Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:46:26 (15500): wrapper (7.7.26015): starting
06:46:26 (15500): wrapper: running run_atlas (--nthreads 12)
[2025-11-19 06:46:26] Arguments: --nthreads 12
[2025-11-19 06:46:26] Threads: 12
[2025-11-19 06:46:26] Checking for CVMFS
[2025-11-19 06:46:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 06:46:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 06:46:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 06:46:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 06:46:36] 2.13.3.0 7171 524 93396 153033 1 89 4246373 102400000 725 130560 0 1687409 99.686 439801 107 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch DIRECT 0
[2025-11-19 06:46:36] CVMFS is ok
[2025-11-19 06:46:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 06:46:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 06:46:36] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-19 06:46:36] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-19 06:46:36] Further information can be found at the LHC@home message board.
[2025-11-19 06:46:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 06:46:36] Checking for apptainer binary...
[2025-11-19 06:46:36] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin)
[2025-11-19 06:46:36] apptainer is not installed, using version from CVMFS
[2025-11-19 06:46:36] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 06:46:37] crocidura-russula
[2025-11-19 06:46:37] apptainer works
[2025-11-19 06:46:37] Set ATHENA_PROC_NUMBER=12
[2025-11-19 06:46:37] Set ATHENA_CORE_NUMBER=12
[2025-11-19 06:46:37] Starting ATLAS job with PandaID=6891576616
[2025-11-19 06:46:37] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/virtma/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-19 06:57:26]  *** The last 200 lines of the pilot log: ***
[2025-11-19 06:57:26] 2025-11-19 06:56:53,126 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | WARNING  | wrong length of table data, x=[1763534871.0, 1763534932.0, 1763534993.0, 1763535054.0, 1763535115.0, 1763535176.0], y=[1232.0, 696987.0, 697935.0, 697935.0, 697379
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | could have reported an average CPU frequency of 2293 MHz (4 samples)
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | ..............................
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | . Timing measurements:
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | . get job = 0 s
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | . initial setup = 26 s
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | . payload setup = 3 s
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | . stage-in = 0 s
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | . payload execution = 349 s
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | . stage-out = 0 s
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | . log creation = 0 s
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | ..............................
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | executing command: tail -n 20 /virtma/boinc/slots/1/PanDA_Pilot-6891576616/pilotlog.txt
[2025-11-19 06:57:26] 2025-11-19 06:56:53,137 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-19 06:57:26] - Log from pilotlog.txt -
[2025-11-19 06:57:26] 2025-11-19 06:56:53,126 | INFO     | using path: /virtma/boinc/slots/1/PanDA_Pilot-6891576616/memory_monitor_summary.json (trf name=prmon)
[2025-11-19 06:57:26] 2025-11-19 06:56:53,126 | INFO     | extracted standard info from prmon json
[2025-11-19 06:57:26] 2025-11-19 06:56:53,126 | INFO     | extracted standard memory fields from prmon json
[2025-11-19 06:57:26] 2025-11-19 06:56:53,126 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-19 06:57:26] 2025-11-19 06:56:53,126 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-19 06:57:26] 2025-11-19 06:56:53,126 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | WARNING  | wrong length of table data, x=[1763534871.0, 1763534932.0, 1763534993.0, 1763535054.0, 1763535115.0, 1763535176.0], y=[1232.0, 696987.0, 697935.0, 697935.0, 697379
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | could have reported an average CPU frequency of 2293 MHz (4 samples)
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | ..............................
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | . Timing measurements:
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | . get job = 0 s
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | . initial setup = 26 s
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | . payload setup = 3 s
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | . stage-in = 0 s
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | . payload execution = 349 s
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | . stage-out = 0 s
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | . log creation = 0 s
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | ..............................
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | executing command: tail -n 20 /virtma/boinc/slots/1/PanDA_Pilot-6891576616/pilotlog.txt
[2025-11-19 06:57:26] 2025-11-19 06:56:53,137 | WARNING  | 
[2025-11-19 06:57:26] [begin log extracts]
[2025-11-19 06:57:26] - Log from pilotlog.txt -
[2025-11-19 06:57:26] 2025-11-19 06:56:53,126 | INFO     | using path: /virtma/boinc/slots/1/PanDA_Pilot-6891576616/memory_monitor_summary.json (trf name=prmon)
[2025-11-19 06:57:26] 2025-11-19 06:56:53,126 | INFO     | extracted standard info from prmon json
[2025-11-19 06:57:26] 2025-11-19 06:56:53,126 | INFO     | extracted standard memory fields from prmon json
[2025-11-19 06:57:26] 2025-11-19 06:56:53,126 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-19 06:57:26] 2025-11-19 06:56:53,126 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-19 06:57:26] 2025-11-19 06:56:53,126 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | WARNING  | wrong length of table data, x=[1763534871.0, 1763534932.0, 1763534993.0, 1763535054.0, 1763535115.0, 1763535176.0], y=[1232.0, 696987.0, 697935.0, 697935.0, 697379
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | could have reported an average CPU frequency of 2293 MHz (4 samples)
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | ..............................
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | . Timing measurements:
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | . get job = 0 s
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | . initial setup = 26 s
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | . payload setup = 3 s
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | . stage-in = 0 s
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | . payload execution = 349 s
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | . stage-out = 0 s
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | . log creation = 0 s
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | ..............................
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-19 06:57:26] 2025-11-19 06:56:53,127 | INFO     | executing command: tail -n 20 /virtma/boinc/slots/1/PanDA_Pilot-6891576616/pilotlog.txt
[2025-11-19 06:57:26] [end log extracts]
[2025-11-19 06:57:26] 2025-11-19 06:56:53,137 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-19 06:57:26] 2025-11-19 06:56:53,137 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-19 06:57:26] 2025-11-19 06:56:53,244 | INFO     | 
[2025-11-19 06:57:26] 2025-11-19 06:56:53,245 | INFO     | job summary report
[2025-11-19 06:57:26] 2025-11-19 06:56:53,245 | INFO     | --------------------------------------------------
[2025-11-19 06:57:26] 2025-11-19 06:56:53,245 | INFO     | PanDA job id: 6891576616
[2025-11-19 06:57:26] 2025-11-19 06:56:53,245 | INFO     | task id: 47493068
[2025-11-19 06:57:26] 2025-11-19 06:56:53,245 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-19 06:53:34,437 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-19 06:57:26] 2025-11-19 06:56:53,245 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-19 06:57:26] 2025-11-19 06:56:53,245 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-19 06:57:26] 2025-11-19 06:56:53,245 | INFO     | pilot state: failed 
[2025-11-19 06:57:26] 2025-11-19 06:56:53,245 | INFO     | transexitcode: 65
[2025-11-19 06:57:26] 2025-11-19 06:56:53,245 | INFO     | exeerrorcode: 65
[2025-11-19 06:57:26] 2025-11-19 06:56:53,245 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: "Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current
[2025-11-19 06:57:26] 2025-11-19 06:56:53,245 | INFO     | exitcode: 65
[2025-11-19 06:57:26] 2025-11-19 06:56:53,245 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: "Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algo
[2025-11-19 06:57:26] 2025-11-19 06:56:53,245 | INFO     | cpuconsumptiontime: 33 s
[2025-11-19 06:57:26] 2025-11-19 06:56:53,246 | INFO     | nevents: 0
[2025-11-19 06:57:26] 2025-11-19 06:56:53,246 | INFO     | neventsw: 0
[2025-11-19 06:57:26] 2025-11-19 06:56:53,246 | INFO     | pid: 32374
[2025-11-19 06:57:26] 2025-11-19 06:56:53,246 | INFO     | pgrp: 32374
[2025-11-19 06:57:26] 2025-11-19 06:56:53,246 | INFO     | corecount: 12
[2025-11-19 06:57:26] 2025-11-19 06:56:53,246 | INFO     | event service: False
[2025-11-19 06:57:26] 2025-11-19 06:56:53,246 | INFO     | sizes: {0: 2297199, 11: 2297199, 22: 2297227, 30: 2297517, 32: 2297545, 356: 2321388, 357: 2325868, 359: 2325868, 548: 2326062}
[2025-11-19 06:57:26] 2025-11-19 06:56:53,246 | INFO     | --------------------------------------------------
[2025-11-19 06:57:26] 2025-11-19 06:56:53,246 | INFO     | 
[2025-11-19 06:57:26] 2025-11-19 06:56:53,246 | INFO     | executing command: ls -lF /virtma/boinc/slots/1
[2025-11-19 06:57:26] 2025-11-19 06:56:53,264 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-19 06:57:26] 2025-11-19 06:56:53,264 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-19 06:57:26] 2025-11-19 06:56:53,264 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-19 06:57:26] 2025-11-19 06:56:53,264 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-19 06:57:26] 2025-11-19 06:56:53,264 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-19 06:57:26] 2025-11-19 06:56:53,264 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-19 06:57:26] 2025-11-19 06:56:53,264 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-19 06:57:26] 2025-11-19 06:56:53,264 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-19 06:57:26] 2025-11-19 06:56:53,264 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-19 06:57:26] 2025-11-19 06:56:53,264 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-19 06:57:26] 2025-11-19 06:56:53,264 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-19 06:57:26] 2025-11-19 06:56:53,264 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-19 06:57:26] 2025-11-19 06:56:53,264 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-19 06:57:26] 2025-11-19 06:56:53,264 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-19 06:57:26] 2025-11-19 06:56:53,264 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-19 06:57:26] 2025-11-19 06:56:53,264 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-19 06:57:26] 2025-11-19 06:56:53,264 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-19 06:57:26] 2025-11-19 06:56:53,264 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-19 06:57:26] 2025-11-19 06:56:53,264 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-19 06:57:26] 2025-11-19 06:56:53,264 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-19 06:57:26] 2025-11-19 06:56:53,264 | INFO     | job 6891576616 has completed (purged errors)
[2025-11-19 06:57:26] 2025-11-19 06:56:53,264 | INFO     | overall cleanup function is called
[2025-11-19 06:57:26] 2025-11-19 06:56:54,271 | INFO     | --- collectZombieJob: --- 10, [32374]
[2025-11-19 06:57:26] 2025-11-19 06:56:54,271 | INFO     | zombie collector waiting for pid 32374
[2025-11-19 06:57:26] 2025-11-19 06:56:54,272 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-19 06:57:26] 2025-11-19 06:56:54,272 | INFO     | collected zombie processes
[2025-11-19 06:57:26] 2025-11-19 06:56:54,272 | INFO     | will attempt to kill all subprocesses of pid=32374
[2025-11-19 06:57:26] 2025-11-19 06:56:54,355 | INFO     | process IDs to be killed: [32374] (in reverse order)
[2025-11-19 06:57:26] 2025-11-19 06:56:54,396 | WARNING  | found no corresponding commands to process id(s)
[2025-11-19 06:57:26] 2025-11-19 06:56:54,396 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-19 06:57:26] 2025-11-19 06:56:54,400 | INFO     | did not find any defunct processes belonging to 32374
[2025-11-19 06:57:26] 2025-11-19 06:56:54,405 | INFO     | did not find any defunct processes belonging to 32374
[2025-11-19 06:57:26] 2025-11-19 06:56:54,406 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-19 06:57:26] 2025-11-19 06:56:54,406 | INFO     | ready for new job
[2025-11-19 06:57:26] 2025-11-19 06:56:54,406 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-19 06:57:26] 2025-11-19 06:56:54,406 | INFO     | ***************************************
[2025-11-19 06:57:26] 2025-11-19 06:56:54,407 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-19 06:57:26] 2025-11-19 06:56:54,407 | INFO     | ***************************************
[2025-11-19 06:57:26] 2025-11-19 06:56:54,407 | INFO     | 
[2025-11-19 06:57:26] 2025-11-19 06:56:54,408 | INFO     | architecture information:
[2025-11-19 06:57:26] 2025-11-19 06:56:54,408 | INFO     | executing command: cat /etc/os-release
[2025-11-19 06:57:26] 2025-11-19 06:56:54,420 | INFO     | cat /etc/os-release:
[2025-11-19 06:57:26] NAME="CentOS Linux"
[2025-11-19 06:57:26] VERSION="7 (Core)"
[2025-11-19 06:57:26] ID="centos"
[2025-11-19 06:57:26] ID_LIKE="rhel fedora"
[2025-11-19 06:57:26] VERSION_ID="7"
[2025-11-19 06:57:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-19 06:57:26] ANSI_COLOR="0;31"
[2025-11-19 06:57:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-19 06:57:26] HOME_URL="https://www.centos.org/"
[2025-11-19 06:57:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-19 06:57:26] 
[2025-11-19 06:57:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-19 06:57:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-19 06:57:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-19 06:57:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-19 06:57:26] 
[2025-11-19 06:57:26] 2025-11-19 06:56:54,420 | INFO     | ***************************************
[2025-11-19 06:57:26] 2025-11-19 06:56:54,923 | INFO     | executing command: df -mP /virtma/boinc/slots/1
[2025-11-19 06:57:26] 2025-11-19 06:56:54,938 | INFO     | sufficient remaining disk space (958832574464 B)
[2025-11-19 06:57:26] 2025-11-19 06:56:54,939 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-19 06:57:26] 2025-11-19 06:56:54,939 | INFO     | current server update state: UPDATING_FINAL
[2025-11-19 06:57:26] 2025-11-19 06:56:54,939 | INFO     | update_server=False
[2025-11-19 06:57:26] 2025-11-19 06:56:54,939 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-19 06:57:26] 2025-11-19 06:56:54,939 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-19 06:57:26] 2025-11-19 06:56:54,940 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-19 06:57:26] 2025-11-19 06:56:54,940 | INFO     | aborting loop
[2025-11-19 06:57:26] 2025-11-19 06:56:54,940 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-19 06:57:26] 2025-11-19 06:56:54,948 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-19 06:57:26] 2025-11-19 06:56:55,443 | INFO     | all data control threads have been joined
[2025-11-19 06:57:26] 2025-11-19 06:56:55,680 | INFO     | all job control threads have been joined
[2025-11-19 06:57:26] 2025-11-19 06:56:55,844 | INFO     | all payload control threads have been joined
[2025-11-19 06:57:26] 2025-11-19 06:56:55,944 | INFO     | [job] retrieve thread has finished
[2025-11-19 06:57:26] 2025-11-19 06:56:55,945 | INFO     | [job] queue monitor thread has finished
[2025-11-19 06:57:26] 2025-11-19 06:56:55,945 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-19 06:57:26] 2025-11-19 06:56:55,945 | INFO     | [job] job monitor thread has finished
[2025-11-19 06:57:26] 2025-11-19 06:56:56,253 | INFO     | [payload] execute_payloads thread has finished
[2025-11-19 06:57:26] 2025-11-19 06:56:56,435 | INFO     | [payload] failed_post thread has finished
[2025-11-19 06:57:26] 2025-11-19 06:56:56,449 | INFO     | [data] control thread has finished
[2025-11-19 06:57:26] 2025-11-19 06:56:56,634 | INFO     | [data] copytool_in thread has finished
[2025-11-19 06:57:26] 2025-11-19 06:56:56,685 | INFO     | [job] control thread has finished
[2025-11-19 06:57:26] 2025-11-19 06:56:56,850 | INFO     | [payload] control thread has finished
[2025-11-19 06:57:26] 2025-11-19 06:56:56,954 | INFO     | [data] copytool_out thread has finished
[2025-11-19 06:57:26] 2025-11-19 06:56:57,293 | INFO     | [job] validate thread has finished
[2025-11-19 06:57:26] 2025-11-19 06:56:57,333 | INFO     | [job] create_data_payload thread has finished
[2025-11-19 06:57:26] 2025-11-19 06:56:57,407 | INFO     | [payload] validate_post thread has finished
[2025-11-19 06:57:26] 2025-11-19 06:56:57,421 | INFO     | [payload] validate_pre thread has finished
[2025-11-19 06:57:26] 2025-11-19 06:56:58,947 | INFO     | [data] queue_monitor thread has finished
[2025-11-19 06:57:26] 2025-11-19 06:57:10,194 | INFO     | [monitor] cgroup control has ended
[2025-11-19 06:57:26] 2025-11-19 06:57:11,524 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139875289302848)>', '<ExcThread(monitor, started 139874887767808)>']
[2025-11-19 06:57:26] 2025-11-19 06:57:16,550 | INFO     | all workflow threads have been joined
[2025-11-19 06:57:26] 2025-11-19 06:57:16,550 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-19 06:57:26] 2025-11-19 06:57:16,550 | INFO     | traces error code: 0
[2025-11-19 06:57:26] 2025-11-19 06:57:16,550 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-19 06:57:26] 2025-11-19 06:57:26,012 | INFO     | PID=19439 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-19 06:57:26] 2025-11-19 06:57:26,013 | INFO     | .. there are 3 such processes running
[2025-11-19 06:57:26] 2025-11-19 06:57:26,013 | INFO     | found 0 job(s) in 20 queues
[2025-11-19 06:57:26] 2025-11-19 06:57:26,013 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-19 06:57:26] 2025-11-19 06:57:26,013 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-19 06:57:26] 2025-11-19 06:57:26,013 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-19 06:57:26] 2025-11-19 06:57:26,013 | INFO     | [monitor] control thread has ended
[2025-11-19 06:57:26] 2025-11-19 06:57:26,062 [wrapper] ==== pilot stdout END ====
[2025-11-19 06:57:26] 2025-11-19 06:57:26,064 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-19 06:57:26] 2025-11-19 06:57:26,067 [wrapper] pilotpid: 19439
[2025-11-19 06:57:26] 2025-11-19 06:57:26,070 [wrapper] Pilot exit status: 0
[2025-11-19 06:57:26] 2025-11-19 06:57:26,079 [wrapper] pandaids: 6891576616
[2025-11-19 06:57:26] 2025-11-19 06:57:26,104 [wrapper] cleanup supervisor_pilot 19445 19440
[2025-11-19 06:57:26] 2025-11-19 06:57:26,106 [wrapper] Test setup, not cleaning
[2025-11-19 06:57:26] 2025-11-19 06:57:26,108 [wrapper] apfmon messages muted
[2025-11-19 06:57:26] 2025-11-19 06:57:26,111 [wrapper] ==== wrapper stdout END ====
[2025-11-19 06:57:26] 2025-11-19 06:57:26,113 [wrapper] ==== wrapper stderr END ====
[2025-11-19 06:57:26]  *** Error codes and diagnostics ***
[2025-11-19 06:57:26]     "exeErrorCode": 65,
[2025-11-19 06:57:26]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm: <NONE>; Current Function: unknown\"",
[2025-11-19 06:57:26]     "pilotErrorCode": 1305,
[2025-11-19 06:57:26]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm",
[2025-11-19 06:57:26]  *** Listing of results directory ***
[2025-11-19 06:57:26] total 407200
[2025-11-19 06:57:26] -rw-r--r-- 1 boinc boinc    576529 Nov 18 16:24 pilot3.tar.gz
[2025-11-19 06:57:26] -rw-r--r-- 1 boinc boinc      5112 Nov 18 16:39 queuedata.json
[2025-11-19 06:57:26] -rwx------ 1 boinc boinc     36292 Nov 18 16:41 runpilot2-wrapper.sh
[2025-11-19 06:57:26] -rw-r--r-- 1 boinc boinc       100 Nov 19 06:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-19 06:57:26] -rwxr-xr-x 1 boinc boinc      7986 Nov 19 06:46 run_atlas
[2025-11-19 06:57:26] -rw-r--r-- 1 boinc boinc       105 Nov 19 06:46 job.xml
[2025-11-19 06:57:26] -rw-r--r-- 2 boinc boinc     15120 Nov 19 06:46 start_atlas.sh
[2025-11-19 06:57:26] drwxrwx--x 2 boinc boinc        68 Nov 19 06:46 shared
[2025-11-19 06:57:26] -rw-r--r-- 2 boinc boinc    590102 Nov 19 06:46 input.tar.gz
[2025-11-19 06:57:26] -rw-r--r-- 1 boinc boinc      8916 Nov 19 06:46 init_data.xml
[2025-11-19 06:57:26] -rw-r--r-- 2 boinc boinc 412665254 Nov 19 06:46 EVNT.47493065._000373.pool.root.1
[2025-11-19 06:57:26] -rw-r--r-- 1 boinc boinc         0 Nov 19 06:46 boinc_setup_complete
[2025-11-19 06:57:26] -rw-r--r-- 1 boinc boinc         0 Nov 19 06:46 boinc_lockfile
[2025-11-19 06:57:26] -rw-r--r-- 1 boinc boinc      2773 Nov 19 06:46 pandaJob.out
[2025-11-19 06:57:26] -rw------- 1 boinc boinc    992806 Nov 19 06:46 agis_schedconf.cvmfs.json
[2025-11-19 06:57:26] -rw------- 1 boinc boinc   1525063 Nov 19 06:47 agis_ddmendpoints.agis.ALL.json
[2025-11-19 06:57:26] drwx------ 5 boinc boinc      4096 Nov 19 06:47 pilot3
[2025-11-19 06:57:26] -rw-r--r-- 1 boinc boinc       524 Nov 19 06:53 boinc_task_state.xml
[2025-11-19 06:57:26] -rw------- 1 boinc boinc      1004 Nov 19 06:53 memory_monitor_summary.json
[2025-11-19 06:57:26] -rw------- 1 boinc boinc     54398 Nov 19 06:53 log.47493068._003725.job.log.tgz.1
[2025-11-19 06:57:26] -rw------- 1 boinc boinc        95 Nov 19 06:56 pilot_heartbeat.json
[2025-11-19 06:57:26] -rw------- 1 boinc boinc      9233 Nov 19 06:56 heartbeat.json
[2025-11-19 06:57:26] -rw-r--r-- 1 boinc boinc        23 Nov 19 06:57 wrapper_checkpoint.txt
[2025-11-19 06:57:26] -rw-r--r-- 1 boinc boinc      8192 Nov 19 06:57 boinc_mmap_file
[2025-11-19 06:57:26] -rw------- 1 boinc boinc       820 Nov 19 06:57 pilotlog.txt
[2025-11-19 06:57:26] -rw------- 1 boinc boinc    144360 Nov 19 06:57 log.47493068._003725.job.log.1
[2025-11-19 06:57:26] -rw------- 1 boinc boinc       186 Nov 19 06:57 output.list
[2025-11-19 06:57:26] -rw-r--r-- 1 boinc boinc       620 Nov 19 06:57 runtime_log
[2025-11-19 06:57:26] -rw------- 1 boinc boinc    215040 Nov 19 06:57 result.tar.gz
[2025-11-19 06:57:26] -rw-r--r-- 1 boinc boinc      8548 Nov 19 06:57 runtime_log.err
[2025-11-19 06:57:26] -rw------- 1 boinc boinc       641 Nov 19 06:57 97vMDmZwdf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmqTFKDmsQ27Um.diag
[2025-11-19 06:57:26] -rw-r--r-- 1 boinc boinc     22966 Nov 19 06:57 stderr.txt
[2025-11-19 06:57:26] No HITS result produced
[2025-11-19 06:57:26]  *** Contents of shared directory: ***
[2025-11-19 06:57:26] total 403804
[2025-11-19 06:57:26] -rw-r--r-- 2 boinc boinc     15120 Nov 19 06:46 start_atlas.sh
[2025-11-19 06:57:26] -rw-r--r-- 2 boinc boinc    590102 Nov 19 06:46 input.tar.gz
[2025-11-19 06:57:26] -rw-r--r-- 2 boinc boinc 412665254 Nov 19 06:46 ATLAS.root_0
[2025-11-19 06:57:26] -rw------- 1 boinc boinc    215040 Nov 19 06:57 result.tar.gz
06:57:27 (15500): run_atlas exited; CPU time 39.639369
06:57:27 (15500): called boinc_finish(0)

</stderr_txt>
]]>

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