Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:45:30 (654540): wrapper (7.7.26015): starting
10:45:30 (654540): wrapper: running run_atlas (--nthreads 4)
[2025-11-24 10:45:30] Arguments: --nthreads 4
[2025-11-24 10:45:30] Threads: 4
[2025-11-24 10:45:30] Checking for CVMFS
[2025-11-24 10:45:30] No cvmfs_config command found, will try listing directly
[2025-11-24 10:45:30] CVMFS is ok
[2025-11-24 10:45:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 10:45:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 10:45:30] Further information can be found at the LHC@home message board.
[2025-11-24 10:45:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 10:45:30] Checking for apptainer binary...
[2025-11-24 10:45:30] which: no apptainer in ((null))
[2025-11-24 10:45:30] apptainer is not installed, using version from CVMFS
[2025-11-24 10:45:30] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 10:45:30] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot112/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2025-11-24 10:45:30] apptainer works
[2025-11-24 10:45:30] Set ATHENA_PROC_NUMBER=4
[2025-11-24 10:45:30] Set ATHENA_CORE_NUMBER=4
[2025-11-24 10:45:30] Starting ATLAS job with PandaID=6891594851
[2025-11-24 10:45:30] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot112/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 02:49:06]  *** The last 200 lines of the pilot log: ***
[2025-11-25 02:49:06] 2025-11-25 01:47:35,604 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:49:06] 2025-11-25 01:47:36,776 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 02:49:06] 2025-11-25 01:47:36,795 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2710.4538593750003
[2025-11-25 02:49:06] 2025-11-25 01:47:36,818 | INFO     | using path: /scratch/boinc/var/slot112/slots/0/PanDA_Pilot-6891594851/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 02:49:06] 2025-11-25 01:47:36,819 | INFO     | extracted standard info from prmon json
[2025-11-25 02:49:06] 2025-11-25 01:47:36,819 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 02:49:06] 2025-11-25 01:47:36,819 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 02:49:06] 2025-11-25 01:47:36,833 | INFO     | fitting pss+swap vs Time
[2025-11-25 02:49:06] 2025-11-25 01:47:36,835 | INFO     | sum of square deviations: 262513322032.5
[2025-11-25 02:49:06] 2025-11-25 01:47:36,861 | INFO     | sum of deviations: 818581254081.0
[2025-11-25 02:49:06] 2025-11-25 01:47:36,861 | INFO     | mean x: 1764006405.5
[2025-11-25 02:49:06] 2025-11-25 01:47:36,861 | INFO     | mean y: 2277760.3742071884
[2025-11-25 02:49:06] 2025-11-25 01:47:36,861 | INFO     | intersect: -5498329082.894255
[2025-11-25 02:49:06] 2025-11-25 01:47:36,862 | INFO     | chi2: 4.159530639683356
[2025-11-25 02:49:06] 2025-11-25 01:47:36,863 | INFO     | sum of square deviations: 258372807190.0
[2025-11-25 02:49:06] 2025-11-25 01:47:36,888 | INFO     | sum of deviations: 1014141816785.0001
[2025-11-25 02:49:06] 2025-11-25 01:47:36,889 | INFO     | mean x: 1764006253.0
[2025-11-25 02:49:06] 2025-11-25 01:47:36,889 | INFO     | mean y: 2284956.2486716257
[2025-11-25 02:49:06] 2025-11-25 01:47:36,889 | INFO     | intersect: -6921634498.332227
[2025-11-25 02:49:06] 2025-11-25 01:47:36,890 | INFO     | chi2: 2.0517219319900732
[2025-11-25 02:49:06] 2025-11-25 01:47:36,890 | INFO     | current chi2=2.0517219319900732 (change=50.67419596778687 %)
[2025-11-25 02:49:06] 2025-11-25 01:47:36,891 | INFO     | sum of square deviations: 254276060610.0
[2025-11-25 02:49:06] 2025-11-25 01:47:36,915 | INFO     | sum of deviations: 1025955480086.4994
[2025-11-25 02:49:06] 2025-11-25 01:47:36,915 | INFO     | mean x: 1764006100.5
[2025-11-25 02:49:06] 2025-11-25 01:47:36,916 | INFO     | mean y: 2285393.2275641025
[2025-11-25 02:49:06] 2025-11-25 01:47:36,916 | INFO     | intersect: -7115143283.983966
[2025-11-25 02:49:06] 2025-11-25 01:47:36,917 | INFO     | chi2: 1.9919216608596335
[2025-11-25 02:49:06] 2025-11-25 01:47:36,917 | INFO     | current chi2=1.9919216608596335 (change=2.9146381972159503 %)
[2025-11-25 02:49:06] 2025-11-25 01:47:36,917 | INFO     | right removable region: 935
[2025-11-25 02:49:06] 2025-11-25 01:47:36,918 | INFO     | sum of square deviations: 258372807190.0
[2025-11-25 02:49:06] 2025-11-25 01:47:36,943 | INFO     | sum of deviations: 644038001891.0002
[2025-11-25 02:49:06] 2025-11-25 01:47:36,943 | INFO     | mean x: 1764006558.0
[2025-11-25 02:49:06] 2025-11-25 01:47:36,943 | INFO     | mean y: 2284177.1392136025
[2025-11-25 02:49:06] 2025-11-25 01:47:36,943 | INFO     | intersect: -4394801070.696077
[2025-11-25 02:49:06] 2025-11-25 01:47:36,944 | INFO     | chi2: 2.2536053013628496
[2025-11-25 02:49:06] 2025-11-25 01:47:36,944 | INFO     | current chi2=2.2536053013628496 (change=45.82068275053252 %)
[2025-11-25 02:49:06] 2025-11-25 01:47:36,945 | INFO     | sum of square deviations: 254276060610.0
[2025-11-25 02:49:06] 2025-11-25 01:47:36,965 | INFO     | sum of deviations: 631059255669.4995
[2025-11-25 02:49:06] 2025-11-25 01:47:36,966 | INFO     | mean x: 1764006710.5
[2025-11-25 02:49:06] 2025-11-25 01:47:36,966 | INFO     | mean y: 2284659.721153846
[2025-11-25 02:49:06] 2025-11-25 01:47:36,966 | INFO     | intersect: -4375605885.907165
[2025-11-25 02:49:06] 2025-11-25 01:47:36,967 | INFO     | chi2: 2.2523269390231073
[2025-11-25 02:49:06] 2025-11-25 01:47:36,967 | INFO     | current chi2=2.2523269390231073 (change=0.05672520999880695 %)
[2025-11-25 02:49:06] 2025-11-25 01:47:36,967 | INFO     | left removable region: 20
[2025-11-25 02:49:06] 2025-11-25 01:47:36,968 | INFO     | sum of square deviations: 237542425930.0
[2025-11-25 02:49:06] 2025-11-25 01:47:36,986 | INFO     | sum of deviations: 806494313433.0
[2025-11-25 02:49:06] 2025-11-25 01:47:36,986 | INFO     | mean x: 1764006680.0
[2025-11-25 02:49:06] 2025-11-25 01:47:36,986 | INFO     | mean y: 2293434.0032786885
[2025-11-25 02:49:06] 2025-11-25 01:47:36,986 | INFO     | intersect: -5986789782.2179
[2025-11-25 02:49:06] 2025-11-25 01:47:36,987 | INFO     | chi2: 0.07089355741948059
[2025-11-25 02:49:06] 2025-11-25 01:47:36,987 | INFO     | current memory leak: 3.40 B/s (using 915 data points, chi2=0.07)
[2025-11-25 02:49:06] 2025-11-25 01:47:36,988 | INFO     | could have reported an average CPU frequency of 2690 MHz (35 samples)
[2025-11-25 02:49:06] 2025-11-25 01:47:36,988 | INFO     | ..............................
[2025-11-25 02:49:06] 2025-11-25 01:47:36,988 | INFO     | . Timing measurements:
[2025-11-25 02:49:06] 2025-11-25 01:47:36,988 | INFO     | . get job = 0 s
[2025-11-25 02:49:06] 2025-11-25 01:47:36,988 | INFO     | . initial setup = 1 s
[2025-11-25 02:49:06] 2025-11-25 01:47:36,988 | INFO     | . payload setup = 10 s
[2025-11-25 02:49:06] 2025-11-25 01:47:36,989 | INFO     | . stage-in = 0 s
[2025-11-25 02:49:06] 2025-11-25 01:47:36,989 | INFO     | . payload execution = 57663 s
[2025-11-25 02:49:06] 2025-11-25 01:47:36,989 | INFO     | . stage-out = 2 s
[2025-11-25 02:49:06] 2025-11-25 01:47:36,989 | INFO     | . log creation = 0 s
[2025-11-25 02:49:06] 2025-11-25 01:47:36,989 | INFO     | ..............................
[2025-11-25 02:49:06] 2025-11-25 01:47:37,001 | INFO     | time since job start (57711s) is within the limit (172800.0s)
[2025-11-25 02:49:06] 2025-11-25 01:47:37,076 | INFO     | 
[2025-11-25 02:49:06] 2025-11-25 01:47:37,076 | INFO     | job summary report
[2025-11-25 02:49:06] 2025-11-25 01:47:37,077 | INFO     | --------------------------------------------------
[2025-11-25 02:49:06] 2025-11-25 01:47:37,077 | INFO     | PanDA job id: 6891594851
[2025-11-25 02:49:06] 2025-11-25 01:47:37,077 | INFO     | task id: 47493068
[2025-11-25 02:49:06] 2025-11-25 01:47:37,077 | INFO     | errors: (none)
[2025-11-25 02:49:06] 2025-11-25 01:47:37,077 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 02:49:06] 2025-11-25 01:47:37,077 | INFO     | pilot state: finished 
[2025-11-25 02:49:06] 2025-11-25 01:47:37,077 | INFO     | transexitcode: 0
[2025-11-25 02:49:06] 2025-11-25 01:47:37,077 | INFO     | exeerrorcode: 0
[2025-11-25 02:49:06] 2025-11-25 01:47:37,077 | INFO     | exeerrordiag: 
[2025-11-25 02:49:06] 2025-11-25 01:47:37,077 | INFO     | exitcode: 0
[2025-11-25 02:49:06] 2025-11-25 01:47:37,077 | INFO     | exitmsg: OK
[2025-11-25 02:49:06] 2025-11-25 01:47:37,078 | INFO     | cpuconsumptiontime: 231799 s
[2025-11-25 02:49:06] 2025-11-25 01:47:37,078 | INFO     | nevents: 1000
[2025-11-25 02:49:06] 2025-11-25 01:47:37,078 | INFO     | neventsw: 0
[2025-11-25 02:49:06] 2025-11-25 01:47:37,078 | INFO     | pid: 666049
[2025-11-25 02:49:06] 2025-11-25 01:47:37,078 | INFO     | pgrp: 666049
[2025-11-25 02:49:06] 2025-11-25 01:47:37,078 | INFO     | corecount: 4
[2025-11-25 02:49:06] 2025-11-25 01:47:37,078 | INFO     | event service: False
[2025-11-25 02:49:06] 2025-11-25 01:47:37,078 | INFO     | sizes: {0: 2298808, 1: 2298808, 8: 2299098, 11: 2299126, 57677: 2353459, 57678: 2353458, 57681: 2363451, 57684: 2363507, 57691: 2363753}
[2025-11-25 02:49:06] 2025-11-25 01:47:37,078 | INFO     | --------------------------------------------------
[2025-11-25 02:49:06] 2025-11-25 01:47:37,078 | INFO     | 
[2025-11-25 02:49:06] 2025-11-25 01:47:37,078 | INFO     | executing command: ls -lF /scratch/boinc/var/slot112/slots/0
[2025-11-25 02:49:06] 2025-11-25 01:47:37,109 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 02:49:06] 2025-11-25 01:47:37,109 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 02:49:06] 2025-11-25 01:47:37,109 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 02:49:06] 2025-11-25 01:47:37,109 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 02:49:06] 2025-11-25 01:47:37,110 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 02:49:06] 2025-11-25 01:47:37,110 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 02:49:06] 2025-11-25 01:47:37,110 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 02:49:06] 2025-11-25 01:47:37,110 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 02:49:06] 2025-11-25 01:47:37,110 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 02:49:06] 2025-11-25 01:47:37,110 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 02:49:06] 2025-11-25 01:47:37,110 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 02:49:06] 2025-11-25 01:47:37,110 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 02:49:06] 2025-11-25 01:47:37,110 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 02:49:06] 2025-11-25 01:47:37,110 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 02:49:06] 2025-11-25 01:47:37,111 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 02:49:06] 2025-11-25 01:47:37,111 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 02:49:06] 2025-11-25 01:47:37,111 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 02:49:06] 2025-11-25 01:47:37,111 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 02:49:06] 2025-11-25 01:47:37,111 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 02:49:06] 2025-11-25 01:47:37,111 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 02:49:06] 2025-11-25 01:47:37,111 | INFO     | job 6891594851 has completed (purged errors)
[2025-11-25 02:49:06] 2025-11-25 01:47:37,114 | INFO     | overall cleanup function is called
[2025-11-25 02:49:06] 2025-11-25 01:47:38,131 | INFO     | --- collectZombieJob: --- 10, [666049]
[2025-11-25 02:49:06] 2025-11-25 01:47:38,131 | INFO     | zombie collector waiting for pid 666049
[2025-11-25 02:49:06] 2025-11-25 01:47:38,131 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 02:49:06] 2025-11-25 01:47:38,131 | INFO     | collected zombie processes
[2025-11-25 02:49:06] 2025-11-25 01:47:38,132 | INFO     | will attempt to kill all subprocesses of pid=666049
[2025-11-25 02:49:06] 2025-11-25 01:47:38,938 | INFO     | process IDs to be killed: [666049] (in reverse order)
[2025-11-25 02:49:06] 2025-11-25 01:47:39,181 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 02:49:06] 2025-11-25 01:47:39,181 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 02:49:06] 2025-11-25 01:47:39,213 | INFO     | did not find any defunct processes belonging to 666049
[2025-11-25 02:49:06] 2025-11-25 01:47:39,244 | INFO     | did not find any defunct processes belonging to 666049
[2025-11-25 02:49:06] 2025-11-25 01:47:39,245 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 02:49:06] 2025-11-25 01:47:39,246 | INFO     | ready for new job
[2025-11-25 02:49:06] 2025-11-25 01:47:39,246 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 02:49:06] 2025-11-25 01:47:39,252 | INFO     | ***************************************
[2025-11-25 02:49:06] 2025-11-25 01:47:39,252 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 02:49:06] 2025-11-25 01:47:39,252 | INFO     | ***************************************
[2025-11-25 02:49:06] 2025-11-25 01:47:39,252 | INFO     | 
[2025-11-25 02:49:06] 2025-11-25 01:47:39,260 | INFO     | architecture information:
[2025-11-25 02:49:06] 2025-11-25 01:47:39,261 | INFO     | executing command: cat /etc/os-release
[2025-11-25 02:49:06] 2025-11-25 01:47:39,285 | INFO     | cat /etc/os-release:
[2025-11-25 02:49:06] NAME="CentOS Linux"
[2025-11-25 02:49:06] VERSION="7 (Core)"
[2025-11-25 02:49:06] ID="centos"
[2025-11-25 02:49:06] ID_LIKE="rhel fedora"
[2025-11-25 02:49:06] VERSION_ID="7"
[2025-11-25 02:49:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 02:49:06] ANSI_COLOR="0;31"
[2025-11-25 02:49:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 02:49:06] HOME_URL="https://www.centos.org/"
[2025-11-25 02:49:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 02:49:06] 
[2025-11-25 02:49:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 02:49:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 02:49:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 02:49:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 02:49:06] 
[2025-11-25 02:49:06] 2025-11-25 01:47:39,285 | INFO     | ***************************************
[2025-11-25 02:49:06] 2025-11-25 01:47:39,788 | INFO     | executing command: df -mP /scratch/boinc/var/slot112/slots/0
[2025-11-25 02:49:06] 2025-11-25 01:47:39,811 | INFO     | sufficient remaining disk space (3289943900160 B)
[2025-11-25 02:49:06] 2025-11-25 01:47:39,812 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 02:49:06] 2025-11-25 01:47:39,812 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 02:49:06] 2025-11-25 01:47:39,812 | INFO     | update_server=False
[2025-11-25 02:49:06] 2025-11-25 01:47:39,812 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 02:49:06] 2025-11-25 01:47:39,813 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:49:06] 2025-11-25 01:47:39,813 | INFO     | aborting loop
[2025-11-25 02:49:06] 2025-11-25 01:47:39,839 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 02:49:06] 2025-11-25 01:47:40,712 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 02:49:06] 2025-11-25 01:47:40,754 | INFO     | all data control threads have been joined
[2025-11-25 02:49:06] 2025-11-25 01:47:40,818 | INFO     | [job] retrieve thread has finished
[2025-11-25 02:49:06] 2025-11-25 01:47:40,818 | INFO     | [job] job monitor thread has finished
[2025-11-25 02:49:06] 2025-11-25 01:47:41,133 | INFO     | [job] validate thread has finished
[2025-11-25 02:49:06] 2025-11-25 01:47:41,173 | INFO     | all job control threads have been joined
[2025-11-25 02:49:06] 2025-11-25 01:47:41,275 | INFO     | all payload control threads have been joined
[2025-11-25 02:49:06] 2025-11-25 01:47:41,540 | INFO     | [payload] failed_post thread has finished
[2025-11-25 02:49:06] 2025-11-25 01:47:41,759 | INFO     | [data] control thread has finished
[2025-11-25 02:49:06] 2025-11-25 01:47:41,844 | INFO     | [data] copytool_out thread has finished
[2025-11-25 02:49:06] 2025-11-25 01:47:41,920 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 02:49:06] 2025-11-25 01:47:42,087 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:49:06] 2025-11-25 01:47:42,088 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 02:49:06] 2025-11-25 01:47:42,089 | INFO     | [payload] validate_post thread has finished
[2025-11-25 02:49:06] 2025-11-25 01:47:42,109 | INFO     | [data] copytool_in thread has finished
[2025-11-25 02:49:06] 2025-11-25 01:47:42,178 | INFO     | [job] control thread has finished
[2025-11-25 02:49:06] 2025-11-25 01:47:42,215 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 02:49:06] 2025-11-25 01:47:42,280 | INFO     | [payload] control thread has finished
[2025-11-25 02:49:06] 2025-11-25 01:47:43,092 | INFO     | [job] queue monitor thread has finished
[2025-11-25 02:49:06] 2025-11-25 01:47:44,718 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 02:49:06] 2025-11-25 01:47:50,151 | INFO     | job.realtimelogging is not enabled
[2025-11-25 02:49:06] 2025-11-25 01:47:51,158 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 02:49:06] 2025-11-25 01:48:11,047 | INFO     | PID=658578 has CPU usage=11.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 02:49:06] 2025-11-25 01:48:11,047 | INFO     | .. there are 7 such processes running
[2025-11-25 02:49:06] 2025-11-25 01:48:11,047 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 02:49:06] 2025-11-25 01:48:11,047 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 02:49:06] 2025-11-25 01:48:11,047 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 02:49:06] 2025-11-25 01:48:21,212 | INFO     | [monitor] cgroup control has ended
[2025-11-25 02:49:06] 2025-11-25 01:48:23,053 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23378723891008)>', '<ExcThread(monitor, started 23378482128640)>']
[2025-11-25 02:49:06] 2025-11-25 01:48:23,110 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 02:49:06] 2025-11-25 01:48:23,110 | INFO     | [monitor] control thread has ended
[2025-11-25 02:49:06] 2025-11-25 01:48:28,063 | INFO     | all workflow threads have been joined
[2025-11-25 02:49:06] 2025-11-25 01:48:28,063 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 02:49:06] 2025-11-25 01:48:28,064 | INFO     | traces error code: 0
[2025-11-25 02:49:06] 2025-11-25 01:48:28,064 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 02:49:06] 2025-11-25 01:48:28,215 [wrapper] ==== pilot stdout END ====
[2025-11-25 02:49:06] 2025-11-25 01:48:28,221 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 02:49:06] 2025-11-25 01:48:28,224 [wrapper] pilotpid: 658578
[2025-11-25 02:49:06] 2025-11-25 01:48:28,228 [wrapper] Pilot exit status: 0
[2025-11-25 02:49:06] 2025-11-25 01:48:28,242 [wrapper] pandaids: 6891594851
[2025-11-25 02:49:06] 2025-11-25 01:48:28,425 [wrapper] cleanup supervisor_pilot 2314143 658579
[2025-11-25 02:49:06] 2025-11-25 01:48:28,429 [wrapper] Test setup, not cleaning
[2025-11-25 02:49:06] 2025-11-25 01:48:28,433 [wrapper] apfmon messages muted
[2025-11-25 02:49:06] 2025-11-25 01:48:28,437 [wrapper] ==== wrapper stdout END ====
[2025-11-25 02:49:06] 2025-11-25 01:48:28,441 [wrapper] ==== wrapper stderr END ====
[2025-11-25 02:49:06]  *** Error codes and diagnostics ***
[2025-11-25 02:49:06]     "exeErrorCode": 0,
[2025-11-25 02:49:06]     "exeErrorDiag": "",
[2025-11-25 02:49:06]     "pilotErrorCode": 0,
[2025-11-25 02:49:06]     "pilotErrorDiag": "",
[2025-11-25 02:49:06]  *** Listing of results directory ***
[2025-11-25 02:49:06] total 1300904
[2025-11-25 02:49:06] -rw-r--r-- 1 boinc boinc    576529 Nov 18 19:36 pilot3.tar.gz
[2025-11-25 02:49:06] -rwx------ 1 boinc boinc     36292 Nov 18 19:45 runpilot2-wrapper.sh
[2025-11-25 02:49:06] -rw-r--r-- 1 boinc boinc      5112 Nov 18 19:45 queuedata.json
[2025-11-25 02:49:06] -rw-r--r-- 1 boinc boinc       100 Nov 24 10:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 02:49:06] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 10:45 run_atlas
[2025-11-25 02:49:06] -rw-r--r-- 1 boinc boinc       105 Nov 24 10:45 job.xml
[2025-11-25 02:49:06] -rw-r--r-- 1 boinc boinc      6687 Nov 24 10:45 init_data.xml
[2025-11-25 02:49:06] -rw-r--r-- 2 boinc boinc 408388210 Nov 24 10:45 EVNT.47493065._000768.pool.root.1
[2025-11-25 02:49:06] -rw-r--r-- 2 boinc boinc     15120 Nov 24 10:45 start_atlas.sh
[2025-11-25 02:49:06] drwxrwx--x 2 boinc boinc      4096 Nov 24 10:45 shared
[2025-11-25 02:49:06] -rw-r--r-- 2 boinc boinc    590096 Nov 24 10:45 input.tar.gz
[2025-11-25 02:49:06] -rw-r--r-- 1 boinc boinc         0 Nov 24 10:45 boinc_lockfile
[2025-11-25 02:49:06] -rw-r--r-- 1 boinc boinc      2773 Nov 24 10:45 pandaJob.out
[2025-11-25 02:49:06] -rw------- 1 boinc boinc    989824 Nov 24 10:45 agis_schedconf.cvmfs.json
[2025-11-25 02:49:06] drwx------ 5 boinc boinc      4096 Nov 24 10:45 pilot3
[2025-11-25 02:49:06] -rw-r--r-- 1 boinc boinc       531 Nov 25 02:39 boinc_task_state.xml
[2025-11-25 02:49:06] -rw------- 1 boinc boinc 900612673 Nov 25 02:46 HITS.47493068._006323.pool.root.1
[2025-11-25 02:49:06] -rw------- 1 boinc boinc        95 Nov 25 02:47 pilot_heartbeat.json
[2025-11-25 02:49:06] -rw------- 1 boinc boinc      1042 Nov 25 02:47 memory_monitor_summary.json
[2025-11-25 02:49:06] -rw------- 1 boinc boinc   1516227 Nov 25 02:47 agis_ddmendpoints.agis.ALL.json
[2025-11-25 02:49:06] -rw------- 1 boinc boinc   1690948 Nov 25 02:47 log.47493068._006323.job.log.tgz.1
[2025-11-25 02:49:06] -rw------- 1 boinc boinc      8593 Nov 25 02:47 heartbeat.json
[2025-11-25 02:49:06] -rw------- 1 boinc boinc      4907 Nov 25 02:48 pilotlog.txt
[2025-11-25 02:49:06] -rw------- 1 boinc boinc   7916409 Nov 25 02:48 log.47493068._006323.job.log.1
[2025-11-25 02:49:06] -rw------- 1 boinc boinc       353 Nov 25 02:48 output.list
[2025-11-25 02:49:06] -rw-r--r-- 1 boinc boinc       620 Nov 25 02:48 runtime_log
[2025-11-25 02:49:06] -rw------- 1 boinc boinc   9625600 Nov 25 02:48 result.tar.gz
[2025-11-25 02:49:06] -rw-r--r-- 1 boinc boinc      9085 Nov 25 02:48 runtime_log.err
[2025-11-25 02:49:06] -rw------- 1 boinc boinc       670 Nov 25 02:48 6bKNDm3sff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmrJGKDmu1qA6m.diag
[2025-11-25 02:49:06] -rw-r--r-- 1 boinc boinc        28 Nov 25 02:49 wrapper_checkpoint.txt
[2025-11-25 02:49:06] -rw-r--r-- 1 boinc boinc      8192 Nov 25 02:49 boinc_mmap_file
[2025-11-25 02:49:06] -rw-r--r-- 1 boinc boinc     20480 Nov 25 02:49 stderr.txt
[2025-11-25 02:49:06] HITS file was successfully produced:
[2025-11-25 02:49:06] -rw------- 1 boinc boinc 900612673 Nov 25 02:46 shared/HITS.pool.root.1
[2025-11-25 02:49:06]  *** Contents of shared directory: ***
[2025-11-25 02:49:06] total 1288332
[2025-11-25 02:49:06] -rw-r--r-- 2 boinc boinc 408388210 Nov 24 10:45 ATLAS.root_0
[2025-11-25 02:49:06] -rw-r--r-- 2 boinc boinc     15120 Nov 24 10:45 start_atlas.sh
[2025-11-25 02:49:06] -rw-r--r-- 2 boinc boinc    590096 Nov 24 10:45 input.tar.gz
[2025-11-25 02:49:06] -rw------- 1 boinc boinc 900612673 Nov 25 02:46 HITS.pool.root.1
[2025-11-25 02:49:06] -rw------- 1 boinc boinc   9625600 Nov 25 02:48 result.tar.gz
02:49:07 (654540): run_atlas exited; CPU time 235106.037872
02:49:07 (654540): called boinc_finish(0)

</stderr_txt>
]]>

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