Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:33:08 (1114169): wrapper (7.7.26015): starting
23:33:08 (1114169): wrapper: running run_atlas (--nthreads 3)
[2025-11-18 23:33:08] Arguments: --nthreads 3
[2025-11-18 23:33:08] Threads: 3
[2025-11-18 23:33:08] Checking for CVMFS
[2025-11-18 23:33:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-18 23:33:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-18 23:33:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-18 23:33:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-18 23:33:09] 2.9.2.0 4099368 254 67048 153017 2 88 34166660 36864000 0 130560 0 3632873 99.962 141477 7695 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-18 23:33:09] CVMFS is ok
[2025-11-18 23:33:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-18 23:33:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-18 23:33:09] Further information can be found at the LHC@home message board.
[2025-11-18 23:33:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-18 23:33:09] Checking for apptainer binary...
[2025-11-18 23:33:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-18 23:33:09] Running /usr/bin/apptainer --version
[2025-11-18 23:33:09] apptainer version 1.4.1-1.1
[2025-11-18 23:33:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-18 23:33:09] thA335
[2025-11-18 23:33:09] apptainer works
[2025-11-18 23:33:09] Set ATHENA_PROC_NUMBER=3
[2025-11-18 23:33:09] Set ATHENA_CORE_NUMBER=3
[2025-11-18 23:33:09] Starting ATLAS job with PandaID=6891591253
[2025-11-18 23:33:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-18 23:37:27]  *** The last 200 lines of the pilot log: ***
[2025-11-18 23:37:27] 2025-11-18 22:36:38,695 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-18 23:37:27] 2025-11-18 22:36:38,695 | INFO     | current server update state: UPDATING_FINAL
[2025-11-18 23:37:27] 2025-11-18 22:36:38,695 | INFO     | update_server=False
[2025-11-18 23:37:27] 2025-11-18 22:36:38,695 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-18 23:37:27] 2025-11-18 22:36:38,696 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-18 23:37:27] 2025-11-18 22:36:38,696 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-18 23:37:27] 2025-11-18 22:36:39,281 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-18 23:37:27] 2025-11-18 22:36:39,282 | INFO     | aborting loop
[2025-11-18 23:37:27] 2025-11-18 22:36:39,303 | INFO     | all data control threads have been joined
[2025-11-18 23:37:27] 2025-11-18 22:36:39,391 | INFO     | all payload control threads have been joined
[2025-11-18 23:37:27] 2025-11-18 22:36:39,701 | INFO     | [job] retrieve thread has finished
[2025-11-18 23:37:27] 2025-11-18 22:36:39,702 | INFO     | [job] queue monitor thread has finished
[2025-11-18 23:37:27] 2025-11-18 22:36:39,728 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-18 23:37:27] 2025-11-18 22:36:39,821 | INFO     | [payload] execute_payloads thread has finished
[2025-11-18 23:37:27] 2025-11-18 22:36:40,134 | INFO     | [payload] validate_post thread has finished
[2025-11-18 23:37:27] 2025-11-18 22:36:40,184 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-18 23:37:27] 2025-11-18 22:36:40,187 | INFO     | [data] copytool_in thread has finished
[2025-11-18 23:37:27] 2025-11-18 22:36:40,287 | INFO     | [job] job monitor thread has finished
[2025-11-18 23:37:27] 2025-11-18 22:36:40,309 | INFO     | [data] control thread has finished
[2025-11-18 23:37:27] 2025-11-18 22:36:40,338 | INFO     | [job] validate thread has finished
[2025-11-18 23:37:27] 2025-11-18 22:36:40,343 | INFO     | all job control threads have been joined
[2025-11-18 23:37:27] 2025-11-18 22:36:40,397 | INFO     | [payload] control thread has finished
[2025-11-18 23:37:27] 2025-11-18 22:36:40,411 | INFO     | [job] create_data_payload thread has finished
[2025-11-18 23:37:27] 2025-11-18 22:36:40,475 | INFO     | [payload] validate_pre thread has finished
[2025-11-18 23:37:27] 2025-11-18 22:36:40,703 | INFO     | [payload] failed_post thread has finished
[2025-11-18 23:37:27] 2025-11-18 22:36:41,349 | INFO     | [job] control thread has finished
[2025-11-18 23:37:27] 2025-11-18 22:36:42,191 | INFO     | [data] copytool_out thread has finished
[2025-11-18 23:37:27] 2025-11-18 22:36:42,702 | INFO     | [data] queue_monitor thread has finished
[2025-11-18 23:37:27] 2025-11-18 22:37:09,603 | INFO     | PID=1117900 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-18 23:37:27] 2025-11-18 22:37:09,603 | INFO     | found 0 job(s) in 20 queues
[2025-11-18 23:37:27] 2025-11-18 22:37:09,603 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-18 23:37:27] 2025-11-18 22:37:09,603 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-18 23:37:27] 2025-11-18 22:37:20,647 | INFO     | [monitor] cgroup control has ended
[2025-11-18 23:37:27] 2025-11-18 22:37:22,253 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139660151428928)>', '<ExcThread(monitor, started 139659468314368)>']
[2025-11-18 23:37:27] 2025-11-18 22:37:22,672 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-18 23:37:27] 2025-11-18 22:37:22,672 | INFO     | [monitor] control thread has ended
[2025-11-18 23:37:27] 2025-11-18 22:37:27,255 | INFO     | all workflow threads have been joined
[2025-11-18 23:37:27] 2025-11-18 22:37:27,255 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-18 23:37:27] 2025-11-18 22:37:27,256 | INFO     | traces error code: 0
[2025-11-18 23:37:27] 2025-11-18 22:37:27,256 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-18 23:37:27] 2025-11-18 22:37:27,301 [wrapper] ==== pilot stdout END ====
[2025-11-18 23:37:27] 2025-11-18 22:37:27,305 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-18 23:37:27] 2025-11-18 22:37:27,308 [wrapper] pilotpid: 1117900
[2025-11-18 23:37:27] 2025-11-18 22:37:27,311 [wrapper] Pilot exit status: 0
[2025-11-18 23:37:27] 2025-11-18 22:37:27,318 [wrapper] pandaids: 6891591253
[2025-11-18 23:37:27] 2025-11-18 22:37:27,334 [wrapper] cleanup supervisor_pilot 1117906 1117901
[2025-11-18 23:37:27] 2025-11-18 22:37:27,337 [wrapper] Test setup, not cleaning
[2025-11-18 23:37:27] 2025-11-18 22:37:27,339 [wrapper] apfmon messages muted
[2025-11-18 23:37:27] 2025-11-18 22:37:27,342 [wrapper] ==== wrapper stdout END ====
[2025-11-18 23:37:27] 2025-11-18 22:37:27,344 [wrapper] ==== wrapper stderr END ====
[2025-11-18 23:37:27]  *** Error codes and diagnostics ***
[2025-11-18 23:37:27]     "exeErrorCode": 65,
[2025-11-18 23:37:27]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-18 23:37:27]     "pilotErrorCode": 1305,
[2025-11-18 23:37:27]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-18 23:37:27]  *** Listing of results directory ***
[2025-11-18 23:37:27] total 403032
[2025-11-18 23:37:27] -rw-r--r-- 1 boinc boinc    576529 Nov 18 18:59 pilot3.tar.gz
[2025-11-18 23:37:27] -rwx------ 1 boinc boinc     36292 Nov 18 19:09 runpilot2-wrapper.sh
[2025-11-18 23:37:27] -rw-r--r-- 1 boinc boinc      5112 Nov 18 19:09 queuedata.json
[2025-11-18 23:37:27] -rw-r--r-- 1 boinc boinc       100 Nov 18 23:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-18 23:37:27] -rwxr-xr-x 1 boinc boinc      7986 Nov 18 23:33 run_atlas
[2025-11-18 23:37:27] -rw-r--r-- 1 boinc boinc       105 Nov 18 23:33 job.xml
[2025-11-18 23:37:27] -rw-r--r-- 2 boinc boinc 408496264 Nov 18 23:33 EVNT.47493065._000619.pool.root.1
[2025-11-18 23:37:27] -rw-r--r-- 2 boinc boinc    590089 Nov 18 23:33 input.tar.gz
[2025-11-18 23:37:27] -rw-r--r-- 2 boinc boinc     15120 Nov 18 23:33 start_atlas.sh
[2025-11-18 23:37:27] drwxrwx--x 2 boinc boinc      4096 Nov 18 23:33 shared
[2025-11-18 23:37:27] -rw-r--r-- 1 boinc boinc         0 Nov 18 23:33 boinc_setup_complete
[2025-11-18 23:37:27] -rw-r--r-- 1 boinc boinc      6193 Nov 18 23:33 init_data.xml
[2025-11-18 23:37:27] -rw-r--r-- 1 boinc boinc         0 Nov 18 23:33 boinc_lockfile
[2025-11-18 23:37:27] -rw-r--r-- 1 boinc boinc      2770 Nov 18 23:33 pandaJob.out
[2025-11-18 23:37:27] -rw------- 1 boinc boinc    992790 Nov 18 23:33 agis_schedconf.cvmfs.json
[2025-11-18 23:37:27] -rw------- 1 boinc boinc   1525063 Nov 18 23:33 agis_ddmendpoints.agis.ALL.json
[2025-11-18 23:37:27] drwx------ 5 boinc boinc      4096 Nov 18 23:33 pilot3
[2025-11-18 23:37:27] -rw-r--r-- 1 boinc boinc       523 Nov 18 23:34 boinc_task_state.xml
[2025-11-18 23:37:27] -rw------- 1 boinc boinc       955 Nov 18 23:34 memory_monitor_summary.json
[2025-11-18 23:37:27] -rw------- 1 boinc boinc     56174 Nov 18 23:34 log.47493068._005681.job.log.tgz.1
[2025-11-18 23:37:27] -rw------- 1 boinc boinc        95 Nov 18 23:36 pilot_heartbeat.json
[2025-11-18 23:37:27] -rw------- 1 boinc boinc      8397 Nov 18 23:36 heartbeat.json
[2025-11-18 23:37:27] -rw-r--r-- 1 boinc boinc      8192 Nov 18 23:37 boinc_mmap_file
[2025-11-18 23:37:27] -rw-r--r-- 1 boinc boinc        23 Nov 18 23:37 wrapper_checkpoint.txt
[2025-11-18 23:37:27] -rw------- 1 boinc boinc      4752 Nov 18 23:37 pilotlog.txt
[2025-11-18 23:37:27] -rw------- 1 boinc boinc     93630 Nov 18 23:37 log.47493068._005681.job.log.1
[2025-11-18 23:37:27] -rw------- 1 boinc boinc       186 Nov 18 23:37 output.list
[2025-11-18 23:37:27] -rw-r--r-- 1 boinc boinc       620 Nov 18 23:37 runtime_log
[2025-11-18 23:37:27] -rw------- 1 boinc boinc    174080 Nov 18 23:37 result.tar.gz
[2025-11-18 23:37:27] -rw-r--r-- 1 boinc boinc      8624 Nov 18 23:37 runtime_log.err
[2025-11-18 23:37:27] -rw------- 1 boinc boinc       649 Nov 18 23:37 mMOMDmKKff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm6BGKDmkdZc6m.diag
[2025-11-18 23:37:27] -rw-r--r-- 1 boinc boinc      8019 Nov 18 23:37 stderr.txt
[2025-11-18 23:37:27] No HITS result produced
[2025-11-18 23:37:27]  *** Contents of shared directory: ***
[2025-11-18 23:37:27] total 399696
[2025-11-18 23:37:27] -rw-r--r-- 2 boinc boinc 408496264 Nov 18 23:33 ATLAS.root_0
[2025-11-18 23:37:27] -rw-r--r-- 2 boinc boinc    590089 Nov 18 23:33 input.tar.gz
[2025-11-18 23:37:27] -rw-r--r-- 2 boinc boinc     15120 Nov 18 23:33 start_atlas.sh
[2025-11-18 23:37:27] -rw------- 1 boinc boinc    174080 Nov 18 23:37 result.tar.gz
23:37:29 (1114169): run_atlas exited; CPU time 31.868042
23:37:29 (1114169): called boinc_finish(0)

</stderr_txt>
]]>

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