Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:04:06 (1408967): wrapper (7.7.26015): starting
20:04:06 (1408967): wrapper: running run_atlas (--nthreads 8)
[2025-11-18 20:04:06] Arguments: --nthreads 8
[2025-11-18 20:04:06] Threads: 8
[2025-11-18 20:04:06] Checking for CVMFS
[2025-11-18 20:04:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-18 20:04:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-18 20:04:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-18 20:04:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-18 20:04:08] 2.13.3.0 11883 19151 363868 153024 3 27 29333646 32935936 23221 16776704 0 97167972 99.610 105702459 34206 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-18 20:04:08] CVMFS is ok
[2025-11-18 20:04:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-18 20:04:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-18 20:04:08] Further information can be found at the LHC@home message board.
[2025-11-18 20:04:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-18 20:04:08] Checking for apptainer binary...
[2025-11-18 20:04:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-18 20:04:08] Running /usr/bin/apptainer --version
[2025-11-18 20:04:08] apptainer version 1.4.4-1.el9
[2025-11-18 20:04:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-18 20:04:08] c6-12-29-2.aglt2.org
[2025-11-18 20:04:08] apptainer works
[2025-11-18 20:04:08] Set ATHENA_PROC_NUMBER=8
[2025-11-18 20:04:08] Set ATHENA_CORE_NUMBER=8
[2025-11-18 20:04:09] Starting ATLAS job with PandaID=6891576605
[2025-11-18 20:04:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-19 23:38:24]  *** The last 200 lines of the pilot log: ***
[2025-11-19 23:38:24] 2025-11-20 04:37:33,824 | INFO     | extracted standard memory fields from prmon json
[2025-11-19 23:38:24] 2025-11-20 04:37:33,824 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-19 23:38:24] 2025-11-20 04:37:34,028 | INFO     | fitting pss+swap vs Time
[2025-11-19 23:38:24] 2025-11-20 04:37:34,054 | INFO     | sum of square deviations: 1325598319204.5178
[2025-11-19 23:38:24] 2025-11-20 04:37:34,433 | INFO     | time since job start (99142s) is within the limit (172800.0s)
[2025-11-19 23:38:24] 2025-11-20 04:37:34,491 | INFO     | sum of deviations: 4799069267665.896
[2025-11-19 23:38:24] 2025-11-20 04:37:34,492 | INFO     | mean x: 1763563918.8675292
[2025-11-19 23:38:24] 2025-11-20 04:37:34,492 | INFO     | mean y: 2948389.269254467
[2025-11-19 23:38:24] 2025-11-20 04:37:34,492 | INFO     | intersect: -6381689613.048414
[2025-11-19 23:38:24] 2025-11-20 04:37:34,553 | INFO     | chi2: 9.153110580140538
[2025-11-19 23:38:24] 2025-11-20 04:37:34,555 | INFO     | sum of square deviations: 1313385948787.0005
[2025-11-19 23:38:24] 2025-11-20 04:37:34,995 | INFO     | monitor loop #5154: job 0:6891576605 is in state 'finished'
[2025-11-19 23:38:24] 2025-11-20 04:37:34,995 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 23:38:24] 2025-11-20 04:37:35,193 | INFO     | sum of deviations: 5377208109810.974
[2025-11-19 23:38:24] 2025-11-20 04:37:35,193 | INFO     | mean x: 1763563766.3794808
[2025-11-19 23:38:24] 2025-11-20 04:37:35,193 | INFO     | mean y: 2955608.2280593324
[2025-11-19 23:38:24] 2025-11-20 04:37:35,193 | INFO     | intersect: -7217351107.785431
[2025-11-19 23:38:24] 2025-11-20 04:37:35,244 | INFO     | chi2: 5.816402001598039
[2025-11-19 23:38:24] 2025-11-20 04:37:35,244 | INFO     | current chi2=5.816402001598039 (change=36.45436760899776 %)
[2025-11-19 23:38:24] 2025-11-20 04:37:35,246 | INFO     | sum of square deviations: 1301248737024.798
[2025-11-19 23:38:24] 2025-11-20 04:37:35,944 | INFO     | sum of deviations: 5667410820946.798
[2025-11-19 23:38:24] 2025-11-20 04:37:35,945 | INFO     | mean x: 1763563613.8908865
[2025-11-19 23:38:24] 2025-11-20 04:37:35,945 | INFO     | mean y: 2959250.3738375697
[2025-11-19 23:38:24] 2025-11-20 04:37:35,945 | INFO     | intersect: -7678000757.046157
[2025-11-19 23:38:24] 2025-11-20 04:37:35,947 | INFO     | chi2: 4.5501636797407174
[2025-11-19 23:38:24] 2025-11-20 04:37:35,982 | INFO     | current chi2=4.5501636797407174 (change=21.77013077000913 %)
[2025-11-19 23:38:24] 2025-11-20 04:37:35,982 | INFO     | right removable region: 1612
[2025-11-19 23:38:24] 2025-11-20 04:37:35,984 | INFO     | sum of square deviations: 1313382119816.9958
[2025-11-19 23:38:24] 2025-11-20 04:37:36,486 | INFO     | time since job start (99144s) is within the limit (172800.0s)
[2025-11-19 23:38:24] 2025-11-20 04:37:36,808 | INFO     | sum of deviations: 4190129621535.4087
[2025-11-19 23:38:24] 2025-11-20 04:37:36,848 | INFO     | mean x: 1763564071.3794808
[2025-11-19 23:38:24] 2025-11-20 04:37:36,848 | INFO     | mean y: 2955989.873918418
[2025-11-19 23:38:24] 2025-11-20 04:37:36,848 | INFO     | intersect: -5623405099.914936
[2025-11-19 23:38:24] 2025-11-20 04:37:36,850 | INFO     | chi2: 5.69418194754346
[2025-11-19 23:38:24] 2025-11-20 04:37:36,851 | INFO     | current chi2=5.69418194754346 (change=37.78965196926496 %)
[2025-11-19 23:38:24] 2025-11-20 04:37:36,952 | INFO     | sum of square deviations: 1301241867353.4631
[2025-11-19 23:38:24] 2025-11-20 04:37:37,632 | INFO     | sum of deviations: 3949897127872.744
[2025-11-19 23:38:24] 2025-11-20 04:37:37,632 | INFO     | mean x: 1763564223.8871667
[2025-11-19 23:38:24] 2025-11-20 04:37:37,632 | INFO     | mean y: 2959005.4271543706
[2025-11-19 23:38:24] 2025-11-20 04:37:37,633 | INFO     | intersect: -5350309620.119507
[2025-11-19 23:38:24] 2025-11-20 04:37:37,635 | INFO     | chi2: 5.12808356453305
[2025-11-19 23:38:24] 2025-11-20 04:37:37,635 | INFO     | current chi2=5.12808356453305 (change=9.941698179395761 %)
[2025-11-19 23:38:24] 2025-11-20 04:37:37,635 | INFO     | left removable region: 20
[2025-11-19 23:38:24] 2025-11-20 04:37:37,658 | INFO     | sum of square deviations: 1251078799661.6885
[2025-11-19 23:38:24] 2025-11-20 04:37:37,706 | INFO     | monitor loop #5155: job 0:6891576605 is in state 'finished'
[2025-11-19 23:38:24] 2025-11-20 04:37:37,706 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 23:38:24] 2025-11-20 04:37:37,989 | INFO     | sum of deviations: 4577311318478.866
[2025-11-19 23:38:24] 2025-11-20 04:37:37,989 | INFO     | mean x: 1763564193.4120603
[2025-11-19 23:38:24] 2025-11-20 04:37:37,990 | INFO     | mean y: 2973390.766959799
[2025-11-19 23:38:24] 2025-11-20 04:37:37,990 | INFO     | intersect: -6449363860.533258
[2025-11-19 23:38:24] 2025-11-20 04:37:37,992 | INFO     | chi2: 0.3229232934115475
[2025-11-19 23:38:24] 2025-11-20 04:37:37,992 | INFO     | current memory leak: 3.66 B/s (using 1592 data points, chi2=0.32)
[2025-11-19 23:38:24] 2025-11-20 04:37:38,013 | INFO     | could have reported an average CPU frequency of 2549 MHz (57 samples)
[2025-11-19 23:38:24] 2025-11-20 04:37:38,013 | INFO     | ..............................
[2025-11-19 23:38:24] 2025-11-20 04:37:38,013 | INFO     | . Timing measurements:
[2025-11-19 23:38:24] 2025-11-20 04:37:38,014 | INFO     | . get job = 0 s
[2025-11-19 23:38:24] 2025-11-20 04:37:38,014 | INFO     | . initial setup = 6 s
[2025-11-19 23:38:24] 2025-11-20 04:37:38,014 | INFO     | . payload setup = 41 s
[2025-11-19 23:38:24] 2025-11-20 04:37:38,014 | INFO     | . stage-in = 0 s
[2025-11-19 23:38:24] 2025-11-20 04:37:38,014 | INFO     | . payload execution = 98988 s
[2025-11-19 23:38:24] 2025-11-20 04:37:38,014 | INFO     | . stage-out = 18 s
[2025-11-19 23:38:24] 2025-11-20 04:37:38,014 | INFO     | . log creation = 3 s
[2025-11-19 23:38:24] 2025-11-20 04:37:38,014 | INFO     | ..............................
[2025-11-19 23:38:24] 2025-11-20 04:37:38,523 | INFO     | time since job start (99146s) is within the limit (172800.0s)
[2025-11-19 23:38:24] 2025-11-20 04:37:39,077 | INFO     | 
[2025-11-19 23:38:24] 2025-11-20 04:37:39,078 | INFO     | job summary report
[2025-11-19 23:38:24] 2025-11-20 04:37:39,079 | INFO     | --------------------------------------------------
[2025-11-19 23:38:24] 2025-11-20 04:37:39,079 | INFO     | PanDA job id: 6891576605
[2025-11-19 23:38:24] 2025-11-20 04:37:39,079 | INFO     | task id: 47493068
[2025-11-19 23:38:24] 2025-11-20 04:37:39,079 | INFO     | errors: (none)
[2025-11-19 23:38:24] 2025-11-20 04:37:39,079 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-19 23:38:24] 2025-11-20 04:37:39,079 | INFO     | pilot state: finished 
[2025-11-19 23:38:24] 2025-11-20 04:37:39,079 | INFO     | transexitcode: 0
[2025-11-19 23:38:24] 2025-11-20 04:37:39,079 | INFO     | exeerrorcode: 0
[2025-11-19 23:38:24] 2025-11-20 04:37:39,079 | INFO     | exeerrordiag: 
[2025-11-19 23:38:24] 2025-11-20 04:37:39,079 | INFO     | exitcode: 0
[2025-11-19 23:38:24] 2025-11-20 04:37:39,079 | INFO     | exitmsg: OK
[2025-11-19 23:38:24] 2025-11-20 04:37:39,079 | INFO     | cpuconsumptiontime: 279245 s
[2025-11-19 23:38:24] 2025-11-20 04:37:39,079 | INFO     | nevents: 1000
[2025-11-19 23:38:24] 2025-11-20 04:37:39,079 | INFO     | neventsw: 0
[2025-11-19 23:38:24] 2025-11-20 04:37:39,080 | INFO     | pid: 1431231
[2025-11-19 23:38:24] 2025-11-20 04:37:39,080 | INFO     | pgrp: 1431231
[2025-11-19 23:38:24] 2025-11-20 04:37:39,080 | INFO     | corecount: 8
[2025-11-19 23:38:24] 2025-11-20 04:37:39,080 | INFO     | event service: False
[2025-11-19 23:38:24] 2025-11-20 04:37:39,080 | INFO     | sizes: {0: 2296972, 1: 2297056, 2: 2297255, 3: 2297255, 14: 2297283, 25: 2297311, 31: 2297729, 36: 2297757, 99033: 2367391, 99034: 2367390, 99054: 2376440, 99056: 
[2025-11-19 23:38:24] 2025-11-20 04:37:39,080 | INFO     | --------------------------------------------------
[2025-11-19 23:38:24] 2025-11-20 04:37:39,080 | INFO     | 
[2025-11-19 23:38:24] 2025-11-20 04:37:39,080 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-19 23:38:24] 2025-11-20 04:37:39,228 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-19 23:38:24] 2025-11-20 04:37:39,228 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-19 23:38:24] 2025-11-20 04:37:39,228 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-19 23:38:24] 2025-11-20 04:37:39,228 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-19 23:38:24] 2025-11-20 04:37:39,229 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-19 23:38:24] 2025-11-20 04:37:39,229 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-19 23:38:24] 2025-11-20 04:37:39,229 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-19 23:38:24] 2025-11-20 04:37:39,229 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-19 23:38:24] 2025-11-20 04:37:39,229 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-19 23:38:24] 2025-11-20 04:37:39,229 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-19 23:38:24] 2025-11-20 04:37:39,229 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-19 23:38:24] 2025-11-20 04:37:39,229 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-19 23:38:24] 2025-11-20 04:37:39,229 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-19 23:38:24] 2025-11-20 04:37:39,229 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-19 23:38:24] 2025-11-20 04:37:39,229 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-19 23:38:24] 2025-11-20 04:37:39,229 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-19 23:38:24] 2025-11-20 04:37:39,229 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-19 23:38:24] 2025-11-20 04:37:39,230 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-19 23:38:24] 2025-11-20 04:37:39,230 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-19 23:38:24] 2025-11-20 04:37:39,230 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-19 23:38:24] 2025-11-20 04:37:39,230 | INFO     | job 6891576605 has completed (purged errors)
[2025-11-19 23:38:24] 2025-11-20 04:37:39,230 | INFO     | overall cleanup function is called
[2025-11-19 23:38:24] 2025-11-20 04:37:40,311 | INFO     | --- collectZombieJob: --- 10, [1431231]
[2025-11-19 23:38:24] 2025-11-20 04:37:40,311 | INFO     | zombie collector waiting for pid 1431231
[2025-11-19 23:38:24] 2025-11-20 04:37:40,311 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-19 23:38:24] 2025-11-20 04:37:40,311 | INFO     | collected zombie processes
[2025-11-19 23:38:24] 2025-11-20 04:37:40,311 | INFO     | will attempt to kill all subprocesses of pid=1431231
[2025-11-19 23:38:24] 2025-11-20 04:37:43,087 | INFO     | process IDs to be killed: [1431231] (in reverse order)
[2025-11-19 23:38:24] 2025-11-20 04:37:43,442 | WARNING  | found no corresponding commands to process id(s)
[2025-11-19 23:38:24] 2025-11-20 04:37:43,443 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-19 23:38:24] 2025-11-20 04:37:43,480 | INFO     | did not find any defunct processes belonging to 1431231
[2025-11-19 23:38:24] 2025-11-20 04:37:43,497 | INFO     | did not find any defunct processes belonging to 1431231
[2025-11-19 23:38:24] 2025-11-20 04:37:43,498 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-19 23:38:24] 2025-11-20 04:37:43,499 | INFO     | ready for new job
[2025-11-19 23:38:24] 2025-11-20 04:37:43,499 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-19 23:38:24] 2025-11-20 04:37:43,506 | INFO     | ***************************************
[2025-11-19 23:38:24] 2025-11-20 04:37:43,506 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-19 23:38:24] 2025-11-20 04:37:43,506 | INFO     | ***************************************
[2025-11-19 23:38:24] 2025-11-20 04:37:43,506 | INFO     | 
[2025-11-19 23:38:24] 2025-11-20 04:37:43,512 | INFO     | architecture information:
[2025-11-19 23:38:24] 2025-11-20 04:37:43,513 | INFO     | executing command: cat /etc/os-release
[2025-11-19 23:38:24] 2025-11-20 04:37:43,555 | INFO     | cat /etc/os-release:
[2025-11-19 23:38:24] NAME="CentOS Linux"
[2025-11-19 23:38:24] VERSION="7 (Core)"
[2025-11-19 23:38:24] ID="centos"
[2025-11-19 23:38:24] ID_LIKE="rhel fedora"
[2025-11-19 23:38:24] VERSION_ID="7"
[2025-11-19 23:38:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-19 23:38:24] ANSI_COLOR="0;31"
[2025-11-19 23:38:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-19 23:38:24] HOME_URL="https://www.centos.org/"
[2025-11-19 23:38:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-19 23:38:24] 
[2025-11-19 23:38:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-19 23:38:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-19 23:38:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-19 23:38:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-19 23:38:24] 
[2025-11-19 23:38:24] 2025-11-20 04:37:43,555 | INFO     | ***************************************
[2025-11-19 23:38:24] 2025-11-20 04:37:44,060 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-19 23:38:24] 2025-11-20 04:37:44,111 | INFO     | sufficient remaining disk space (90000326656 B)
[2025-11-19 23:38:24] 2025-11-20 04:37:44,111 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-19 23:38:24] 2025-11-20 04:37:44,112 | INFO     | current server update state: UPDATING_FINAL
[2025-11-19 23:38:24] 2025-11-20 04:37:44,112 | INFO     | update_server=False
[2025-11-19 23:38:24] 2025-11-20 04:37:44,112 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-19 23:38:24] 2025-11-20 04:37:44,112 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-19 23:38:24] 2025-11-20 04:37:44,113 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-19 23:38:24] 2025-11-20 04:37:44,113 | INFO     | aborting loop
[2025-11-19 23:38:24] 2025-11-20 04:37:44,113 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-19 23:38:24] 2025-11-20 04:37:44,134 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-19 23:38:24] 2025-11-20 04:37:44,326 | INFO     | all data control threads have been joined
[2025-11-19 23:38:24] 2025-11-20 04:37:45,117 | INFO     | [job] retrieve thread has finished
[2025-11-19 23:38:24] 2025-11-20 04:37:45,123 | INFO     | [job] job monitor thread has finished
[2025-11-19 23:38:24] 2025-11-20 04:37:45,140 | INFO     | [job] queue monitor thread has finished
[2025-11-19 23:38:24] 2025-11-20 04:37:45,332 | INFO     | [data] control thread has finished
[2025-11-19 23:38:24] 2025-11-20 04:37:45,339 | INFO     | [payload] validate_pre thread has finished
[2025-11-19 23:38:24] 2025-11-20 04:37:45,357 | INFO     | [payload] execute_payloads thread has finished
[2025-11-19 23:38:24] 2025-11-20 04:37:45,357 | INFO     | [job] validate thread has finished
[2025-11-19 23:38:24] 2025-11-20 04:37:45,364 | INFO     | [job] create_data_payload thread has finished
[2025-11-19 23:38:24] 2025-11-20 04:37:45,364 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-19 23:38:24] 2025-11-20 04:37:45,383 | INFO     | all payload control threads have been joined
[2025-11-19 23:38:24] 2025-11-20 04:37:45,476 | INFO     | [data] copytool_in thread has finished
[2025-11-19 23:38:24] 2025-11-20 04:37:45,670 | INFO     | [payload] validate_post thread has finished
[2025-11-19 23:38:24] 2025-11-20 04:37:45,787 | INFO     | all job control threads have been joined
[2025-11-19 23:38:24] 2025-11-20 04:37:45,918 | INFO     | [payload] failed_post thread has finished
[2025-11-19 23:38:24] 2025-11-20 04:37:46,119 | INFO     | [data] copytool_out thread has finished
[2025-11-19 23:38:24] 2025-11-20 04:37:46,389 | INFO     | [payload] control thread has finished
[2025-11-19 23:38:24] 2025-11-20 04:37:46,793 | INFO     | [job] control thread has finished
[2025-11-19 23:38:24] 2025-11-20 04:37:48,122 | INFO     | [data] queue_monitor thread has finished
[2025-11-19 23:38:24] 2025-11-20 04:38:14,318 | INFO     | [monitor] cgroup control has ended
[2025-11-19 23:38:24] 2025-11-20 04:38:16,222 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140678035928896)>', '<ExcThread(monitor, started 140677534959360)>']
[2025-11-19 23:38:24] 2025-11-20 04:38:17,790 | INFO     | PID=1416226 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-19 23:38:24] 2025-11-20 04:38:17,791 | INFO     | .. there are 24 such processes running
[2025-11-19 23:38:24] 2025-11-20 04:38:17,792 | INFO     | found 0 job(s) in 20 queues
[2025-11-19 23:38:24] 2025-11-20 04:38:17,792 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-19 23:38:24] 2025-11-20 04:38:17,792 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-19 23:38:24] 2025-11-20 04:38:17,792 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-19 23:38:24] 2025-11-20 04:38:17,792 | INFO     | [monitor] control thread has ended
[2025-11-19 23:38:24] 2025-11-20 04:38:21,268 | INFO     | all workflow threads have been joined
[2025-11-19 23:38:24] 2025-11-20 04:38:21,268 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-19 23:38:24] 2025-11-20 04:38:21,268 | INFO     | traces error code: 0
[2025-11-19 23:38:24] 2025-11-20 04:38:21,268 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-19 23:38:24] 2025-11-20 04:38:23,602 [wrapper] ==== pilot stdout END ====
[2025-11-19 23:38:24] 2025-11-20 04:38:23,634 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-19 23:38:24] 2025-11-20 04:38:23,672 [wrapper] pilotpid: 1416226
[2025-11-19 23:38:24] 2025-11-20 04:38:23,714 [wrapper] Pilot exit status: 0
[2025-11-19 23:38:24] 2025-11-20 04:38:23,808 [wrapper] pandaids: 6891576605
[2025-11-19 23:38:24] 2025-11-20 04:38:23,900 [wrapper] cleanup supervisor_pilot 2108062 1416227
[2025-11-19 23:38:24] 2025-11-20 04:38:23,903 [wrapper] Test setup, not cleaning
[2025-11-19 23:38:24] 2025-11-20 04:38:23,907 [wrapper] apfmon messages muted
[2025-11-19 23:38:24] 2025-11-20 04:38:23,909 [wrapper] ==== wrapper stdout END ====
[2025-11-19 23:38:24] 2025-11-20 04:38:23,911 [wrapper] ==== wrapper stderr END ====
[2025-11-19 23:38:24]  *** Error codes and diagnostics ***
[2025-11-19 23:38:24]     "exeErrorCode": 0,
[2025-11-19 23:38:24]     "exeErrorDiag": "",
[2025-11-19 23:38:24]     "pilotErrorCode": 0,
[2025-11-19 23:38:24]     "pilotErrorDiag": "",
[2025-11-19 23:38:24]  *** Listing of results directory ***
[2025-11-19 23:38:24] total 1328988
[2025-11-19 23:38:24] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 11:24 pilot3.tar.gz
[2025-11-19 23:38:24] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 11:39 queuedata.json
[2025-11-19 23:38:24] -rwx------. 1 boincer umatlas     36292 Nov 18 11:40 runpilot2-wrapper.sh
[2025-11-19 23:38:24] -rw-r--r--. 1 boincer umatlas       100 Nov 18 20:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-19 23:38:24] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 18 20:04 run_atlas
[2025-11-19 23:38:24] -rw-r--r--. 1 boincer umatlas       105 Nov 18 20:04 job.xml
[2025-11-19 23:38:24] -rw-r--r--. 2 boincer umatlas 408670558 Nov 18 20:04 EVNT.47493065._000372.pool.root.1
[2025-11-19 23:38:24] -rw-r--r--. 2 boincer umatlas     15120 Nov 18 20:04 start_atlas.sh
[2025-11-19 23:38:24] drwxrwx--x. 2 boincer umatlas      4096 Nov 18 20:04 shared
[2025-11-19 23:38:24] -rw-r--r--. 2 boincer umatlas    590098 Nov 18 20:04 input.tar.gz
[2025-11-19 23:38:24] -rw-r--r--. 1 boincer umatlas         0 Nov 18 20:04 boinc_lockfile
[2025-11-19 23:38:24] -rw-r--r--. 1 boincer umatlas      2772 Nov 18 20:04 pandaJob.out
[2025-11-19 23:38:24] -rw-------. 1 boincer umatlas    992806 Nov 18 20:05 agis_schedconf.cvmfs.json
[2025-11-19 23:38:24] drwx------. 5 boincer umatlas      4096 Nov 18 20:05 pilot3
[2025-11-19 23:38:24] -rw-r--r--. 1 boincer umatlas       533 Nov 19 23:24 boinc_task_state.xml
[2025-11-19 23:38:24] -rw-r--r--. 1 boincer umatlas      6881 Nov 19 23:28 init_data.xml
[2025-11-19 23:38:24] -rw-------. 1 boincer umatlas 920287518 Nov 19 23:36 HITS.47493068._003714.pool.root.1
[2025-11-19 23:38:24] -rw-------. 1 boincer umatlas      1058 Nov 19 23:36 memory_monitor_summary.json
[2025-11-19 23:38:24] -rw-------. 1 boincer umatlas   1525063 Nov 19 23:36 agis_ddmendpoints.agis.ALL.json
[2025-11-19 23:38:24] -rw-------. 1 boincer umatlas   2526538 Nov 19 23:37 log.47493068._003714.job.log.tgz.1
[2025-11-19 23:38:24] -rw-------. 1 boincer umatlas      8622 Nov 19 23:37 heartbeat.json
[2025-11-19 23:38:24] -rw-------. 1 boincer umatlas        95 Nov 19 23:38 pilot_heartbeat.json
[2025-11-19 23:38:24] -rw-------. 1 boincer umatlas      4824 Nov 19 23:38 pilotlog.txt
[2025-11-19 23:38:24] -rw-r--r--. 1 boincer umatlas        29 Nov 19 23:38 wrapper_checkpoint.txt
[2025-11-19 23:38:24] -rw-r--r--. 1 boincer umatlas      8192 Nov 19 23:38 boinc_mmap_file
[2025-11-19 23:38:24] -rw-------. 1 boincer umatlas  11469714 Nov 19 23:38 log.47493068._003714.job.log.1
[2025-11-19 23:38:24] -rw-------. 1 boincer umatlas       353 Nov 19 23:38 output.list
[2025-11-19 23:38:24] -rw-r--r--. 1 boincer umatlas       620 Nov 19 23:38 runtime_log
[2025-11-19 23:38:24] -rw-------. 1 boincer umatlas  14018560 Nov 19 23:38 result.tar.gz
[2025-11-19 23:38:24] -rw-------. 1 boincer umatlas       662 Nov 19 23:38 s8GKDmIwdf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdrFKDmO2m7cm.diag
[2025-11-19 23:38:24] -rw-r--r--. 1 boincer umatlas      8714 Nov 19 23:38 runtime_log.err
[2025-11-19 23:38:24] -rw-r--r--. 1 boincer umatlas     21387 Nov 19 23:38 stderr.txt
[2025-11-19 23:38:24] HITS file was successfully produced:
[2025-11-19 23:38:24] -rw-------. 1 boincer umatlas 920287518 Nov 19 23:36 shared/HITS.pool.root.1
[2025-11-19 23:38:24]  *** Contents of shared directory: ***
[2025-11-19 23:38:24] total 1312112
[2025-11-19 23:38:24] -rw-r--r--. 2 boincer umatlas 408670558 Nov 18 20:04 ATLAS.root_0
[2025-11-19 23:38:24] -rw-r--r--. 2 boincer umatlas     15120 Nov 18 20:04 start_atlas.sh
[2025-11-19 23:38:24] -rw-r--r--. 2 boincer umatlas    590098 Nov 18 20:04 input.tar.gz
[2025-11-19 23:38:24] -rw-------. 1 boincer umatlas 920287518 Nov 19 23:36 HITS.pool.root.1
[2025-11-19 23:38:24] -rw-------. 1 boincer umatlas  14018560 Nov 19 23:38 result.tar.gz
23:38:26 (1408967): run_atlas exited; CPU time 282636.177663
23:38:26 (1408967): called boinc_finish(0)

</stderr_txt>
]]>

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