Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:54:27 (11826): wrapper (7.7.26015): starting
23:54:27 (11826): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 23:54:27] Arguments: --nthreads 8
[2025-11-21 23:54:27] Threads: 8
[2025-11-21 23:54:27] Checking for CVMFS
[2025-11-21 23:54:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 23:54:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 23:54:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 23:54:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 23:54:30] 2.11.2.0 20802 78964 125772 153148 0 223 16426269 25165824 4072 130560 7 24077660 99.860 14272093 2070 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-21 23:54:30] CVMFS is ok
[2025-11-21 23:54:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 23:54:30] Checking for apptainer binary...
[2025-11-21 23:54:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 23:54:30] Running /usr/bin/apptainer --version
[2025-11-21 23:54:30] apptainer version 1.3.2-1.el7
[2025-11-21 23:54:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 23:54:32] cg-vwn369.simple-grid.lan
[2025-11-21 23:54:32] apptainer works
[2025-11-21 23:54:32] Set ATHENA_PROC_NUMBER=8
[2025-11-21 23:54:32] Set ATHENA_CORE_NUMBER=8
[2025-11-21 23:54:32] Starting ATLAS job with PandaID=6891595478
[2025-11-21 23:54:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 01:27:38]  *** The last 200 lines of the pilot log: ***
[2025-11-23 01:27:38] 2025-11-23 00:26:50,242 | INFO     | time since job start (91755s) is within the limit (172800.0s)
[2025-11-23 01:27:38] 2025-11-23 00:26:51,478 | INFO     | PID=15656 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 01:27:38] 2025-11-23 00:26:51,478 | INFO     | .. there are 9 such processes running
[2025-11-23 01:27:38] 2025-11-23 00:26:51,561 | INFO     | monitor loop #6158: job 0:6891595478 is in state 'finished'
[2025-11-23 01:27:38] 2025-11-23 00:26:51,561 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 01:27:38] 2025-11-23 00:26:52,481 | INFO     | time since job start (91757s) is within the limit (172800.0s)
[2025-11-23 01:27:38] 2025-11-23 00:26:54,066 | INFO     | monitor loop #6159: job 0:6891595478 is in state 'finished'
[2025-11-23 01:27:38] 2025-11-23 00:26:54,066 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 01:27:38] 2025-11-23 00:26:54,488 | INFO     | time since job start (91759s) is within the limit (172800.0s)
[2025-11-23 01:27:38] 2025-11-23 00:26:56,494 | INFO     | time since job start (91761s) is within the limit (172800.0s)
[2025-11-23 01:27:38] 2025-11-23 00:26:56,571 | INFO     | monitor loop #6160: job 0:6891595478 is in state 'finished'
[2025-11-23 01:27:38] 2025-11-23 00:26:56,571 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 01:27:38] 2025-11-23 00:26:58,501 | INFO     | time since job start (91763s) is within the limit (172800.0s)
[2025-11-23 01:27:38] 2025-11-23 00:26:59,076 | INFO     | monitor loop #6161: job 0:6891595478 is in state 'finished'
[2025-11-23 01:27:38] 2025-11-23 00:26:59,076 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 01:27:38] 2025-11-23 00:26:59,587 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 01:27:38] 2025-11-23 00:26:59,588 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-23 01:27:38] 2025-11-23 00:26:59,590 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6891595478/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 01:27:38] 2025-11-23 00:26:59,591 | INFO     | extracted standard info from prmon json
[2025-11-23 01:27:38] 2025-11-23 00:26:59,591 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 01:27:38] 2025-11-23 00:26:59,591 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 01:27:38] 2025-11-23 00:26:59,634 | INFO     | fitting pss+swap vs Time
[2025-11-23 01:27:38] 2025-11-23 00:26:59,636 | INFO     | sum of square deviations: 1038177309020.5326
[2025-11-23 01:27:38] 2025-11-23 00:26:59,748 | INFO     | sum of deviations: 2490333520647.236
[2025-11-23 01:27:38] 2025-11-23 00:26:59,749 | INFO     | mean x: 1763811854.775401
[2025-11-23 01:27:38] 2025-11-23 00:26:59,749 | INFO     | mean y: 2847283.8161764704
[2025-11-23 01:27:38] 2025-11-23 00:26:59,749 | INFO     | intersect: -4228106087.921679
[2025-11-23 01:27:38] 2025-11-23 00:26:59,751 | INFO     | chi2: 20.234375513831484
[2025-11-23 01:27:38] 2025-11-23 00:26:59,754 | INFO     | sum of square deviations: 1027803073172.3734
[2025-11-23 01:27:38] 2025-11-23 00:26:59,846 | INFO     | sum of deviations: 2955413579889.4365
[2025-11-23 01:27:38] 2025-11-23 00:26:59,846 | INFO     | mean x: 1763811702.279678
[2025-11-23 01:27:38] 2025-11-23 00:26:59,847 | INFO     | mean y: 2854120.747149564
[2025-11-23 01:27:38] 2025-11-23 00:26:59,847 | INFO     | intersect: -5068927812.338221
[2025-11-23 01:27:38] 2025-11-23 00:26:59,849 | INFO     | chi2: 17.33372618955773
[2025-11-23 01:27:38] 2025-11-23 00:26:59,849 | INFO     | current chi2=17.33372618955773 (change=14.335254983732884 %)
[2025-11-23 01:27:38] 2025-11-23 00:26:59,849 | INFO     | right removable region: 1490
[2025-11-23 01:27:38] 2025-11-23 00:26:59,851 | INFO     | sum of square deviations: 1027801909292.3739
[2025-11-23 01:27:38] 2025-11-23 00:26:59,918 | INFO     | sum of deviations: 1940405341935.788
[2025-11-23 01:27:38] 2025-11-23 00:26:59,918 | INFO     | mean x: 1763812007.279678
[2025-11-23 01:27:38] 2025-11-23 00:26:59,918 | INFO     | mean y: 2855365.6431924882
[2025-11-23 01:27:38] 2025-11-23 00:26:59,919 | INFO     | intersect: -3327076414.1608744
[2025-11-23 01:27:38] 2025-11-23 00:26:59,920 | INFO     | chi2: 16.744150271135037
[2025-11-23 01:27:38] 2025-11-23 00:26:59,921 | INFO     | current chi2=16.744150271135037 (change=17.24898917839424 %)
[2025-11-23 01:27:38] 2025-11-23 00:26:59,921 | INFO     | left removable region: 10
[2025-11-23 01:27:38] 2025-11-23 00:26:59,923 | INFO     | sum of square deviations: 1005221573316.5302
[2025-11-23 01:27:38] 2025-11-23 00:26:59,984 | INFO     | sum of deviations: 2311000223792.3853
[2025-11-23 01:27:38] 2025-11-23 00:26:59,985 | INFO     | mean x: 1763811976.7864864
[2025-11-23 01:27:38] 2025-11-23 00:26:59,985 | INFO     | mean y: 2867144.849324324
[2025-11-23 01:27:38] 2025-11-23 00:26:59,985 | INFO     | intersect: -4052129267.1683187
[2025-11-23 01:27:38] 2025-11-23 00:26:59,987 | INFO     | chi2: 12.334909096676618
[2025-11-23 01:27:38] 2025-11-23 00:26:59,987 | INFO     | current memory leak: 2.30 B/s (using 1480 data points, chi2=12.33)
[2025-11-23 01:27:38] 2025-11-23 00:26:59,989 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-23 01:27:38] 2025-11-23 00:26:59,990 | INFO     | ..............................
[2025-11-23 01:27:38] 2025-11-23 00:26:59,990 | INFO     | . Timing measurements:
[2025-11-23 01:27:38] 2025-11-23 00:26:59,990 | INFO     | . get job = 0 s
[2025-11-23 01:27:38] 2025-11-23 00:26:59,990 | INFO     | . initial setup = 6 s
[2025-11-23 01:27:38] 2025-11-23 00:26:59,990 | INFO     | . payload setup = 113 s
[2025-11-23 01:27:38] 2025-11-23 00:26:59,990 | INFO     | . stage-in = 0 s
[2025-11-23 01:27:38] 2025-11-23 00:26:59,990 | INFO     | . payload execution = 91393 s
[2025-11-23 01:27:38] 2025-11-23 00:26:59,990 | INFO     | . stage-out = 6 s
[2025-11-23 01:27:38] 2025-11-23 00:26:59,990 | INFO     | . log creation = 2 s
[2025-11-23 01:27:38] 2025-11-23 00:26:59,991 | INFO     | ..............................
[2025-11-23 01:27:38] 2025-11-23 00:27:00,143 | INFO     | 
[2025-11-23 01:27:38] 2025-11-23 00:27:00,143 | INFO     | job summary report
[2025-11-23 01:27:38] 2025-11-23 00:27:00,143 | INFO     | --------------------------------------------------
[2025-11-23 01:27:38] 2025-11-23 00:27:00,144 | INFO     | PanDA job id: 6891595478
[2025-11-23 01:27:38] 2025-11-23 00:27:00,144 | INFO     | task id: 47493068
[2025-11-23 01:27:38] 2025-11-23 00:27:00,144 | INFO     | errors: (none)
[2025-11-23 01:27:38] 2025-11-23 00:27:00,144 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 01:27:38] 2025-11-23 00:27:00,144 | INFO     | pilot state: finished 
[2025-11-23 01:27:38] 2025-11-23 00:27:00,144 | INFO     | transexitcode: 0
[2025-11-23 01:27:38] 2025-11-23 00:27:00,144 | INFO     | exeerrorcode: 0
[2025-11-23 01:27:38] 2025-11-23 00:27:00,144 | INFO     | exeerrordiag: 
[2025-11-23 01:27:38] 2025-11-23 00:27:00,144 | INFO     | exitcode: 0
[2025-11-23 01:27:38] 2025-11-23 00:27:00,144 | INFO     | exitmsg: OK
[2025-11-23 01:27:38] 2025-11-23 00:27:00,144 | INFO     | cpuconsumptiontime: 335859 s
[2025-11-23 01:27:38] 2025-11-23 00:27:00,144 | INFO     | nevents: 1000
[2025-11-23 01:27:38] 2025-11-23 00:27:00,145 | INFO     | neventsw: 0
[2025-11-23 01:27:38] 2025-11-23 00:27:00,145 | INFO     | pid: 22761
[2025-11-23 01:27:38] 2025-11-23 00:27:00,145 | INFO     | pgrp: 22761
[2025-11-23 01:27:38] 2025-11-23 00:27:00,145 | INFO     | corecount: 8
[2025-11-23 01:27:38] 2025-11-23 00:27:00,145 | INFO     | event service: False
[2025-11-23 01:27:38] 2025-11-23 00:27:00,145 | INFO     | sizes: {0: 2298619, 1: 2298818, 12: 2298818, 23: 2298846, 34: 2298874, 44: 2298902, 55: 2299058, 66: 2299086, 72: 2299376, 77: 2299404, 91511: 2362119, 91512: 2362
[2025-11-23 01:27:38] 2025-11-23 00:27:00,145 | INFO     | --------------------------------------------------
[2025-11-23 01:27:38] 2025-11-23 00:27:00,145 | INFO     | 
[2025-11-23 01:27:38] 2025-11-23 00:27:00,145 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-23 01:27:38] 2025-11-23 00:27:00,511 | INFO     | time since job start (91765s) is within the limit (172800.0s)
[2025-11-23 01:27:38] 2025-11-23 00:27:00,802 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 01:27:38] 2025-11-23 00:27:00,803 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 01:27:38] 2025-11-23 00:27:00,803 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 01:27:38] 2025-11-23 00:27:00,803 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 01:27:38] 2025-11-23 00:27:00,803 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 01:27:38] 2025-11-23 00:27:00,803 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 01:27:38] 2025-11-23 00:27:00,803 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 01:27:38] 2025-11-23 00:27:00,803 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 01:27:38] 2025-11-23 00:27:00,803 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 01:27:38] 2025-11-23 00:27:00,803 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 01:27:38] 2025-11-23 00:27:00,804 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 01:27:38] 2025-11-23 00:27:00,804 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 01:27:38] 2025-11-23 00:27:00,804 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 01:27:38] 2025-11-23 00:27:00,804 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 01:27:38] 2025-11-23 00:27:00,804 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 01:27:38] 2025-11-23 00:27:00,804 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 01:27:38] 2025-11-23 00:27:00,804 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 01:27:38] 2025-11-23 00:27:00,804 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 01:27:38] 2025-11-23 00:27:00,804 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 01:27:38] 2025-11-23 00:27:00,804 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 01:27:38] 2025-11-23 00:27:00,805 | INFO     | job 6891595478 has completed (purged errors)
[2025-11-23 01:27:38] 2025-11-23 00:27:00,805 | INFO     | overall cleanup function is called
[2025-11-23 01:27:38] 2025-11-23 00:27:01,831 | INFO     | --- collectZombieJob: --- 10, [22761]
[2025-11-23 01:27:38] 2025-11-23 00:27:01,832 | INFO     | zombie collector waiting for pid 22761
[2025-11-23 01:27:38] 2025-11-23 00:27:01,832 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 01:27:38] 2025-11-23 00:27:01,832 | INFO     | collected zombie processes
[2025-11-23 01:27:38] 2025-11-23 00:27:01,832 | INFO     | will attempt to kill all subprocesses of pid=22761
[2025-11-23 01:27:38] 2025-11-23 00:27:01,952 | INFO     | process IDs to be killed: [22761] (in reverse order)
[2025-11-23 01:27:38] 2025-11-23 00:27:03,014 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 01:27:38] 2025-11-23 00:27:03,015 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 01:27:38] 2025-11-23 00:27:03,018 | INFO     | did not find any defunct processes belonging to 22761
[2025-11-23 01:27:38] 2025-11-23 00:27:03,022 | INFO     | did not find any defunct processes belonging to 22761
[2025-11-23 01:27:38] 2025-11-23 00:27:03,065 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 01:27:38] 2025-11-23 00:27:03,065 | INFO     | ready for new job
[2025-11-23 01:27:38] 2025-11-23 00:27:03,066 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 01:27:38] 2025-11-23 00:27:03,073 | INFO     | ***************************************
[2025-11-23 01:27:38] 2025-11-23 00:27:03,073 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 01:27:38] 2025-11-23 00:27:03,073 | INFO     | ***************************************
[2025-11-23 01:27:38] 2025-11-23 00:27:03,073 | INFO     | 
[2025-11-23 01:27:38] 2025-11-23 00:27:03,074 | INFO     | pilot is running in a VM
[2025-11-23 01:27:38] 2025-11-23 00:27:03,074 | INFO     | architecture information:
[2025-11-23 01:27:38] 2025-11-23 00:27:03,080 | INFO     | executing command: cat /etc/os-release
[2025-11-23 01:27:38] 2025-11-23 00:27:03,432 | INFO     | cat /etc/os-release:
[2025-11-23 01:27:38] NAME="CentOS Linux"
[2025-11-23 01:27:38] VERSION="7 (Core)"
[2025-11-23 01:27:38] ID="centos"
[2025-11-23 01:27:38] ID_LIKE="rhel fedora"
[2025-11-23 01:27:38] VERSION_ID="7"
[2025-11-23 01:27:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 01:27:38] ANSI_COLOR="0;31"
[2025-11-23 01:27:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 01:27:38] HOME_URL="https://www.centos.org/"
[2025-11-23 01:27:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 01:27:38] 
[2025-11-23 01:27:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 01:27:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 01:27:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 01:27:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 01:27:38] 
[2025-11-23 01:27:38] 2025-11-23 00:27:03,433 | INFO     | ***************************************
[2025-11-23 01:27:38] 2025-11-23 00:27:03,936 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-23 01:27:38] 2025-11-23 00:27:04,171 | INFO     | sufficient remaining disk space (494913191936 B)
[2025-11-23 01:27:38] 2025-11-23 00:27:04,171 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 01:27:38] 2025-11-23 00:27:04,171 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 01:27:38] 2025-11-23 00:27:04,171 | INFO     | update_server=False
[2025-11-23 01:27:38] 2025-11-23 00:27:04,172 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 01:27:38] 2025-11-23 00:27:04,173 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 01:27:38] 2025-11-23 00:27:04,609 | INFO     | all payload control threads have been joined
[2025-11-23 01:27:38] 2025-11-23 00:27:05,115 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 01:27:38] 2025-11-23 00:27:05,115 | INFO     | aborting loop
[2025-11-23 01:27:38] 2025-11-23 00:27:05,159 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 01:27:38] 2025-11-23 00:27:05,172 | INFO     | all job control threads have been joined
[2025-11-23 01:27:38] 2025-11-23 00:27:05,178 | INFO     | [job] retrieve thread has finished
[2025-11-23 01:27:38] 2025-11-23 00:27:05,262 | INFO     | [data] copytool_in thread has finished
[2025-11-23 01:27:38] 2025-11-23 00:27:05,278 | INFO     | all data control threads have been joined
[2025-11-23 01:27:38] 2025-11-23 00:27:05,463 | INFO     | [payload] validate_post thread has finished
[2025-11-23 01:27:38] 2025-11-23 00:27:05,615 | INFO     | [payload] control thread has finished
[2025-11-23 01:27:38] 2025-11-23 00:27:05,678 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 01:27:38] 2025-11-23 00:27:05,843 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 01:27:38] 2025-11-23 00:27:05,971 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 01:27:38] 2025-11-23 00:27:06,121 | INFO     | [job] job monitor thread has finished
[2025-11-23 01:27:38] 2025-11-23 00:27:06,165 | INFO     | [job] queue monitor thread has finished
[2025-11-23 01:27:38] 2025-11-23 00:27:06,178 | INFO     | [job] control thread has finished
[2025-11-23 01:27:38] 2025-11-23 00:27:06,179 | INFO     | [data] copytool_out thread has finished
[2025-11-23 01:27:38] 2025-11-23 00:27:06,284 | INFO     | [data] control thread has finished
[2025-11-23 01:27:38] 2025-11-23 00:27:06,314 | INFO     | [job] validate thread has finished
[2025-11-23 01:27:38] 2025-11-23 00:27:06,572 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 01:27:38] 2025-11-23 00:27:06,588 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 01:27:38] 2025-11-23 00:27:06,615 | INFO     | [payload] failed_post thread has finished
[2025-11-23 01:27:38] 2025-11-23 00:27:09,980 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 01:27:38] 2025-11-23 00:27:15,747 | INFO     | [monitor] cgroup control has ended
[2025-11-23 01:27:38] 2025-11-23 00:27:16,410 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140119432361792)>', '<ExcThread(monitor, started 140118971098880)>']
[2025-11-23 01:27:38] 2025-11-23 00:27:21,436 | INFO     | all workflow threads have been joined
[2025-11-23 01:27:38] 2025-11-23 00:27:21,436 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 01:27:38] 2025-11-23 00:27:21,436 | INFO     | traces error code: 0
[2025-11-23 01:27:38] 2025-11-23 00:27:21,437 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 01:27:38] 2025-11-23 00:27:33,695 | INFO     | PID=15656 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 01:27:38] 2025-11-23 00:27:33,695 | INFO     | .. there are 9 such processes running
[2025-11-23 01:27:38] 2025-11-23 00:27:33,697 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 01:27:38] 2025-11-23 00:27:33,697 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 01:27:38] 2025-11-23 00:27:33,697 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 01:27:38] 2025-11-23 00:27:33,697 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 01:27:38] 2025-11-23 00:27:33,697 | INFO     | [monitor] control thread has ended
[2025-11-23 01:27:38] 2025-11-23 00:27:34,152 [wrapper] ==== pilot stdout END ====
[2025-11-23 01:27:38] 2025-11-23 00:27:34,265 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 01:27:38] 2025-11-23 00:27:34,359 [wrapper] pilotpid: 15656
[2025-11-23 01:27:38] 2025-11-23 00:27:34,474 [wrapper] Pilot exit status: 0
[2025-11-23 01:27:38] 2025-11-23 00:27:34,861 [wrapper] pandaids: 6891595478
[2025-11-23 01:27:38] 2025-11-23 00:27:35,447 [wrapper] cleanup supervisor_pilot 18343 15657
[2025-11-23 01:27:38] 2025-11-23 00:27:35,555 [wrapper] Test setup, not cleaning
[2025-11-23 01:27:38] 2025-11-23 00:27:35,649 [wrapper] apfmon messages muted
[2025-11-23 01:27:38] 2025-11-23 00:27:35,756 [wrapper] ==== wrapper stdout END ====
[2025-11-23 01:27:38] 2025-11-23 00:27:35,857 [wrapper] ==== wrapper stderr END ====
[2025-11-23 01:27:38]  *** Error codes and diagnostics ***
[2025-11-23 01:27:38]     "exeErrorCode": 0,
[2025-11-23 01:27:38]     "exeErrorDiag": "",
[2025-11-23 01:27:38]     "pilotErrorCode": 0,
[2025-11-23 01:27:38]     "pilotErrorDiag": "",
[2025-11-23 01:27:38]  *** Listing of results directory ***
[2025-11-23 01:27:38] total 1324468
[2025-11-23 01:27:38] -rw-r--r--. 1 boinc boinc    576529 Nov 18 19:36 pilot3.tar.gz
[2025-11-23 01:27:38] -rwx------. 1 boinc boinc     36292 Nov 18 19:43 runpilot2-wrapper.sh
[2025-11-23 01:27:38] -rw-r--r--. 1 boinc boinc      5112 Nov 18 19:43 queuedata.json
[2025-11-23 01:27:38] -rw-r--r--. 1 boinc boinc       100 Nov 21 23:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 01:27:38] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 23:54 run_atlas
[2025-11-23 01:27:38] -rw-r--r--. 1 boinc boinc       105 Nov 21 23:54 job.xml
[2025-11-23 01:27:38] -rw-r--r--. 1 boinc boinc      6390 Nov 21 23:54 init_data.xml
[2025-11-23 01:27:38] -rw-r--r--. 2 boinc boinc 410149616 Nov 21 23:54 EVNT.47493065._000772.pool.root.1
[2025-11-23 01:27:38] -rw-r--r--. 2 boinc boinc     15120 Nov 21 23:54 start_atlas.sh
[2025-11-23 01:27:38] drwxrwx--x. 2 boinc boinc        68 Nov 21 23:54 shared
[2025-11-23 01:27:38] -rw-r--r--. 2 boinc boinc    590093 Nov 21 23:54 input.tar.gz
[2025-11-23 01:27:38] -rw-r--r--. 1 boinc boinc         0 Nov 21 23:54 boinc_lockfile
[2025-11-23 01:27:38] -rw-r--r--. 1 boinc boinc      2770 Nov 21 23:54 pandaJob.out
[2025-11-23 01:27:38] -rw-------. 1 boinc boinc    989798 Nov 21 23:57 agis_schedconf.cvmfs.json
[2025-11-23 01:27:38] drwx------. 5 boinc boinc      4096 Nov 21 23:57 pilot3
[2025-11-23 01:27:38] -rw-r--r--. 1 boinc boinc       533 Nov 23 00:56 boinc_task_state.xml
[2025-11-23 01:27:38] -rw-------. 1 boinc boinc 912708087 Nov 23 01:24 HITS.47493068._006361.pool.root.1
[2025-11-23 01:27:38] -rw-------. 1 boinc boinc      1031 Nov 23 01:25 memory_monitor_summary.json
[2025-11-23 01:27:38] -rw-------. 1 boinc boinc   1526164 Nov 23 01:25 agis_ddmendpoints.agis.ALL.json
[2025-11-23 01:27:38] -rw-------. 1 boinc boinc   2558690 Nov 23 01:25 log.47493068._006361.job.log.tgz.1
[2025-11-23 01:27:38] -rw-------. 1 boinc boinc      7939 Nov 23 01:26 heartbeat.json
[2025-11-23 01:27:38] -rw-r--r--. 1 boinc boinc      8192 Nov 23 01:27 boinc_mmap_file
[2025-11-23 01:27:38] -rw-r--r--. 1 boinc boinc        29 Nov 23 01:27 wrapper_checkpoint.txt
[2025-11-23 01:27:38] -rw-------. 1 boinc boinc        95 Nov 23 01:27 pilot_heartbeat.json
[2025-11-23 01:27:38] -rw-------. 1 boinc boinc       820 Nov 23 01:27 pilotlog.txt
[2025-11-23 01:27:38] -rw-------. 1 boinc boinc  12190608 Nov 23 01:27 log.47493068._006361.job.log.1
[2025-11-23 01:27:38] -rw-------. 1 boinc boinc       353 Nov 23 01:27 output.list
[2025-11-23 01:27:38] -rw-r--r--. 1 boinc boinc       620 Nov 23 01:27 runtime_log
[2025-11-23 01:27:38] -rw-------. 1 boinc boinc  14766080 Nov 23 01:27 result.tar.gz
[2025-11-23 01:27:38] -rw-r--r--. 1 boinc boinc      8703 Nov 23 01:27 runtime_log.err
[2025-11-23 01:27:38] -rw-------. 1 boinc boinc       662 Nov 23 01:27 nKPMDm6qff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmJJGKDmMxourm.diag
[2025-11-23 01:27:38] -rw-r--r--. 1 boinc boinc     21506 Nov 23 01:27 stderr.txt
[2025-11-23 01:27:38] HITS file was successfully produced:
[2025-11-23 01:27:38] -rw-------. 1 boinc boinc 912708087 Nov 23 01:24 shared/HITS.pool.root.1
[2025-11-23 01:27:38]  *** Contents of shared directory: ***
[2025-11-23 01:27:38] total 1306876
[2025-11-23 01:27:38] -rw-r--r--. 2 boinc boinc 410149616 Nov 21 23:54 ATLAS.root_0
[2025-11-23 01:27:38] -rw-r--r--. 2 boinc boinc     15120 Nov 21 23:54 start_atlas.sh
[2025-11-23 01:27:38] -rw-r--r--. 2 boinc boinc    590093 Nov 21 23:54 input.tar.gz
[2025-11-23 01:27:38] -rw-------. 1 boinc boinc 912708087 Nov 23 01:24 HITS.pool.root.1
[2025-11-23 01:27:38] -rw-------. 1 boinc boinc  14766080 Nov 23 01:27 result.tar.gz
01:27:39 (11826): run_atlas exited; CPU time 336411.386396
01:27:39 (11826): called boinc_finish(0)

</stderr_txt>
]]>

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