Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:47:59 (15506): wrapper (7.7.26015): starting
17:47:59 (15506): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 17:47:59] Arguments: --nthreads 8
[2025-11-21 17:47:59] Threads: 8
[2025-11-21 17:47:59] Checking for CVMFS
[2025-11-21 17:48:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 17:48:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 17:48:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 17:48:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 17:48:02] 2.11.2.0 28532 278363 139232 153128 3 85 15300422 25165825 4632 130560 9 124015145 99.874 74086957 3129 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-21 17:48:02] CVMFS is ok
[2025-11-21 17:48:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 17:48:02] Checking for apptainer binary...
[2025-11-21 17:48:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 17:48:02] Running /usr/bin/apptainer --version
[2025-11-21 17:48:02] apptainer version 1.3.2-1.el7
[2025-11-21 17:48:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 17:48:22] cg-vwn472.simple-grid.lan
[2025-11-21 17:48:22] apptainer works
[2025-11-21 17:48:22] Set ATHENA_PROC_NUMBER=8
[2025-11-21 17:48:22] Set ATHENA_CORE_NUMBER=8
[2025-11-21 17:48:22] Starting ATLAS job with PandaID=6891594827
[2025-11-21 17:48:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 16:54:56]  *** The last 200 lines of the pilot log: ***
[2025-11-22 16:54:56] 2025-11-22 15:53:54,204 | INFO     | time since job start (82893s) is within the limit (172800.0s)
[2025-11-22 16:54:56] 2025-11-22 15:53:54,431 | INFO     | monitor loop #5612: job 0:6891594827 is in state 'finished'
[2025-11-22 16:54:56] 2025-11-22 15:53:54,432 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 16:54:56] 2025-11-22 15:53:56,217 | INFO     | time since job start (82895s) is within the limit (172800.0s)
[2025-11-22 16:54:56] 2025-11-22 15:53:56,939 | INFO     | monitor loop #5613: job 0:6891594827 is in state 'finished'
[2025-11-22 16:54:56] 2025-11-22 15:53:56,940 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 16:54:56] 2025-11-22 15:53:58,228 | INFO     | time since job start (82897s) is within the limit (172800.0s)
[2025-11-22 16:54:56] 2025-11-22 15:53:59,444 | INFO     | monitor loop #5614: job 0:6891594827 is in state 'finished'
[2025-11-22 16:54:56] 2025-11-22 15:53:59,445 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 16:54:56] 2025-11-22 15:54:00,238 | INFO     | time since job start (82899s) is within the limit (172800.0s)
[2025-11-22 16:54:56] 2025-11-22 15:54:01,949 | INFO     | monitor loop #5615: job 0:6891594827 is in state 'finished'
[2025-11-22 16:54:56] 2025-11-22 15:54:01,950 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 16:54:56] 2025-11-22 15:54:02,246 | INFO     | time since job start (82901s) is within the limit (172800.0s)
[2025-11-22 16:54:56] 2025-11-22 15:54:03,469 | INFO     | PID=19274 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 16:54:56] 2025-11-22 15:54:03,469 | INFO     | .. there are 9 such processes running
[2025-11-22 16:54:56] 2025-11-22 15:54:03,705 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 16:54:56] 2025-11-22 15:54:03,708 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-22 16:54:56] 2025-11-22 15:54:03,710 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6891594827/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 16:54:56] 2025-11-22 15:54:03,711 | INFO     | extracted standard info from prmon json
[2025-11-22 16:54:56] 2025-11-22 15:54:03,711 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 16:54:56] 2025-11-22 15:54:03,711 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 16:54:56] 2025-11-22 15:54:03,735 | INFO     | fitting pss+swap vs Time
[2025-11-22 16:54:56] 2025-11-22 15:54:03,737 | INFO     | sum of square deviations: 761228498256.7688
[2025-11-22 16:54:56] 2025-11-22 15:54:03,782 | INFO     | sum of deviations: 3604480077121.8267
[2025-11-22 16:54:56] 2025-11-22 15:54:03,782 | INFO     | mean x: 1763785591.255745
[2025-11-22 16:54:56] 2025-11-22 15:54:03,782 | INFO     | mean y: 2851406.6352853966
[2025-11-22 16:54:56] 2025-11-22 15:54:03,782 | INFO     | intersect: -8348819660.0086565
[2025-11-22 16:54:56] 2025-11-22 15:54:03,784 | INFO     | chi2: 21.639432721878165
[2025-11-22 16:54:56] 2025-11-22 15:54:03,786 | INFO     | sum of square deviations: 752796000988.8529
[2025-11-22 16:54:56] 2025-11-22 15:54:03,842 | INFO     | sum of deviations: 4048663943571.7407
[2025-11-22 16:54:56] 2025-11-22 15:54:03,843 | INFO     | mean x: 1763785438.7604167
[2025-11-22 16:54:56] 2025-11-22 15:54:03,843 | INFO     | mean y: 2859438.589285714
[2025-11-22 16:54:56] 2025-11-22 15:54:03,843 | INFO     | intersect: -9483076327.177227
[2025-11-22 16:54:56] 2025-11-22 15:54:03,844 | INFO     | chi2: 18.614926214474554
[2025-11-22 16:54:56] 2025-11-22 15:54:03,844 | INFO     | current chi2=18.614926214474554 (change=13.976828996749704 %)
[2025-11-22 16:54:56] 2025-11-22 15:54:03,845 | INFO     | right removable region: 1343
[2025-11-22 16:54:56] 2025-11-22 15:54:03,846 | INFO     | sum of square deviations: 752794967648.8547
[2025-11-22 16:54:56] 2025-11-22 15:54:03,896 | INFO     | sum of deviations: 3027592733625.7954
[2025-11-22 16:54:56] 2025-11-22 15:54:03,897 | INFO     | mean x: 1763785743.7604167
[2025-11-22 16:54:56] 2025-11-22 15:54:03,897 | INFO     | mean y: 2861838.157738095
[2025-11-22 16:54:56] 2025-11-22 15:54:03,897 | INFO     | intersect: -7090736194.464459
[2025-11-22 16:54:56] 2025-11-22 15:54:03,898 | INFO     | chi2: 16.614532320184583
[2025-11-22 16:54:56] 2025-11-22 15:54:03,899 | INFO     | current chi2=16.614532320184583 (change=23.22103571880258 %)
[2025-11-22 16:54:56] 2025-11-22 15:54:03,899 | INFO     | left removable region: 10
[2025-11-22 16:54:56] 2025-11-22 15:54:03,900 | INFO     | sum of square deviations: 734462157927.2344
[2025-11-22 16:54:56] 2025-11-22 15:54:03,947 | INFO     | sum of deviations: 3055274439608.2646
[2025-11-22 16:54:56] 2025-11-22 15:54:03,948 | INFO     | mean x: 1763785713.2708178
[2025-11-22 16:54:56] 2025-11-22 15:54:03,948 | INFO     | mean y: 2881158.8552138032
[2025-11-22 16:54:56] 2025-11-22 15:54:03,948 | INFO     | intersect: -7334255749.478806
[2025-11-22 16:54:56] 2025-11-22 15:54:03,949 | INFO     | chi2: 8.950117351823767
[2025-11-22 16:54:56] 2025-11-22 15:54:03,949 | INFO     | current memory leak: 4.16 B/s (using 1333 data points, chi2=8.95)
[2025-11-22 16:54:56] 2025-11-22 15:54:03,952 | INFO     | could have reported an average CPU frequency of 2249 MHz (46 samples)
[2025-11-22 16:54:56] 2025-11-22 15:54:03,952 | INFO     | ..............................
[2025-11-22 16:54:56] 2025-11-22 15:54:03,952 | INFO     | . Timing measurements:
[2025-11-22 16:54:56] 2025-11-22 15:54:03,952 | INFO     | . get job = 0 s
[2025-11-22 16:54:56] 2025-11-22 15:54:03,952 | INFO     | . initial setup = 7 s
[2025-11-22 16:54:56] 2025-11-22 15:54:03,952 | INFO     | . payload setup = 175 s
[2025-11-22 16:54:56] 2025-11-22 15:54:03,953 | INFO     | . stage-in = 0 s
[2025-11-22 16:54:56] 2025-11-22 15:54:03,953 | INFO     | . payload execution = 82440 s
[2025-11-22 16:54:56] 2025-11-22 15:54:03,953 | INFO     | . stage-out = 5 s
[2025-11-22 16:54:56] 2025-11-22 15:54:03,953 | INFO     | . log creation = 2 s
[2025-11-22 16:54:56] 2025-11-22 15:54:03,953 | INFO     | ..............................
[2025-11-22 16:54:56] 2025-11-22 15:54:04,103 | INFO     | 
[2025-11-22 16:54:56] 2025-11-22 15:54:04,104 | INFO     | job summary report
[2025-11-22 16:54:56] 2025-11-22 15:54:04,104 | INFO     | --------------------------------------------------
[2025-11-22 16:54:56] 2025-11-22 15:54:04,104 | INFO     | PanDA job id: 6891594827
[2025-11-22 16:54:56] 2025-11-22 15:54:04,104 | INFO     | task id: 47493068
[2025-11-22 16:54:56] 2025-11-22 15:54:04,104 | INFO     | errors: (none)
[2025-11-22 16:54:56] 2025-11-22 15:54:04,104 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 16:54:56] 2025-11-22 15:54:04,104 | INFO     | pilot state: finished 
[2025-11-22 16:54:56] 2025-11-22 15:54:04,104 | INFO     | transexitcode: 0
[2025-11-22 16:54:56] 2025-11-22 15:54:04,104 | INFO     | exeerrorcode: 0
[2025-11-22 16:54:56] 2025-11-22 15:54:04,104 | INFO     | exeerrordiag: 
[2025-11-22 16:54:56] 2025-11-22 15:54:04,104 | INFO     | exitcode: 0
[2025-11-22 16:54:56] 2025-11-22 15:54:04,104 | INFO     | exitmsg: OK
[2025-11-22 16:54:56] 2025-11-22 15:54:04,104 | INFO     | cpuconsumptiontime: 304569 s
[2025-11-22 16:54:56] 2025-11-22 15:54:04,104 | INFO     | nevents: 1000
[2025-11-22 16:54:56] 2025-11-22 15:54:04,105 | INFO     | neventsw: 0
[2025-11-22 16:54:56] 2025-11-22 15:54:04,105 | INFO     | pid: 25852
[2025-11-22 16:54:56] 2025-11-22 15:54:04,105 | INFO     | pgrp: 25852
[2025-11-22 16:54:56] 2025-11-22 15:54:04,105 | INFO     | corecount: 8
[2025-11-22 16:54:56] 2025-11-22 15:54:04,105 | INFO     | event service: False
[2025-11-22 16:54:56] 2025-11-22 15:54:04,105 | INFO     | sizes: {0: 2298569, 1: 2298824, 12: 2298824, 23: 2298852, 33: 2298880, 44: 2298936, 55: 2299092, 66: 2299120, 76: 2299148, 87: 2299204, 96: 2299494, 98: 2299802, 8
[2025-11-22 16:54:56] 2025-11-22 15:54:04,105 | INFO     | --------------------------------------------------
[2025-11-22 16:54:56] 2025-11-22 15:54:04,105 | INFO     | 
[2025-11-22 16:54:56] 2025-11-22 15:54:04,105 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-22 16:54:56] 2025-11-22 15:54:04,476 | INFO     | time since job start (82903s) is within the limit (172800.0s)
[2025-11-22 16:54:56] 2025-11-22 15:54:04,571 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 16:54:56] 2025-11-22 15:54:04,571 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 16:54:56] 2025-11-22 15:54:04,571 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 16:54:56] 2025-11-22 15:54:04,571 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 16:54:56] 2025-11-22 15:54:04,571 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 16:54:56] 2025-11-22 15:54:04,571 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 16:54:56] 2025-11-22 15:54:04,571 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 16:54:56] 2025-11-22 15:54:04,571 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 16:54:56] 2025-11-22 15:54:04,572 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 16:54:56] 2025-11-22 15:54:04,572 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 16:54:56] 2025-11-22 15:54:04,572 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 16:54:56] 2025-11-22 15:54:04,572 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 16:54:56] 2025-11-22 15:54:04,572 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 16:54:56] 2025-11-22 15:54:04,572 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 16:54:56] 2025-11-22 15:54:04,572 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 16:54:56] 2025-11-22 15:54:04,572 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 16:54:56] 2025-11-22 15:54:04,572 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 16:54:56] 2025-11-22 15:54:04,572 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 16:54:56] 2025-11-22 15:54:04,572 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 16:54:56] 2025-11-22 15:54:04,572 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 16:54:56] 2025-11-22 15:54:04,573 | INFO     | job 6891594827 has completed (purged errors)
[2025-11-22 16:54:56] 2025-11-22 15:54:04,573 | INFO     | overall cleanup function is called
[2025-11-22 16:54:56] 2025-11-22 15:54:05,596 | INFO     | --- collectZombieJob: --- 10, [25852]
[2025-11-22 16:54:56] 2025-11-22 15:54:05,597 | INFO     | zombie collector waiting for pid 25852
[2025-11-22 16:54:56] 2025-11-22 15:54:05,597 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 16:54:56] 2025-11-22 15:54:05,597 | INFO     | collected zombie processes
[2025-11-22 16:54:56] 2025-11-22 15:54:05,597 | INFO     | will attempt to kill all subprocesses of pid=25852
[2025-11-22 16:54:56] 2025-11-22 15:54:05,701 | INFO     | process IDs to be killed: [25852] (in reverse order)
[2025-11-22 16:54:56] 2025-11-22 15:54:06,352 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 16:54:56] 2025-11-22 15:54:06,353 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 16:54:56] 2025-11-22 15:54:06,356 | INFO     | did not find any defunct processes belonging to 25852
[2025-11-22 16:54:56] 2025-11-22 15:54:06,359 | INFO     | did not find any defunct processes belonging to 25852
[2025-11-22 16:54:56] 2025-11-22 15:54:06,425 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 16:54:56] 2025-11-22 15:54:06,425 | INFO     | ready for new job
[2025-11-22 16:54:56] 2025-11-22 15:54:06,425 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 16:54:56] 2025-11-22 15:54:06,431 | INFO     | ***************************************
[2025-11-22 16:54:56] 2025-11-22 15:54:06,431 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 16:54:56] 2025-11-22 15:54:06,432 | INFO     | ***************************************
[2025-11-22 16:54:56] 2025-11-22 15:54:06,432 | INFO     | 
[2025-11-22 16:54:56] 2025-11-22 15:54:06,432 | INFO     | pilot is running in a VM
[2025-11-22 16:54:56] 2025-11-22 15:54:06,432 | INFO     | architecture information:
[2025-11-22 16:54:56] 2025-11-22 15:54:06,438 | INFO     | executing command: cat /etc/os-release
[2025-11-22 16:54:56] 2025-11-22 15:54:06,718 | INFO     | cat /etc/os-release:
[2025-11-22 16:54:56] NAME="CentOS Linux"
[2025-11-22 16:54:56] VERSION="7 (Core)"
[2025-11-22 16:54:56] ID="centos"
[2025-11-22 16:54:56] ID_LIKE="rhel fedora"
[2025-11-22 16:54:56] VERSION_ID="7"
[2025-11-22 16:54:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 16:54:56] ANSI_COLOR="0;31"
[2025-11-22 16:54:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 16:54:56] HOME_URL="https://www.centos.org/"
[2025-11-22 16:54:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 16:54:56] 
[2025-11-22 16:54:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 16:54:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 16:54:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 16:54:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 16:54:56] 
[2025-11-22 16:54:56] 2025-11-22 15:54:06,718 | INFO     | ***************************************
[2025-11-22 16:54:56] 2025-11-22 15:54:07,222 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-22 16:54:56] 2025-11-22 15:54:07,305 | INFO     | sufficient remaining disk space (495185821696 B)
[2025-11-22 16:54:56] 2025-11-22 15:54:07,306 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 16:54:56] 2025-11-22 15:54:07,306 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 16:54:56] 2025-11-22 15:54:07,306 | INFO     | update_server=False
[2025-11-22 16:54:56] 2025-11-22 15:54:07,306 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 16:54:56] 2025-11-22 15:54:07,307 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 16:54:56] 2025-11-22 15:54:07,862 | INFO     | all data control threads have been joined
[2025-11-22 16:54:56] 2025-11-22 15:54:07,993 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 16:54:56] 2025-11-22 15:54:07,994 | INFO     | aborting loop
[2025-11-22 16:54:56] 2025-11-22 15:54:08,262 | INFO     | all payload control threads have been joined
[2025-11-22 16:54:56] 2025-11-22 15:54:08,312 | INFO     | [job] retrieve thread has finished
[2025-11-22 16:54:56] 2025-11-22 15:54:08,398 | INFO     | all job control threads have been joined
[2025-11-22 16:54:56] 2025-11-22 15:54:08,428 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 16:54:56] 2025-11-22 15:54:08,429 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 16:54:56] 2025-11-22 15:54:08,601 | INFO     | [data] copytool_in thread has finished
[2025-11-22 16:54:56] 2025-11-22 15:54:08,826 | INFO     | [job] validate thread has finished
[2025-11-22 16:54:56] 2025-11-22 15:54:08,840 | INFO     | [payload] validate_post thread has finished
[2025-11-22 16:54:56] 2025-11-22 15:54:08,868 | INFO     | [data] control thread has finished
[2025-11-22 16:54:56] 2025-11-22 15:54:08,999 | INFO     | [job] job monitor thread has finished
[2025-11-22 16:54:56] 2025-11-22 15:54:09,117 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 16:54:56] 2025-11-22 15:54:09,179 | INFO     | [payload] failed_post thread has finished
[2025-11-22 16:54:56] 2025-11-22 15:54:09,216 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 16:54:56] 2025-11-22 15:54:09,268 | INFO     | [payload] control thread has finished
[2025-11-22 16:54:56] 2025-11-22 15:54:09,314 | INFO     | [data] copytool_out thread has finished
[2025-11-22 16:54:56] 2025-11-22 15:54:09,404 | INFO     | [job] control thread has finished
[2025-11-22 16:54:56] 2025-11-22 15:54:09,745 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 16:54:56] 2025-11-22 15:54:09,940 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 16:54:56] 2025-11-22 15:54:10,123 | INFO     | [job] queue monitor thread has finished
[2025-11-22 16:54:56] 2025-11-22 15:54:13,949 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 16:54:56] 2025-11-22 15:54:37,646 | INFO     | PID=19274 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 16:54:56] 2025-11-22 15:54:37,646 | INFO     | .. there are 9 such processes running
[2025-11-22 16:54:56] 2025-11-22 15:54:37,647 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 16:54:56] 2025-11-22 15:54:37,647 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 16:54:56] 2025-11-22 15:54:37,647 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 16:54:56] 2025-11-22 15:54:45,232 | INFO     | [monitor] cgroup control has ended
[2025-11-22 16:54:56] 2025-11-22 15:54:46,108 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140628448098112)>', '<ExcThread(monitor, started 140627429816064)>']
[2025-11-22 16:54:56] 2025-11-22 15:54:46,700 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 16:54:56] 2025-11-22 15:54:46,701 | INFO     | [monitor] control thread has ended
[2025-11-22 16:54:56] 2025-11-22 15:54:51,134 | INFO     | all workflow threads have been joined
[2025-11-22 16:54:56] 2025-11-22 15:54:51,135 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 16:54:56] 2025-11-22 15:54:51,135 | INFO     | traces error code: 0
[2025-11-22 16:54:56] 2025-11-22 15:54:51,135 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 16:54:56] 2025-11-22 15:54:51,596 [wrapper] ==== pilot stdout END ====
[2025-11-22 16:54:56] 2025-11-22 15:54:51,690 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 16:54:56] 2025-11-22 15:54:51,781 [wrapper] pilotpid: 19274
[2025-11-22 16:54:56] 2025-11-22 15:54:51,885 [wrapper] Pilot exit status: 0
[2025-11-22 16:54:56] 2025-11-22 15:54:52,278 [wrapper] pandaids: 6891594827
[2025-11-22 16:54:56] 2025-11-22 15:54:52,939 [wrapper] cleanup supervisor_pilot  2278 19275
[2025-11-22 16:54:56] 2025-11-22 15:54:53,008 [wrapper] Test setup, not cleaning
[2025-11-22 16:54:56] 2025-11-22 15:54:53,085 [wrapper] apfmon messages muted
[2025-11-22 16:54:56] 2025-11-22 15:54:53,194 [wrapper] ==== wrapper stdout END ====
[2025-11-22 16:54:56] 2025-11-22 15:54:53,297 [wrapper] ==== wrapper stderr END ====
[2025-11-22 16:54:56]  *** Error codes and diagnostics ***
[2025-11-22 16:54:56]     "exeErrorCode": 0,
[2025-11-22 16:54:56]     "exeErrorDiag": "",
[2025-11-22 16:54:56]     "pilotErrorCode": 0,
[2025-11-22 16:54:56]     "pilotErrorDiag": "",
[2025-11-22 16:54:56]  *** Listing of results directory ***
[2025-11-22 16:54:56] total 1322236
[2025-11-22 16:54:56] -rw-r--r--. 1 boinc boinc    576529 Nov 18 19:36 pilot3.tar.gz
[2025-11-22 16:54:56] -rw-r--r--. 1 boinc boinc      5112 Nov 18 19:40 queuedata.json
[2025-11-22 16:54:56] -rwx------. 1 boinc boinc     36292 Nov 18 19:41 runpilot2-wrapper.sh
[2025-11-22 16:54:56] -rw-r--r--. 1 boinc boinc       100 Nov 21 17:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 16:54:56] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 17:47 run_atlas
[2025-11-22 16:54:56] -rw-r--r--. 1 boinc boinc       105 Nov 21 17:47 job.xml
[2025-11-22 16:54:56] -rw-r--r--. 1 boinc boinc      6391 Nov 21 17:47 init_data.xml
[2025-11-22 16:54:56] -rw-r--r--. 2 boinc boinc 407522000 Nov 21 17:47 EVNT.47493065._000765.pool.root.1
[2025-11-22 16:54:56] -rw-r--r--. 2 boinc boinc     15120 Nov 21 17:47 start_atlas.sh
[2025-11-22 16:54:56] drwxrwx--x. 2 boinc boinc        68 Nov 21 17:47 shared
[2025-11-22 16:54:56] -rw-r--r--. 2 boinc boinc    590092 Nov 21 17:47 input.tar.gz
[2025-11-22 16:54:56] -rw-r--r--. 1 boinc boinc         0 Nov 21 17:47 boinc_lockfile
[2025-11-22 16:54:56] -rw-r--r--. 1 boinc boinc      2773 Nov 21 17:48 pandaJob.out
[2025-11-22 16:54:56] -rw-------. 1 boinc boinc    989817 Nov 21 17:52 agis_schedconf.cvmfs.json
[2025-11-22 16:54:56] drwx------. 5 boinc boinc      4096 Nov 21 17:52 pilot3
[2025-11-22 16:54:56] -rw-r--r--. 1 boinc boinc       533 Nov 22 16:34 boinc_task_state.xml
[2025-11-22 16:54:56] -rw-------. 1 boinc boinc 915399107 Nov 22 16:51 HITS.47493068._006299.pool.root.1
[2025-11-22 16:54:56] -rw-------. 1 boinc boinc      1031 Nov 22 16:52 memory_monitor_summary.json
[2025-11-22 16:54:56] -rw-------. 1 boinc boinc   1526164 Nov 22 16:52 agis_ddmendpoints.agis.ALL.json
[2025-11-22 16:54:56] -rw-------. 1 boinc boinc   2465457 Nov 22 16:52 log.47493068._006299.job.log.tgz.1
[2025-11-22 16:54:56] -rw-------. 1 boinc boinc        95 Nov 22 16:53 pilot_heartbeat.json
[2025-11-22 16:54:56] -rw-------. 1 boinc boinc      8622 Nov 22 16:54 heartbeat.json
[2025-11-22 16:54:56] -rw-r--r--. 1 boinc boinc      8192 Nov 22 16:54 boinc_mmap_file
[2025-11-22 16:54:56] -rw-r--r--. 1 boinc boinc        29 Nov 22 16:54 wrapper_checkpoint.txt
[2025-11-22 16:54:56] -rw-------. 1 boinc boinc      4884 Nov 22 16:54 pilotlog.txt
[2025-11-22 16:54:56] -rw-------. 1 boinc boinc  11103840 Nov 22 16:54 log.47493068._006299.job.log.1
[2025-11-22 16:54:56] -rw-------. 1 boinc boinc       353 Nov 22 16:54 output.list
[2025-11-22 16:54:56] -rw-r--r--. 1 boinc boinc       620 Nov 22 16:54 runtime_log
[2025-11-22 16:54:56] -rw-------. 1 boinc boinc  13588480 Nov 22 16:54 result.tar.gz
[2025-11-22 16:54:56] -rw-r--r--. 1 boinc boinc      8703 Nov 22 16:54 runtime_log.err
[2025-11-22 16:54:56] -rw-------. 1 boinc boinc       662 Nov 22 16:54 hV2LDm9off8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1IGKDmP5txMn.diag
[2025-11-22 16:54:56] -rw-r--r--. 1 boinc boinc     21506 Nov 22 16:54 stderr.txt
[2025-11-22 16:54:56] HITS file was successfully produced:
[2025-11-22 16:54:56] -rw-------. 1 boinc boinc 915399107 Nov 22 16:51 shared/HITS.pool.root.1
[2025-11-22 16:54:56]  *** Contents of shared directory: ***
[2025-11-22 16:54:56] total 1305788
[2025-11-22 16:54:56] -rw-r--r--. 2 boinc boinc 407522000 Nov 21 17:47 ATLAS.root_0
[2025-11-22 16:54:56] -rw-r--r--. 2 boinc boinc     15120 Nov 21 17:47 start_atlas.sh
[2025-11-22 16:54:56] -rw-r--r--. 2 boinc boinc    590092 Nov 21 17:47 input.tar.gz
[2025-11-22 16:54:56] -rw-------. 1 boinc boinc 915399107 Nov 22 16:51 HITS.pool.root.1
[2025-11-22 16:54:56] -rw-------. 1 boinc boinc  13588480 Nov 22 16:54 result.tar.gz
16:54:57 (15506): run_atlas exited; CPU time 304988.231976
16:54:57 (15506): called boinc_finish(0)

</stderr_txt>
]]>

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