43:16,191 | INFO     | collected zombie processes
[2025-11-24 10:45:18] 2025-11-24 09:43:16,191 | INFO     | will attempt to kill all subprocesses of pid=3039975
[2025-11-24 10:45:18] 2025-11-24 09:43:17,037 | INFO     | process IDs to be killed: [3039975] (in reverse order)
[2025-11-24 10:45:18] 2025-11-24 09:43:17,300 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 10:45:18] 2025-11-24 09:43:17,300 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 10:45:18] 2025-11-24 09:43:17,337 | INFO     | did not find any defunct processes belonging to 3039975
[2025-11-24 10:45:18] 2025-11-24 09:43:17,371 | INFO     | did not find any defunct processes belonging to 3039975
[2025-11-24 10:45:18] 2025-11-24 09:43:17,373 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 10:45:18] 2025-11-24 09:43:17,373 | INFO     | ready for new job
[2025-11-24 10:45:18] 2025-11-24 09:43:17,373 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 10:45:18] 2025-11-24 09:43:17,380 | INFO     | ***************************************
[2025-11-24 10:45:18] 2025-11-24 09:43:17,383 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 10:45:18] 2025-11-24 09:43:17,383 | INFO     | ***************************************
[2025-11-24 10:45:18] 2025-11-24 09:43:17,383 | INFO     | 
[2025-11-24 10:45:18] 2025-11-24 09:43:17,392 | INFO     | architecture information:
[2025-11-24 10:45:18] 2025-11-24 09:43:17,392 | INFO     | executing command: cat /etc/os-release
[2025-11-24 10:45:18] 2025-11-24 09:43:17,415 | INFO     | cat /etc/os-release:
[2025-11-24 10:45:18] NAME="CentOS Linux"
[2025-11-24 10:45:18] VERSION="7 (Core)"
[2025-11-24 10:45:18] ID="centos"
[2025-11-24 10:45:18] ID_LIKE="rhel fedora"
[2025-11-24 10:45:18] VERSION_ID="7"
[2025-11-24 10:45:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 10:45:18] ANSI_COLOR="0;31"
[2025-11-24 10:45:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 10:45:18] HOME_URL="https://www.centos.org/"
[2025-11-24 10:45:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 10:45:18] 
[2025-11-24 10:45:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 10:45:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 10:45:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 10:45:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 10:45:18] 
[2025-11-24 10:45:18] 2025-11-24 09:43:17,416 | INFO     | ***************************************
[2025-11-24 10:45:18] 2025-11-24 09:43:17,919 | INFO     | executing command: df -mP /scratch/boinc/var/slot112/slots/0
[2025-11-24 10:45:18] 2025-11-24 09:43:17,942 | INFO     | sufficient remaining disk space (3293144154112 B)
[2025-11-24 10:45:18] 2025-11-24 09:43:17,942 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 10:45:18] 2025-11-24 09:43:17,943 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 10:45:18] 2025-11-24 09:43:17,943 | INFO     | update_server=False
[2025-11-24 10:45:18] 2025-11-24 09:43:17,943 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 10:45:18] 2025-11-24 09:43:18,352 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 10:45:18] 2025-11-24 09:43:18,352 | INFO     | aborting loop
[2025-11-24 10:45:18] 2025-11-24 09:43:18,451 | INFO     | all payload control threads have been joined
[2025-11-24 10:45:18] 2025-11-24 09:43:18,758 | INFO     | all data control threads have been joined
[2025-11-24 10:45:18] 2025-11-24 09:43:18,946 | INFO     | [payload] failed_post thread has finished
[2025-11-24 10:45:18] 2025-11-24 09:43:18,948 | INFO     | [job] retrieve thread has finished
[2025-11-24 10:45:18] 2025-11-24 09:43:18,998 | INFO     | [data] copytool_in thread has finished
[2025-11-24 10:45:18] 2025-11-24 09:43:19,004 | INFO     | all job control threads have been joined
[2025-11-24 10:45:18] 2025-11-24 09:43:19,224 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 10:45:18] 2025-11-24 09:43:19,358 | INFO     | [job] job monitor thread has finished
[2025-11-24 10:45:18] 2025-11-24 09:43:19,456 | INFO     | [payload] control thread has finished
[2025-11-24 10:45:18] 2025-11-24 09:43:19,494 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 10:45:18] 2025-11-24 09:43:19,494 | INFO     | [job] validate thread has finished
[2025-11-24 10:45:18] 2025-11-24 09:43:19,599 | INFO     | [payload] validate_post thread has finished
[2025-11-24 10:45:18] 2025-11-24 09:43:19,763 | INFO     | [data] control thread has finished
[2025-11-24 10:45:18] 2025-11-24 09:43:19,922 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 10:45:18] 2025-11-24 09:43:20,009 | INFO     | [job] control thread has finished
[2025-11-24 10:45:18] 2025-11-24 09:43:20,149 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 10:45:18] 2025-11-24 09:43:20,201 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 10:45:18] 2025-11-24 09:43:21,154 | INFO     | [job] queue monitor thread has finished
[2025-11-24 10:45:18] 2025-11-24 09:43:21,229 | INFO     | [data] copytool_out thread has finished
[2025-11-24 10:45:18] 2025-11-24 09:43:21,328 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 10:45:18] 2025-11-24 09:43:25,334 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 10:45:18] 2025-11-24 09:43:28,362 | INFO     | job.realtimelogging is not enabled
[2025-11-24 10:45:18] 2025-11-24 09:43:29,367 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 10:45:18] 2025-11-24 09:43:49,123 | INFO     | PID=3031891 has CPU usage=13.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-24 10:45:18] 2025-11-24 09:43:49,123 | INFO     | .. there are 10 such processes running
[2025-11-24 10:45:18] 2025-11-24 09:43:49,123 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 10:45:18] 2025-11-24 09:43:49,123 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 10:45:18] 2025-11-24 09:43:49,123 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 10:45:18] 2025-11-24 09:44:08,706 | INFO     | [monitor] cgroup control has ended
[2025-11-24 10:45:18] 2025-11-24 09:44:08,791 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22531598608192)>', '<ExcThread(monitor, started 22531358553856)>']
[2025-11-24 10:45:18] 2025-11-24 09:44:09,219 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 10:45:18] 2025-11-24 09:44:09,220 | INFO     | [monitor] control thread has ended
[2025-11-24 10:45:18] 2025-11-24 09:44:13,815 | INFO     | all workflow threads have been joined
[2025-11-24 10:45:18] 2025-11-24 09:44:13,816 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 10:45:18] 2025-11-24 09:44:13,819 | INFO     | traces error code: 0
[2025-11-24 10:45:18] 2025-11-24 09:44:13,819 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 10:45:18] 2025-11-24 09:44:13,964 [wrapper] ==== pilot stdout END ====
[2025-11-24 10:45:18] 2025-11-24 09:44:13,968 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 10:45:18] 2025-11-24 09:44:13,973 [wrapper] pilotpid: 3031891
[2025-11-24 10:45:18] 2025-11-24 09:44:13,976 [wrapper] Pilot exit status: 0
[2025-11-24 10:45:18] 2025-11-24 09:44:13,992 [wrapper] pandaids: 6891564319
[2025-11-24 10:45:18] 2025-11-24 09:44:14,183 [wrapper] cleanup supervisor_pilot  648829 3031892
[2025-11-24 10:45:18] 2025-11-24 09:44:14,187 [wrapper] Test setup, not cleaning
[2025-11-24 10:45:18] 2025-11-24 09:44:14,191 [wrapper] apfmon messages muted
[2025-11-24 10:45:18] 2025-11-24 09:44:14,195 [wrapper] ==== wrapper stdout END ====
[2025-11-24 10:45:18] 2025-11-24 09:44:14,199 [wrapper] ==== wrapper stderr END ====
[2025-11-24 10:45:18]  *** Error codes and diagnostics ***
[2025-11-24 10:45:18]     "exeErrorCode": 0,
[2025-11-24 10:45:18]     "exeErrorDiag": "",
[2025-11-24 10:45:18]     "pilotErrorCode": 0,
[2025-11-24 10:45:18]     "pilotErrorDiag": "",
[2025-11-24 10:45:18]  *** Listing of results directory ***
[2025-11-24 10:45:18] total 1319056
[2025-11-24 10:45:18] -rw-r--r-- 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-24 10:45:18] -rwx------ 1 boinc boinc     36292 Nov 18 16:29 runpilot2-wrapper.sh
[2025-11-24 10:45:18] -rw-r--r-- 1 boinc boinc      5112 Nov 18 16:29 queuedata.json
[2025-11-24 10:45:18] -rw-r--r-- 1 boinc boinc       100 Nov 23 17:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 10:45:18] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 17:41 run_atlas
[2025-11-24 10:45:18] -rw-r--r-- 1 boinc boinc       105 Nov 23 17:41 job.xml
[2025-11-24 10:45:18] -rw-r--r-- 2 boinc boinc 409155751 Nov 23 17:41 EVNT.47493065._000109.pool.root.1
[2025-11-24 10:45:18] -rw-r--r-- 1 boinc boinc      6687 Nov 23 17:41 init_data.xml
[2025-11-24 10:45:18] -rw-r--r-- 2 boinc boinc     15120 Nov 23 17:41 start_atlas.sh
[2025-11-24 10:45:18] drwxrwx--x 2 boinc boinc      4096 Nov 23 17:41 shared
[2025-11-24 10:45:18] -rw-r--r-- 2 boinc boinc    590095 Nov 23 17:41 input.tar.gz
[2025-11-24 10:45:18] -rw-r--r-- 1 boinc boinc         0 Nov 23 17:41 boinc_lockfile
[2025-11-24 10:45:18] -rw-r--r-- 1 boinc boinc      2773 Nov 23 17:41 pandaJob.out
[2025-11-24 10:45:18] -rw------- 1 boinc boinc    989785 Nov 23 17:41 agis_schedconf.cvmfs.json
[2025-11-24 10:45:18] drwx------ 5 boinc boinc      4096 Nov 23 17:41 pilot3
[2025-11-24 10:45:18] -rw-r--r-- 1 boinc boinc       531 Nov 24 10:36 boinc_task_state.xml
[2025-11-24 10:45:18] -rw------- 1 boinc boinc 917420774 Nov 24 10:42 HITS.47493068._001086.pool.root.1
[2025-11-24 10:45:18] -rw------- 1 boinc boinc        95 Nov 24 10:42 pilot_heartbeat.json
[2025-11-24 10:45:18] -rw------- 1 boinc boinc      1039 Nov 24 10:42 memory_monitor_summary.json
[2025-11-24 10:45:18] -rw------- 1 boinc boinc   1526164 Nov 24 10:43 agis_ddmendpoints.agis.ALL.json
[2025-11-24 10:45:18] -rw------- 1 boinc boinc   1731566 Nov 24 10:43 log.47493068._001086.job.log.tgz.1
[2025-11-24 10:45:18] -rw------- 1 boinc boinc      8592 Nov 24 10:43 heartbeat.json
[2025-11-24 10:45:18] -rw------- 1 boinc boinc      4909 Nov 24 10:44 pilotlog.txt
[2025-11-24 10:45:18] -rw------- 1 boinc boinc   8373035 Nov 24 10:44 log.47493068._001086.job.log.1
[2025-11-24 10:45:18] -rw------- 1 boinc boinc       353 Nov 24 10:44 output.list
[2025-11-24 10:45:18] -rw-r--r-- 1 boinc boinc       620 Nov 24 10:44 runtime_log
[2025-11-24 10:45:18] -rw------- 1 boinc boinc  10127360 Nov 24 10:44 result.tar.gz
[2025-11-24 10:45:18] -rw------- 1 boinc boinc       671 Nov 24 10:44 sf7MDmPpcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTRFKDmeDzDQn.diag
[2025-11-24 10:45:18] -rw-r--r-- 1 boinc boinc      9085 Nov 24 10:44 runtime_log.err
[2025-11-24 10:45:18] -rw-r--r-- 1 boinc boinc        28 Nov 24 10:44 wrapper_checkpoint.txt
[2025-11-24 10:45:18] -rw-r--r-- 1 boinc boinc      8192 Nov 24 10:45 boinc_mmap_file
[2025-11-24 10:45:18] -rw-r--r-- 1 boinc boinc     21128 Nov 24 10:45 stderr.txt
[2025-11-24 10:45:18] HITS file was successfully produced:
[2025-11-24 10:45:18] -rw------- 1 boinc boinc 917420774 Nov 24 10:42 shared/HITS.pool.root.1
[2025-11-24 10:45:18]  *** Contents of shared directory: ***
[2025-11-24 10:45:18] total 1305984
[2025-11-24 10:45:18] -rw-r--r-- 2 boinc boinc 409155751 Nov 23 17:41 ATLAS.root_0
[2025-11-24 10:45:18] -rw-r--r-- 2 boinc boinc     15120 Nov 23 17:41 start_atlas.sh
[2025-11-24 10:45:18] -rw-r--r-- 2 boinc boinc    590095 Nov 23 17:41 input.tar.gz
[2025-11-24 10:45:18] -rw------- 1 boinc boinc 917420774 Nov 24 10:42 HITS.pool.root.1
[2025-11-24 10:45:18] -rw------- 1 boinc boinc  10127360 Nov 24 10:44 result.tar.gz
10:45:19 (3027774): run_atlas exited; CPU time 246294.977081
10:45:19 (3027774): called boinc_finish(0)

</stderr_txt>
]]>

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