Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:21:49 (2165): wrapper (7.7.26015): starting
01:21:49 (2165): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 01:21:49] Arguments: --nthreads 8
[2025-11-22 01:21:49] Threads: 8
[2025-11-22 01:21:49] Checking for CVMFS
[2025-11-22 01:21:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 01:21:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 01:21:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 01:21:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 01:21:53] 2.11.2.0 31313 278709 141712 153153 0 84 16763419 25165824 4632 130560 2 126049310 99.858 84143317 3110 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-22 01:21:53] CVMFS is ok
[2025-11-22 01:21:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 01:21:53] Checking for apptainer binary...
[2025-11-22 01:21:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 01:21:53] Running /usr/bin/apptainer --version
[2025-11-22 01:21:53] apptainer version 1.3.2-1.el7
[2025-11-22 01:21:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 01:21:57] cg-vwn451.simple-grid.lan
[2025-11-22 01:21:57] apptainer works
[2025-11-22 01:21:57] Set ATHENA_PROC_NUMBER=8
[2025-11-22 01:21:57] Set ATHENA_CORE_NUMBER=8
[2025-11-22 01:21:57] Starting ATLAS job with PandaID=6891592040
[2025-11-22 01:21:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/26 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 03:19:43]  *** The last 200 lines of the pilot log: ***
[2025-11-23 03:19:43] 2025-11-23 02:18:52,263 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 03:19:43] 2025-11-23 02:18:54,234 | INFO     | time since job start (93183s) is within the limit (172800.0s)
[2025-11-23 03:19:43] 2025-11-23 02:18:54,768 | INFO     | monitor loop #6268: job 0:6891592040 is in state 'finished'
[2025-11-23 03:19:43] 2025-11-23 02:18:54,768 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 03:19:43] 2025-11-23 02:18:55,479 | INFO     | PID=5937 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-23 03:19:43] 2025-11-23 02:18:55,479 | INFO     | .. there are 9 such processes running
[2025-11-23 03:19:43] 2025-11-23 02:18:56,480 | INFO     | time since job start (93185s) is within the limit (172800.0s)
[2025-11-23 03:19:43] 2025-11-23 02:18:57,274 | INFO     | monitor loop #6269: job 0:6891592040 is in state 'finished'
[2025-11-23 03:19:43] 2025-11-23 02:18:57,274 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 03:19:43] 2025-11-23 02:18:58,490 | INFO     | time since job start (93187s) is within the limit (172800.0s)
[2025-11-23 03:19:43] 2025-11-23 02:18:59,779 | INFO     | monitor loop #6270: job 0:6891592040 is in state 'finished'
[2025-11-23 03:19:43] 2025-11-23 02:18:59,779 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 03:19:43] 2025-11-23 02:19:00,498 | INFO     | time since job start (93189s) is within the limit (172800.0s)
[2025-11-23 03:19:43] 2025-11-23 02:19:02,152 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 03:19:43] 2025-11-23 02:19:02,153 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-23 03:19:43] 2025-11-23 02:19:02,155 | INFO     | using path: /var/lib/boinc/slots/26/PanDA_Pilot-6891592040/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 03:19:43] 2025-11-23 02:19:02,156 | INFO     | extracted standard info from prmon json
[2025-11-23 03:19:43] 2025-11-23 02:19:02,157 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 03:19:43] 2025-11-23 02:19:02,157 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 03:19:43] 2025-11-23 02:19:02,200 | INFO     | fitting pss+swap vs Time
[2025-11-23 03:19:43] 2025-11-23 02:19:02,203 | INFO     | sum of square deviations: 1084659994303.9526
[2025-11-23 03:19:43] 2025-11-23 02:19:02,311 | INFO     | sum of deviations: 4072433249140.663
[2025-11-23 03:19:43] 2025-11-23 02:19:02,312 | INFO     | mean x: 1763817961.8715415
[2025-11-23 03:19:43] 2025-11-23 02:19:02,312 | INFO     | mean y: 2839391.911067194
[2025-11-23 03:19:43] 2025-11-23 02:19:02,312 | INFO     | intersect: -6619540848.052217
[2025-11-23 03:19:43] 2025-11-23 02:19:02,314 | INFO     | chi2: 24.35501325393282
[2025-11-23 03:19:43] 2025-11-23 02:19:02,316 | INFO     | sum of square deviations: 1073977908077.014
[2025-11-23 03:19:43] 2025-11-23 02:19:02,359 | INFO     | monitor loop #6271: job 0:6891592040 is in state 'finished'
[2025-11-23 03:19:43] 2025-11-23 02:19:02,359 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 03:19:43] 2025-11-23 02:19:02,415 | INFO     | sum of deviations: 4609633341140.861
[2025-11-23 03:19:43] 2025-11-23 02:19:02,415 | INFO     | mean x: 1763817809.376074
[2025-11-23 03:19:43] 2025-11-23 02:19:02,415 | INFO     | mean y: 2847059.167217449
[2025-11-23 03:19:43] 2025-11-23 02:19:02,416 | INFO     | intersect: -7567656319.58101
[2025-11-23 03:19:43] 2025-11-23 02:19:02,418 | INFO     | chi2: 20.74793727292569
[2025-11-23 03:19:43] 2025-11-23 02:19:02,418 | INFO     | current chi2=20.74793727292569 (change=14.810404508503664 %)
[2025-11-23 03:19:43] 2025-11-23 02:19:02,418 | INFO     | right removable region: 1512
[2025-11-23 03:19:43] 2025-11-23 02:19:02,420 | INFO     | sum of square deviations: 1073976638057.015
[2025-11-23 03:19:43] 2025-11-23 02:19:02,489 | INFO     | sum of deviations: 3423862260934.531
[2025-11-23 03:19:43] 2025-11-23 02:19:02,490 | INFO     | mean x: 1763818114.376074
[2025-11-23 03:19:43] 2025-11-23 02:19:02,490 | INFO     | mean y: 2848649.9814937213
[2025-11-23 03:19:43] 2025-11-23 02:19:02,490 | INFO     | intersect: -5620244127.800461
[2025-11-23 03:19:43] 2025-11-23 02:19:02,492 | INFO     | chi2: 19.42030221560784
[2025-11-23 03:19:43] 2025-11-23 02:19:02,492 | INFO     | current chi2=19.42030221560784 (change=20.26158223308759 %)
[2025-11-23 03:19:43] 2025-11-23 02:19:02,492 | INFO     | left removable region: 10
[2025-11-23 03:19:43] 2025-11-23 02:19:02,494 | INFO     | sum of square deviations: 1050722165301.5325
[2025-11-23 03:19:43] 2025-11-23 02:19:02,516 | INFO     | time since job start (93191s) is within the limit (172800.0s)
[2025-11-23 03:19:43] 2025-11-23 02:19:02,560 | INFO     | sum of deviations: 3507936191094.635
[2025-11-23 03:19:43] 2025-11-23 02:19:02,561 | INFO     | mean x: 1763818083.8861518
[2025-11-23 03:19:43] 2025-11-23 02:19:02,561 | INFO     | mean y: 2865756.5066577895
[2025-11-23 03:19:43] 2025-11-23 02:19:02,561 | INFO     | intersect: -5885809190.400737
[2025-11-23 03:19:43] 2025-11-23 02:19:02,563 | INFO     | chi2: 11.689161445767771
[2025-11-23 03:19:43] 2025-11-23 02:19:02,563 | INFO     | current memory leak: 3.34 B/s (using 1502 data points, chi2=11.69)
[2025-11-23 03:19:43] 2025-11-23 02:19:02,566 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-23 03:19:43] 2025-11-23 02:19:02,566 | INFO     | ..............................
[2025-11-23 03:19:43] 2025-11-23 02:19:02,566 | INFO     | . Timing measurements:
[2025-11-23 03:19:43] 2025-11-23 02:19:02,566 | INFO     | . get job = 0 s
[2025-11-23 03:19:43] 2025-11-23 02:19:02,566 | INFO     | . initial setup = 13 s
[2025-11-23 03:19:43] 2025-11-23 02:19:02,566 | INFO     | . payload setup = 181 s
[2025-11-23 03:19:43] 2025-11-23 02:19:02,567 | INFO     | . stage-in = 0 s
[2025-11-23 03:19:43] 2025-11-23 02:19:02,567 | INFO     | . payload execution = 92701 s
[2025-11-23 03:19:43] 2025-11-23 02:19:02,567 | INFO     | . stage-out = 6 s
[2025-11-23 03:19:43] 2025-11-23 02:19:02,567 | INFO     | . log creation = 2 s
[2025-11-23 03:19:43] 2025-11-23 02:19:02,567 | INFO     | ..............................
[2025-11-23 03:19:43] 2025-11-23 02:19:02,698 | INFO     | 
[2025-11-23 03:19:43] 2025-11-23 02:19:02,698 | INFO     | job summary report
[2025-11-23 03:19:43] 2025-11-23 02:19:02,698 | INFO     | --------------------------------------------------
[2025-11-23 03:19:43] 2025-11-23 02:19:02,698 | INFO     | PanDA job id: 6891592040
[2025-11-23 03:19:43] 2025-11-23 02:19:02,698 | INFO     | task id: 47493068
[2025-11-23 03:19:43] 2025-11-23 02:19:02,698 | INFO     | errors: (none)
[2025-11-23 03:19:43] 2025-11-23 02:19:02,698 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 03:19:43] 2025-11-23 02:19:02,699 | INFO     | pilot state: finished 
[2025-11-23 03:19:43] 2025-11-23 02:19:02,699 | INFO     | transexitcode: 0
[2025-11-23 03:19:43] 2025-11-23 02:19:02,699 | INFO     | exeerrorcode: 0
[2025-11-23 03:19:43] 2025-11-23 02:19:02,699 | INFO     | exeerrordiag: 
[2025-11-23 03:19:43] 2025-11-23 02:19:02,699 | INFO     | exitcode: 0
[2025-11-23 03:19:43] 2025-11-23 02:19:02,699 | INFO     | exitmsg: OK
[2025-11-23 03:19:43] 2025-11-23 02:19:02,699 | INFO     | cpuconsumptiontime: 340243 s
[2025-11-23 03:19:43] 2025-11-23 02:19:02,699 | INFO     | nevents: 1000
[2025-11-23 03:19:43] 2025-11-23 02:19:02,699 | INFO     | neventsw: 0
[2025-11-23 03:19:43] 2025-11-23 02:19:02,699 | INFO     | pid: 12489
[2025-11-23 03:19:43] 2025-11-23 02:19:02,700 | INFO     | pgrp: 12489
[2025-11-23 03:19:43] 2025-11-23 02:19:02,700 | INFO     | corecount: 8
[2025-11-23 03:19:43] 2025-11-23 02:19:02,700 | INFO     | event service: False
[2025-11-23 03:19:43] 2025-11-23 02:19:02,700 | INFO     | sizes: {0: 2297968, 1: 2298654, 2: 2298853, 13: 2298853, 23: 2298909, 34: 2298937, 45: 2299093, 56: 2299121, 66: 2299149, 77: 2299177, 88: 2299233, 98: 2299541, 10
[2025-11-23 03:19:43] 2025-11-23 02:19:02,700 | INFO     | --------------------------------------------------
[2025-11-23 03:19:43] 2025-11-23 02:19:02,700 | INFO     | 
[2025-11-23 03:19:43] 2025-11-23 02:19:02,700 | INFO     | executing command: ls -lF /var/lib/boinc/slots/26
[2025-11-23 03:19:43] 2025-11-23 02:19:03,193 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 03:19:43] 2025-11-23 02:19:03,194 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 03:19:43] 2025-11-23 02:19:03,194 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 03:19:43] 2025-11-23 02:19:03,194 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 03:19:43] 2025-11-23 02:19:03,194 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 03:19:43] 2025-11-23 02:19:03,194 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 03:19:43] 2025-11-23 02:19:03,194 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 03:19:43] 2025-11-23 02:19:03,194 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 03:19:43] 2025-11-23 02:19:03,194 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 03:19:43] 2025-11-23 02:19:03,194 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 03:19:43] 2025-11-23 02:19:03,195 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 03:19:43] 2025-11-23 02:19:03,195 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 03:19:43] 2025-11-23 02:19:03,195 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 03:19:43] 2025-11-23 02:19:03,195 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 03:19:43] 2025-11-23 02:19:03,195 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 03:19:43] 2025-11-23 02:19:03,195 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 03:19:43] 2025-11-23 02:19:03,195 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 03:19:43] 2025-11-23 02:19:03,195 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 03:19:43] 2025-11-23 02:19:03,196 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 03:19:43] 2025-11-23 02:19:03,196 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 03:19:43] 2025-11-23 02:19:03,196 | INFO     | job 6891592040 has completed (purged errors)
[2025-11-23 03:19:43] 2025-11-23 02:19:03,196 | INFO     | overall cleanup function is called
[2025-11-23 03:19:43] 2025-11-23 02:19:04,222 | INFO     | --- collectZombieJob: --- 10, [12489]
[2025-11-23 03:19:43] 2025-11-23 02:19:04,222 | INFO     | zombie collector waiting for pid 12489
[2025-11-23 03:19:43] 2025-11-23 02:19:04,222 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 03:19:43] 2025-11-23 02:19:04,223 | INFO     | collected zombie processes
[2025-11-23 03:19:43] 2025-11-23 02:19:04,223 | INFO     | will attempt to kill all subprocesses of pid=12489
[2025-11-23 03:19:43] 2025-11-23 02:19:04,383 | INFO     | process IDs to be killed: [12489] (in reverse order)
[2025-11-23 03:19:43] 2025-11-23 02:19:05,455 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 03:19:43] 2025-11-23 02:19:05,455 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 03:19:43] 2025-11-23 02:19:05,459 | INFO     | did not find any defunct processes belonging to 12489
[2025-11-23 03:19:43] 2025-11-23 02:19:05,462 | INFO     | did not find any defunct processes belonging to 12489
[2025-11-23 03:19:43] 2025-11-23 02:19:05,515 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 03:19:43] 2025-11-23 02:19:05,516 | INFO     | ready for new job
[2025-11-23 03:19:43] 2025-11-23 02:19:05,516 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 03:19:43] 2025-11-23 02:19:05,523 | INFO     | ***************************************
[2025-11-23 03:19:43] 2025-11-23 02:19:05,523 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 03:19:43] 2025-11-23 02:19:05,523 | INFO     | ***************************************
[2025-11-23 03:19:43] 2025-11-23 02:19:05,523 | INFO     | 
[2025-11-23 03:19:43] 2025-11-23 02:19:05,524 | INFO     | pilot is running in a VM
[2025-11-23 03:19:43] 2025-11-23 02:19:05,524 | INFO     | architecture information:
[2025-11-23 03:19:43] 2025-11-23 02:19:05,532 | INFO     | executing command: cat /etc/os-release
[2025-11-23 03:19:43] 2025-11-23 02:19:05,831 | INFO     | cat /etc/os-release:
[2025-11-23 03:19:43] NAME="CentOS Linux"
[2025-11-23 03:19:43] VERSION="7 (Core)"
[2025-11-23 03:19:43] ID="centos"
[2025-11-23 03:19:43] ID_LIKE="rhel fedora"
[2025-11-23 03:19:43] VERSION_ID="7"
[2025-11-23 03:19:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 03:19:43] ANSI_COLOR="0;31"
[2025-11-23 03:19:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 03:19:43] HOME_URL="https://www.centos.org/"
[2025-11-23 03:19:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 03:19:43] 
[2025-11-23 03:19:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 03:19:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 03:19:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 03:19:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 03:19:43] 
[2025-11-23 03:19:43] 2025-11-23 02:19:05,831 | INFO     | ***************************************
[2025-11-23 03:19:43] 2025-11-23 02:19:06,334 | INFO     | executing command: df -mP /var/lib/boinc/slots/26
[2025-11-23 03:19:43] 2025-11-23 02:19:06,551 | INFO     | sufficient remaining disk space (495143878656 B)
[2025-11-23 03:19:43] 2025-11-23 02:19:06,551 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 03:19:43] 2025-11-23 02:19:06,552 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 03:19:43] 2025-11-23 02:19:06,552 | INFO     | update_server=False
[2025-11-23 03:19:43] 2025-11-23 02:19:06,552 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 03:19:43] 2025-11-23 02:19:06,552 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 03:19:43] 2025-11-23 02:19:06,553 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 03:19:43] 2025-11-23 02:19:06,556 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 03:19:43] 2025-11-23 02:19:06,556 | INFO     | aborting loop
[2025-11-23 03:19:43] 2025-11-23 02:19:06,954 | INFO     | all job control threads have been joined
[2025-11-23 03:19:43] 2025-11-23 02:19:07,092 | INFO     | all payload control threads have been joined
[2025-11-23 03:19:43] 2025-11-23 02:19:07,313 | INFO     | all data control threads have been joined
[2025-11-23 03:19:43] 2025-11-23 02:19:07,558 | INFO     | [job] retrieve thread has finished
[2025-11-23 03:19:43] 2025-11-23 02:19:07,562 | INFO     | [job] job monitor thread has finished
[2025-11-23 03:19:43] 2025-11-23 02:19:07,647 | INFO     | [job] validate thread has finished
[2025-11-23 03:19:43] 2025-11-23 02:19:07,712 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 03:19:43] 2025-11-23 02:19:07,814 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 03:19:43] 2025-11-23 02:19:07,889 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 03:19:43] 2025-11-23 02:19:07,959 | INFO     | [job] control thread has finished
[2025-11-23 03:19:43] 2025-11-23 02:19:07,999 | INFO     | [payload] failed_post thread has finished
[2025-11-23 03:19:43] 2025-11-23 02:19:08,098 | INFO     | [payload] control thread has finished
[2025-11-23 03:19:43] 2025-11-23 02:19:08,319 | INFO     | [data] control thread has finished
[2025-11-23 03:19:43] 2025-11-23 02:19:08,560 | INFO     | [data] copytool_out thread has finished
[2025-11-23 03:19:43] 2025-11-23 02:19:08,718 | INFO     | [job] queue monitor thread has finished
[2025-11-23 03:19:43] 2025-11-23 02:19:08,744 | INFO     | [data] copytool_in thread has finished
[2025-11-23 03:19:43] 2025-11-23 02:19:08,792 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 03:19:43] 2025-11-23 02:19:08,860 | INFO     | [payload] validate_post thread has finished
[2025-11-23 03:19:43] 2025-11-23 02:19:08,954 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 03:19:43] 2025-11-23 02:19:10,561 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 03:19:43] 2025-11-23 02:19:34,172 | INFO     | [monitor] cgroup control has ended
[2025-11-23 03:19:43] 2025-11-23 02:19:34,559 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140476389082944)>', '<ExcThread(monitor, started 140475814106880)>']
[2025-11-23 03:19:43] 2025-11-23 02:19:35,686 | INFO     | PID=5937 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-23 03:19:43] 2025-11-23 02:19:35,686 | INFO     | .. there are 9 such processes running
[2025-11-23 03:19:43] 2025-11-23 02:19:35,686 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 03:19:43] 2025-11-23 02:19:35,686 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 03:19:43] 2025-11-23 02:19:35,686 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 03:19:43] 2025-11-23 02:19:35,686 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 03:19:43] 2025-11-23 02:19:35,686 | INFO     | [monitor] control thread has ended
[2025-11-23 03:19:43] 2025-11-23 02:19:39,585 | INFO     | all workflow threads have been joined
[2025-11-23 03:19:43] 2025-11-23 02:19:39,585 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 03:19:43] 2025-11-23 02:19:39,586 | INFO     | traces error code: 0
[2025-11-23 03:19:43] 2025-11-23 02:19:39,586 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 03:19:43] 2025-11-23 02:19:39,947 [wrapper] ==== pilot stdout END ====
[2025-11-23 03:19:43] 2025-11-23 02:19:40,053 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 03:19:43] 2025-11-23 02:19:40,158 [wrapper] pilotpid: 5937
[2025-11-23 03:19:43] 2025-11-23 02:19:40,270 [wrapper] Pilot exit status: 0
[2025-11-23 03:19:43] 2025-11-23 02:19:40,524 [wrapper] pandaids: 6891592040
[2025-11-23 03:19:43] 2025-11-23 02:19:41,099 [wrapper] cleanup supervisor_pilot  9753 5938
[2025-11-23 03:19:43] 2025-11-23 02:19:41,229 [wrapper] Test setup, not cleaning
[2025-11-23 03:19:43] 2025-11-23 02:19:41,304 [wrapper] apfmon messages muted
[2025-11-23 03:19:43] 2025-11-23 02:19:41,399 [wrapper] ==== wrapper stdout END ====
[2025-11-23 03:19:43] 2025-11-23 02:19:41,501 [wrapper] ==== wrapper stderr END ====
[2025-11-23 03:19:43]  *** Error codes and diagnostics ***
[2025-11-23 03:19:43]     "exeErrorCode": 0,
[2025-11-23 03:19:43]     "exeErrorDiag": "",
[2025-11-23 03:19:43]     "pilotErrorCode": 0,
[2025-11-23 03:19:43]     "pilotErrorDiag": "",
[2025-11-23 03:19:43]  *** Listing of results directory ***
[2025-11-23 03:19:43] total 1326056
[2025-11-23 03:19:43] -rw-r--r--. 1 boinc boinc    576529 Nov 18 18:59 pilot3.tar.gz
[2025-11-23 03:19:43] -rw-r--r--. 1 boinc boinc      5112 Nov 18 19:18 queuedata.json
[2025-11-23 03:19:43] -rwx------. 1 boinc boinc     36292 Nov 18 19:18 runpilot2-wrapper.sh
[2025-11-23 03:19:43] -rw-r--r--. 1 boinc boinc       100 Nov 22 01:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 03:19:43] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 01:21 run_atlas
[2025-11-23 03:19:43] -rw-r--r--. 1 boinc boinc       105 Nov 22 01:21 job.xml
[2025-11-23 03:19:43] -rw-r--r--. 1 boinc boinc      6393 Nov 22 01:21 init_data.xml
[2025-11-23 03:19:43] -rw-r--r--. 2 boinc boinc 408063486 Nov 22 01:21 EVNT.47493065._000635.pool.root.1
[2025-11-23 03:19:43] drwxrwx--x. 2 boinc boinc        68 Nov 22 01:21 shared
[2025-11-23 03:19:43] -rw-r--r--. 2 boinc boinc    590097 Nov 22 01:21 input.tar.gz
[2025-11-23 03:19:43] -rw-r--r--. 2 boinc boinc     15120 Nov 22 01:21 start_atlas.sh
[2025-11-23 03:19:43] -rw-r--r--. 1 boinc boinc         0 Nov 22 01:21 boinc_lockfile
[2025-11-23 03:19:43] -rw-r--r--. 1 boinc boinc      2773 Nov 22 01:21 pandaJob.out
[2025-11-23 03:19:43] -rw-------. 1 boinc boinc    989798 Nov 22 01:25 agis_schedconf.cvmfs.json
[2025-11-23 03:19:43] drwx------. 5 boinc boinc      4096 Nov 22 01:25 pilot3
[2025-11-23 03:19:43] -rw-r--r--. 1 boinc boinc       533 Nov 23 02:53 boinc_task_state.xml
[2025-11-23 03:19:43] -rw-------. 1 boinc boinc 915887543 Nov 23 03:15 HITS.47493068._005847.pool.root.1
[2025-11-23 03:19:43] -rw-------. 1 boinc boinc      1031 Nov 23 03:17 memory_monitor_summary.json
[2025-11-23 03:19:43] -rw-------. 1 boinc boinc   1526164 Nov 23 03:17 agis_ddmendpoints.agis.ALL.json
[2025-11-23 03:19:43] -rw-------. 1 boinc boinc   2585165 Nov 23 03:17 log.47493068._005847.job.log.tgz.1
[2025-11-23 03:19:43] -rw-------. 1 boinc boinc        95 Nov 23 03:18 pilot_heartbeat.json
[2025-11-23 03:19:43] -rw-------. 1 boinc boinc      8630 Nov 23 03:19 heartbeat.json
[2025-11-23 03:19:43] -rw-r--r--. 1 boinc boinc        29 Nov 23 03:19 wrapper_checkpoint.txt
[2025-11-23 03:19:43] -rw-r--r--. 1 boinc boinc      8192 Nov 23 03:19 boinc_mmap_file
[2025-11-23 03:19:43] -rw-------. 1 boinc boinc      4884 Nov 23 03:19 pilotlog.txt
[2025-11-23 03:19:43] -rw-------. 1 boinc boinc  12424991 Nov 23 03:19 log.47493068._005847.job.log.1
[2025-11-23 03:19:43] -rw-------. 1 boinc boinc       353 Nov 23 03:19 output.list
[2025-11-23 03:19:43] -rw-r--r--. 1 boinc boinc       620 Nov 23 03:19 runtime_log
[2025-11-23 03:19:43] -rw-------. 1 boinc boinc  15032320 Nov 23 03:19 result.tar.gz
[2025-11-23 03:19:43] -rw-r--r--. 1 boinc boinc      8717 Nov 23 03:19 runtime_log.err
[2025-11-23 03:19:43] -rw-------. 1 boinc boinc       662 Nov 23 03:19 Im6LDm9Sff8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmzfFKDm55uRym.diag
[2025-11-23 03:19:43] -rw-r--r--. 1 boinc boinc     21517 Nov 23 03:19 stderr.txt
[2025-11-23 03:19:44] HITS file was successfully produced:
[2025-11-23 03:19:44] -rw-------. 1 boinc boinc 915887543 Nov 23 03:15 shared/HITS.pool.root.1
[2025-11-23 03:19:44]  *** Contents of shared directory: ***
[2025-11-23 03:19:44] total 1308200
[2025-11-23 03:19:44] -rw-r--r--. 2 boinc boinc 408063486 Nov 22 01:21 ATLAS.root_0
[2025-11-23 03:19:44] -rw-r--r--. 2 boinc boinc    590097 Nov 22 01:21 input.tar.gz
[2025-11-23 03:19:44] -rw-r--r--. 2 boinc boinc     15120 Nov 22 01:21 start_atlas.sh
[2025-11-23 03:19:44] -rw-------. 1 boinc boinc 915887543 Nov 23 03:15 HITS.pool.root.1
[2025-11-23 03:19:44] -rw-------. 1 boinc boinc  15032320 Nov 23 03:19 result.tar.gz
03:19:45 (2165): run_atlas exited; CPU time 340746.493091
03:19:45 (2165): called boinc_finish(0)

</stderr_txt>
]]>

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