Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:39:11 (3364187): wrapper (7.7.26015): starting
21:39:11 (3364187): wrapper: running run_atlas (--nthreads 3)
[2025-11-20 21:39:11] Arguments: --nthreads 3
[2025-11-20 21:39:11] Threads: 3
[2025-11-20 21:39:11] Checking for CVMFS
[2025-11-20 21:39:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 21:39:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 21:39:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 21:39:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 21:39:11] 2.9.2.0 2923852 3265 80900 153088 3 81 35364089 36864000 0 130560 0 1231153 99.820 288776 6387 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-20 21:39:11] CVMFS is ok
[2025-11-20 21:39:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 21:39:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 21:39:11] Further information can be found at the LHC@home message board.
[2025-11-20 21:39:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 21:39:11] Checking for apptainer binary...
[2025-11-20 21:39:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 21:39:11] Running /usr/bin/apptainer --version
[2025-11-20 21:39:11] apptainer version 1.4.1-1.1
[2025-11-20 21:39:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 21:39:11] magicA161a
[2025-11-20 21:39:11] apptainer works
[2025-11-20 21:39:11] Set ATHENA_PROC_NUMBER=3
[2025-11-20 21:39:11] Set ATHENA_CORE_NUMBER=3
[2025-11-20 21:39:11] Starting ATLAS job with PandaID=6891594166
[2025-11-20 21:39:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 05:31:03]  *** The last 200 lines of the pilot log: ***
[2025-11-21 05:31:03] 2025-11-21 04:30:32,605 | INFO     | collected zombie processes
[2025-11-21 05:31:03] 2025-11-21 04:30:32,605 | INFO     | will attempt to kill all subprocesses of pid=3374346
[2025-11-21 05:31:03] 2025-11-21 04:30:32,648 | INFO     | process IDs to be killed: [3374346] (in reverse order)
[2025-11-21 05:31:03] 2025-11-21 04:30:32,671 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 05:31:03] 2025-11-21 04:30:32,671 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 05:31:03] 2025-11-21 04:30:32,672 | INFO     | did not find any defunct processes belonging to 3374346
[2025-11-21 05:31:03] 2025-11-21 04:30:32,673 | INFO     | did not find any defunct processes belonging to 3374346
[2025-11-21 05:31:03] 2025-11-21 04:30:32,674 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 05:31:03] 2025-11-21 04:30:32,674 | INFO     | ready for new job
[2025-11-21 05:31:03] 2025-11-21 04:30:32,674 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 05:31:03] 2025-11-21 04:30:32,675 | INFO     | ***************************************
[2025-11-21 05:31:03] 2025-11-21 04:30:32,675 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 05:31:03] 2025-11-21 04:30:32,675 | INFO     | ***************************************
[2025-11-21 05:31:03] 2025-11-21 04:30:32,675 | INFO     | 
[2025-11-21 05:31:03] 2025-11-21 04:30:32,676 | INFO     | architecture information:
[2025-11-21 05:31:03] 2025-11-21 04:30:32,676 | INFO     | executing command: cat /etc/os-release
[2025-11-21 05:31:03] 2025-11-21 04:30:32,684 | INFO     | cat /etc/os-release:
[2025-11-21 05:31:03] NAME="CentOS Linux"
[2025-11-21 05:31:03] VERSION="7 (Core)"
[2025-11-21 05:31:03] ID="centos"
[2025-11-21 05:31:03] ID_LIKE="rhel fedora"
[2025-11-21 05:31:03] VERSION_ID="7"
[2025-11-21 05:31:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 05:31:03] ANSI_COLOR="0;31"
[2025-11-21 05:31:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 05:31:03] HOME_URL="https://www.centos.org/"
[2025-11-21 05:31:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 05:31:03] 
[2025-11-21 05:31:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 05:31:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 05:31:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 05:31:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 05:31:03] 
[2025-11-21 05:31:03] 2025-11-21 04:30:32,684 | INFO     | ***************************************
[2025-11-21 05:31:03] 2025-11-21 04:30:33,188 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-21 05:31:03] 2025-11-21 04:30:33,201 | INFO     | sufficient remaining disk space (366063124480 B)
[2025-11-21 05:31:03] 2025-11-21 04:30:33,201 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 05:31:03] 2025-11-21 04:30:33,201 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 05:31:03] 2025-11-21 04:30:33,201 | INFO     | update_server=False
[2025-11-21 05:31:03] 2025-11-21 04:30:33,201 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 05:31:03] 2025-11-21 04:30:33,201 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 05:31:03] 2025-11-21 04:30:33,201 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 05:31:03] 2025-11-21 04:30:33,201 | INFO     | aborting loop
[2025-11-21 05:31:03] 2025-11-21 04:30:33,260 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 05:31:03] 2025-11-21 04:30:33,767 | INFO     | all job control threads have been joined
[2025-11-21 05:31:03] 2025-11-21 04:30:33,913 | INFO     | all payload control threads have been joined
[2025-11-21 05:31:03] 2025-11-21 04:30:34,207 | INFO     | [job] retrieve thread has finished
[2025-11-21 05:31:03] 2025-11-21 04:30:34,207 | INFO     | [job] queue monitor thread has finished
[2025-11-21 05:31:03] 2025-11-21 04:30:34,207 | INFO     | [job] job monitor thread has finished
[2025-11-21 05:31:03] 2025-11-21 04:30:34,255 | INFO     | all data control threads have been joined
[2025-11-21 05:31:03] 2025-11-21 04:30:34,278 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 05:31:03] 2025-11-21 04:30:34,310 | INFO     | [payload] failed_post thread has finished
[2025-11-21 05:31:03] 2025-11-21 04:30:34,531 | INFO     | [data] copytool_in thread has finished
[2025-11-21 05:31:03] 2025-11-21 04:30:34,773 | INFO     | [job] control thread has finished
[2025-11-21 05:31:03] 2025-11-21 04:30:34,839 | INFO     | [payload] validate_post thread has finished
[2025-11-21 05:31:03] 2025-11-21 04:30:34,919 | INFO     | [payload] control thread has finished
[2025-11-21 05:31:03] 2025-11-21 04:30:35,070 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 05:31:03] 2025-11-21 04:30:35,078 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 05:31:03] 2025-11-21 04:30:35,078 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 05:31:03] 2025-11-21 04:30:35,095 | INFO     | [job] validate thread has finished
[2025-11-21 05:31:03] 2025-11-21 04:30:35,261 | INFO     | [data] control thread has finished
[2025-11-21 05:31:03] 2025-11-21 04:30:35,263 | INFO     | [data] copytool_out thread has finished
[2025-11-21 05:31:03] 2025-11-21 04:30:35,657 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 05:31:03] 2025-11-21 04:30:38,283 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 05:31:03] 2025-11-21 04:30:49,612 | INFO     | [monitor] cgroup control has ended
[2025-11-21 05:31:03] 2025-11-21 04:30:51,189 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139900124297024)>', '<ExcThread(monitor, started 139899852265216)>']
[2025-11-21 05:31:03] 2025-11-21 04:30:56,215 | INFO     | all workflow threads have been joined
[2025-11-21 05:31:03] 2025-11-21 04:30:56,215 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 05:31:03] 2025-11-21 04:30:56,215 | INFO     | traces error code: 0
[2025-11-21 05:31:03] 2025-11-21 04:30:56,215 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 05:31:03] 2025-11-21 04:31:03,550 | INFO     | PID=3367906 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 05:31:03] 2025-11-21 04:31:03,550 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 05:31:03] 2025-11-21 04:31:03,550 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 05:31:03] 2025-11-21 04:31:03,550 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 05:31:03] 2025-11-21 04:31:03,550 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 05:31:03] 2025-11-21 04:31:03,550 | INFO     | [monitor] control thread has ended
[2025-11-21 05:31:03] 2025-11-21 04:31:03,596 [wrapper] ==== pilot stdout END ====
[2025-11-21 05:31:03] 2025-11-21 04:31:03,598 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 05:31:03] 2025-11-21 04:31:03,601 [wrapper] pilotpid: 3367906
[2025-11-21 05:31:03] 2025-11-21 04:31:03,603 [wrapper] Pilot exit status: 0
[2025-11-21 05:31:03] 2025-11-21 04:31:03,610 [wrapper] pandaids: 6891594166
[2025-11-21 05:31:03] 2025-11-21 04:31:03,625 [wrapper] cleanup supervisor_pilot 3425229 3367907
[2025-11-21 05:31:03] 2025-11-21 04:31:03,627 [wrapper] Test setup, not cleaning
[2025-11-21 05:31:03] 2025-11-21 04:31:03,630 [wrapper] apfmon messages muted
[2025-11-21 05:31:03] 2025-11-21 04:31:03,632 [wrapper] ==== wrapper stdout END ====
[2025-11-21 05:31:03] 2025-11-21 04:31:03,634 [wrapper] ==== wrapper stderr END ====
[2025-11-21 05:31:03]  *** Error codes and diagnostics ***
[2025-11-21 05:31:03]     "exeErrorCode": 0,
[2025-11-21 05:31:03]     "exeErrorDiag": "",
[2025-11-21 05:31:03]     "pilotErrorCode": 0,
[2025-11-21 05:31:03]     "pilotErrorDiag": "",
[2025-11-21 05:31:03]  *** Listing of results directory ***
[2025-11-21 05:31:03] total 1324224
[2025-11-21 05:31:03] -rw-r--r-- 1 boinc boinc      5112 Nov 18 19:35 queuedata.json
[2025-11-21 05:31:03] -rw-r--r-- 1 boinc boinc    576529 Nov 18 19:36 pilot3.tar.gz
[2025-11-21 05:31:03] -rwx------ 1 boinc boinc     36292 Nov 18 19:37 runpilot2-wrapper.sh
[2025-11-21 05:31:03] -rw-r--r-- 1 boinc boinc       100 Nov 20 21:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 05:31:03] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 21:39 run_atlas
[2025-11-21 05:31:03] -rw-r--r-- 1 boinc boinc       105 Nov 20 21:39 job.xml
[2025-11-21 05:31:03] -rw-r--r-- 2 boinc boinc 409433615 Nov 20 21:39 EVNT.47493065._000753.pool.root.1
[2025-11-21 05:31:03] -rw-r--r-- 2 boinc boinc    590097 Nov 20 21:39 input.tar.gz
[2025-11-21 05:31:03] -rw-r--r-- 2 boinc boinc     15120 Nov 20 21:39 start_atlas.sh
[2025-11-21 05:31:03] drwxrwx--x 2 boinc boinc      4096 Nov 20 21:39 shared
[2025-11-21 05:31:03] -rw-r--r-- 1 boinc boinc         0 Nov 20 21:39 boinc_setup_complete
[2025-11-21 05:31:03] -rw-r--r-- 1 boinc boinc      6448 Nov 20 21:39 init_data.xml
[2025-11-21 05:31:03] -rw-r--r-- 1 boinc boinc         0 Nov 20 21:39 boinc_lockfile
[2025-11-21 05:31:03] -rw-r--r-- 1 boinc boinc      2773 Nov 20 21:39 pandaJob.out
[2025-11-21 05:31:03] -rw------- 1 boinc boinc    989440 Nov 20 21:39 agis_schedconf.cvmfs.json
[2025-11-21 05:31:03] drwx------ 5 boinc boinc      4096 Nov 20 21:39 pilot3
[2025-11-21 05:31:03] -rw-r--r-- 1 boinc boinc       531 Nov 21 05:27 boinc_task_state.xml
[2025-11-21 05:31:03] -rw------- 1 boinc boinc 932379040 Nov 21 05:30 HITS.47493068._006178.pool.root.1
[2025-11-21 05:31:03] -rw------- 1 boinc boinc      1021 Nov 21 05:30 memory_monitor_summary.json
[2025-11-21 05:31:03] -rw------- 1 boinc boinc   1526164 Nov 21 05:30 agis_ddmendpoints.agis.ALL.json
[2025-11-21 05:31:03] -rw------- 1 boinc boinc   1160206 Nov 21 05:30 log.47493068._006178.job.log.tgz.1
[2025-11-21 05:31:03] -rw------- 1 boinc boinc      8565 Nov 21 05:30 heartbeat.json
[2025-11-21 05:31:03] -rw-r--r-- 1 boinc boinc      8192 Nov 21 05:30 boinc_mmap_file
[2025-11-21 05:31:03] -rw-r--r-- 1 boinc boinc        28 Nov 21 05:30 wrapper_checkpoint.txt
[2025-11-21 05:31:03] -rw------- 1 boinc boinc       747 Nov 21 05:31 pilotlog.txt
[2025-11-21 05:31:03] -rw------- 1 boinc boinc        95 Nov 21 05:31 pilot_heartbeat.json
[2025-11-21 05:31:03] -rw------- 1 boinc boinc   3981716 Nov 21 05:31 log.47493068._006178.job.log.1
[2025-11-21 05:31:03] -rw------- 1 boinc boinc       353 Nov 21 05:31 output.list
[2025-11-21 05:31:03] -rw-r--r-- 1 boinc boinc       620 Nov 21 05:31 runtime_log
[2025-11-21 05:31:03] -rw------- 1 boinc boinc   5160960 Nov 21 05:31 result.tar.gz
[2025-11-21 05:31:03] -rw------- 1 boinc boinc       669 Nov 21 05:31 uJqNDm4kff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmFHGKDmilYKWn.diag
[2025-11-21 05:31:03] -rw-r--r-- 1 boinc boinc      8798 Nov 21 05:31 runtime_log.err
[2025-11-21 05:31:03] -rw-r--r-- 1 boinc boinc     10509 Nov 21 05:31 stderr.txt
[2025-11-21 05:31:03] HITS file was successfully produced:
[2025-11-21 05:31:03] -rw------- 1 boinc boinc 932379040 Nov 21 05:30 shared/HITS.pool.root.1
[2025-11-21 05:31:03]  *** Contents of shared directory: ***
[2025-11-21 05:31:03] total 1316012
[2025-11-21 05:31:03] -rw-r--r-- 2 boinc boinc 409433615 Nov 20 21:39 ATLAS.root_0
[2025-11-21 05:31:03] -rw-r--r-- 2 boinc boinc    590097 Nov 20 21:39 input.tar.gz
[2025-11-21 05:31:03] -rw-r--r-- 2 boinc boinc     15120 Nov 20 21:39 start_atlas.sh
[2025-11-21 05:31:03] -rw------- 1 boinc boinc 932379040 Nov 21 05:30 HITS.pool.root.1
[2025-11-21 05:31:03] -rw------- 1 boinc boinc   5160960 Nov 21 05:31 result.tar.gz
05:31:04 (3364187): run_atlas exited; CPU time 83546.245555
05:31:04 (3364187): called boinc_finish(0)

</stderr_txt>
]]>

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