Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:56:29 (1510508): wrapper (7.7.26015): starting
00:56:29 (1510508): wrapper: running run_atlas (--nthreads 3)
[2025-11-19 00:56:29] Arguments: --nthreads 3
[2025-11-19 00:56:29] Threads: 3
[2025-11-19 00:56:29] Checking for CVMFS
[2025-11-19 00:56:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 00:56:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 00:56:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 00:56:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 00:56:29] 2.9.2.0 4099368 337 66712 153021 3 88 34183416 36864001 0 130560 0 4822821 99.971 145367 7853 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-19 00:56:29] CVMFS is ok
[2025-11-19 00:56:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 00:56:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 00:56:29] Further information can be found at the LHC@home message board.
[2025-11-19 00:56:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 00:56:29] Checking for apptainer binary...
[2025-11-19 00:56:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 00:56:29] Running /usr/bin/apptainer --version
[2025-11-19 00:56:30] apptainer version 1.4.1-1.1
[2025-11-19 00:56:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 00:56:30] thA335
[2025-11-19 00:56:30] apptainer works
[2025-11-19 00:56:30] Set ATHENA_PROC_NUMBER=3
[2025-11-19 00:56:30] Set ATHENA_CORE_NUMBER=3
[2025-11-19 00:56:30] Starting ATLAS job with PandaID=6891596298
[2025-11-19 00:56:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-19 01:00:48]  *** The last 200 lines of the pilot log: ***
[2025-11-19 01:00:48] 2025-11-18 23:59:57,090 | INFO     | ***************************************
[2025-11-19 01:00:48] 2025-11-18 23:59:57,593 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-19 01:00:48] 2025-11-18 23:59:57,607 | INFO     | sufficient remaining disk space (827866480640 B)
[2025-11-19 01:00:48] 2025-11-18 23:59:57,607 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-19 01:00:48] 2025-11-18 23:59:57,607 | INFO     | current server update state: UPDATING_FINAL
[2025-11-19 01:00:48] 2025-11-18 23:59:57,607 | INFO     | update_server=False
[2025-11-19 01:00:48] 2025-11-18 23:59:57,607 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-19 01:00:48] 2025-11-18 23:59:57,607 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-19 01:00:48] 2025-11-18 23:59:57,608 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-19 01:00:48] 2025-11-18 23:59:57,678 | INFO     | all data control threads have been joined
[2025-11-19 01:00:48] 2025-11-18 23:59:58,031 | INFO     | all payload control threads have been joined
[2025-11-19 01:00:48] 2025-11-18 23:59:58,439 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-19 01:00:48] 2025-11-18 23:59:58,440 | INFO     | aborting loop
[2025-11-19 01:00:48] 2025-11-18 23:59:58,606 | INFO     | all job control threads have been joined
[2025-11-19 01:00:48] 2025-11-18 23:59:58,613 | INFO     | [job] retrieve thread has finished
[2025-11-19 01:00:48] 2025-11-18 23:59:58,614 | INFO     | [job] queue monitor thread has finished
[2025-11-19 01:00:48] 2025-11-18 23:59:58,627 | INFO     | [payload] validate_post thread has finished
[2025-11-19 01:00:48] 2025-11-18 23:59:58,684 | INFO     | [data] control thread has finished
[2025-11-19 01:00:48] 2025-11-18 23:59:58,822 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-19 01:00:48] 2025-11-18 23:59:59,022 | INFO     | [job] validate thread has finished
[2025-11-19 01:00:48] 2025-11-18 23:59:59,036 | INFO     | [payload] control thread has finished
[2025-11-19 01:00:48] 2025-11-18 23:59:59,116 | INFO     | [job] create_data_payload thread has finished
[2025-11-19 01:00:48] 2025-11-18 23:59:59,168 | INFO     | [payload] validate_pre thread has finished
[2025-11-19 01:00:48] 2025-11-18 23:59:59,317 | INFO     | [data] copytool_in thread has finished
[2025-11-19 01:00:48] 2025-11-18 23:59:59,431 | INFO     | [payload] execute_payloads thread has finished
[2025-11-19 01:00:48] 2025-11-18 23:59:59,443 | INFO     | [job] job monitor thread has finished
[2025-11-19 01:00:48] 2025-11-18 23:59:59,612 | INFO     | [job] control thread has finished
[2025-11-19 01:00:48] 2025-11-18 23:59:59,614 | INFO     | [data] copytool_out thread has finished
[2025-11-19 01:00:48] 2025-11-18 23:59:59,677 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-19 01:00:48] 2025-11-19 00:00:00,012 | INFO     | [payload] failed_post thread has finished
[2025-11-19 01:00:48] 2025-11-19 00:00:03,684 | INFO     | [data] queue_monitor thread has finished
[2025-11-19 01:00:48] 2025-11-19 00:00:27,123 | INFO     | PID=1514233 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-19 01:00:48] 2025-11-19 00:00:27,124 | INFO     | found 0 job(s) in 20 queues
[2025-11-19 01:00:48] 2025-11-19 00:00:27,124 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-19 01:00:48] 2025-11-19 00:00:27,124 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-19 01:00:48] 2025-11-19 00:00:42,294 | INFO     | [monitor] cgroup control has ended
[2025-11-19 01:00:48] 2025-11-19 00:00:43,548 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140178222724928)>', '<ExcThread(monitor, started 140177582315264)>']
[2025-11-19 01:00:48] 2025-11-19 00:00:44,214 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-19 01:00:48] 2025-11-19 00:00:44,215 | INFO     | [monitor] control thread has ended
[2025-11-19 01:00:48] 2025-11-19 00:00:48,575 | INFO     | all workflow threads have been joined
[2025-11-19 01:00:48] 2025-11-19 00:00:48,576 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-19 01:00:48] 2025-11-19 00:00:48,577 | INFO     | traces error code: 0
[2025-11-19 01:00:48] 2025-11-19 00:00:48,577 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-19 01:00:48] 2025-11-19 00:00:48,625 [wrapper] ==== pilot stdout END ====
[2025-11-19 01:00:48] 2025-11-19 00:00:48,628 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-19 01:00:48] 2025-11-19 00:00:48,631 [wrapper] pilotpid: 1514233
[2025-11-19 01:00:48] 2025-11-19 00:00:48,634 [wrapper] Pilot exit status: 0
[2025-11-19 01:00:48] 2025-11-19 00:00:48,641 [wrapper] pandaids: 6891596298
[2025-11-19 01:00:48] 2025-11-19 00:00:48,660 [wrapper] cleanup supervisor_pilot 1514239 1514234
[2025-11-19 01:00:48] 2025-11-19 00:00:48,662 [wrapper] Test setup, not cleaning
[2025-11-19 01:00:48] 2025-11-19 00:00:48,665 [wrapper] apfmon messages muted
[2025-11-19 01:00:48] 2025-11-19 00:00:48,667 [wrapper] ==== wrapper stdout END ====
[2025-11-19 01:00:48] 2025-11-19 00:00:48,670 [wrapper] ==== wrapper stderr END ====
[2025-11-19 01:00:48]  *** Error codes and diagnostics ***
[2025-11-19 01:00:48]     "exeErrorCode": 65,
[2025-11-19 01:00:48]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-19 01:00:48]     "pilotErrorCode": 1305,
[2025-11-19 01:00:48]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-19 01:00:48]  *** Listing of results directory ***
[2025-11-19 01:00:48] total 406820
[2025-11-19 01:00:48] -rw-r--r-- 1 boinc boinc    576529 Nov 18 19:36 pilot3.tar.gz
[2025-11-19 01:00:48] -rw-r--r-- 1 boinc boinc      5112 Nov 18 19:45 queuedata.json
[2025-11-19 01:00:48] -rwx------ 1 boinc boinc     36292 Nov 18 19:47 runpilot2-wrapper.sh
[2025-11-19 01:00:48] -rw-r--r-- 1 boinc boinc       100 Nov 19 00:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-19 01:00:48] -rwxr-xr-x 1 boinc boinc      7986 Nov 19 00:56 run_atlas
[2025-11-19 01:00:48] -rw-r--r-- 1 boinc boinc       105 Nov 19 00:56 job.xml
[2025-11-19 01:00:48] -rw-r--r-- 2 boinc boinc 412383110 Nov 19 00:56 EVNT.47493065._000775.pool.root.1
[2025-11-19 01:00:48] -rw-r--r-- 2 boinc boinc    590098 Nov 19 00:56 input.tar.gz
[2025-11-19 01:00:48] drwxrwx--x 2 boinc boinc      4096 Nov 19 00:56 shared
[2025-11-19 01:00:48] -rw-r--r-- 2 boinc boinc     15120 Nov 19 00:56 start_atlas.sh
[2025-11-19 01:00:48] -rw-r--r-- 1 boinc boinc         0 Nov 19 00:56 boinc_setup_complete
[2025-11-19 01:00:48] -rw-r--r-- 1 boinc boinc      6193 Nov 19 00:56 init_data.xml
[2025-11-19 01:00:48] -rw-r--r-- 1 boinc boinc         0 Nov 19 00:56 boinc_lockfile
[2025-11-19 01:00:48] -rw-r--r-- 1 boinc boinc      2772 Nov 19 00:56 pandaJob.out
[2025-11-19 01:00:48] -rw------- 1 boinc boinc    992790 Nov 19 00:56 agis_schedconf.cvmfs.json
[2025-11-19 01:00:48] -rw------- 1 boinc boinc   1525063 Nov 19 00:56 agis_ddmendpoints.agis.ALL.json
[2025-11-19 01:00:48] drwx------ 5 boinc boinc      4096 Nov 19 00:56 pilot3
[2025-11-19 01:00:48] -rw-r--r-- 1 boinc boinc       523 Nov 19 00:57 boinc_task_state.xml
[2025-11-19 01:00:48] -rw------- 1 boinc boinc       959 Nov 19 00:57 memory_monitor_summary.json
[2025-11-19 01:00:48] -rw------- 1 boinc boinc     55765 Nov 19 00:57 log.47493068._006400.job.log.tgz.1
[2025-11-19 01:00:48] -rw------- 1 boinc boinc        95 Nov 19 00:59 pilot_heartbeat.json
[2025-11-19 01:00:48] -rw------- 1 boinc boinc      8412 Nov 19 00:59 heartbeat.json
[2025-11-19 01:00:48] -rw-r--r-- 1 boinc boinc      8192 Nov 19 01:00 boinc_mmap_file
[2025-11-19 01:00:48] -rw-r--r-- 1 boinc boinc        23 Nov 19 01:00 wrapper_checkpoint.txt
[2025-11-19 01:00:48] -rw------- 1 boinc boinc      4752 Nov 19 01:00 pilotlog.txt
[2025-11-19 01:00:48] -rw------- 1 boinc boinc     93412 Nov 19 01:00 log.47493068._006400.job.log.1
[2025-11-19 01:00:48] -rw------- 1 boinc boinc       186 Nov 19 01:00 output.list
[2025-11-19 01:00:48] -rw-r--r-- 1 boinc boinc       620 Nov 19 01:00 runtime_log
[2025-11-19 01:00:48] -rw------- 1 boinc boinc    163840 Nov 19 01:00 result.tar.gz
[2025-11-19 01:00:48] -rw-r--r-- 1 boinc boinc      8624 Nov 19 01:00 runtime_log.err
[2025-11-19 01:00:48] -rw------- 1 boinc boinc       649 Nov 19 01:00 BuhNDmVuff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMKGKDmyBpA2m.diag
[2025-11-19 01:00:48] -rw-r--r-- 1 boinc boinc      8337 Nov 19 01:00 stderr.txt
[2025-11-19 01:00:48] No HITS result produced
[2025-11-19 01:00:48]  *** Contents of shared directory: ***
[2025-11-19 01:00:48] total 403480
[2025-11-19 01:00:48] -rw-r--r-- 2 boinc boinc 412383110 Nov 19 00:56 ATLAS.root_0
[2025-11-19 01:00:48] -rw-r--r-- 2 boinc boinc    590098 Nov 19 00:56 input.tar.gz
[2025-11-19 01:00:48] -rw-r--r-- 2 boinc boinc     15120 Nov 19 00:56 start_atlas.sh
[2025-11-19 01:00:48] -rw------- 1 boinc boinc    163840 Nov 19 01:00 result.tar.gz
01:00:50 (1510508): run_atlas exited; CPU time 32.062530
01:00:50 (1510508): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN