Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:34:39 (30912): wrapper (7.7.26015): starting
01:34:39 (30912): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 01:34:39] Arguments: --nthreads 8
[2025-11-22 01:34:39] Threads: 8
[2025-11-22 01:34:39] Checking for CVMFS
[2025-11-22 01:34:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 01:34:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 01:34:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 01:34:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 01:34:42] 2.11.2.0 12000 216056 137164 153153 1 84 16459697 25165824 4632 130560 2 104677230 99.908 41035786 3262 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-22 01:34:42] CVMFS is ok
[2025-11-22 01:34:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 01:34:42] Checking for apptainer binary...
[2025-11-22 01:34:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 01:34:42] Running /usr/bin/apptainer --version
[2025-11-22 01:34:42] apptainer version 1.3.2-1.el7
[2025-11-22 01:34:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 01:35:02] cg-vwn246.simple-grid.lan
[2025-11-22 01:35:02] apptainer works
[2025-11-22 01:35:02] Set ATHENA_PROC_NUMBER=8
[2025-11-22 01:35:02] Set ATHENA_CORE_NUMBER=8
[2025-11-22 01:35:02] Starting ATLAS job with PandaID=6891590357
[2025-11-22 01:35:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 03:15:54]  *** The last 200 lines of the pilot log: ***
[2025-11-23 03:15:54] 2025-11-23 02:14:36,870 | INFO     | time since job start (92133s) is within the limit (172800.0s)
[2025-11-23 03:15:54] 2025-11-23 02:14:38,879 | INFO     | time since job start (92135s) is within the limit (172800.0s)
[2025-11-23 03:15:54] 2025-11-23 02:14:39,106 | INFO     | monitor loop #6208: job 0:6891590357 is in state 'finished'
[2025-11-23 03:15:54] 2025-11-23 02:14:39,106 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 03:15:54] 2025-11-23 02:14:40,886 | INFO     | time since job start (92137s) is within the limit (172800.0s)
[2025-11-23 03:15:54] 2025-11-23 02:14:41,617 | INFO     | monitor loop #6209: job 0:6891590357 is in state 'finished'
[2025-11-23 03:15:54] 2025-11-23 02:14:41,617 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 03:15:54] 2025-11-23 02:14:42,893 | INFO     | time since job start (92139s) is within the limit (172800.0s)
[2025-11-23 03:15:54] 2025-11-23 02:14:44,131 | INFO     | monitor loop #6210: job 0:6891590357 is in state 'finished'
[2025-11-23 03:15:54] 2025-11-23 02:14:44,131 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 03:15:54] 2025-11-23 02:14:44,904 | INFO     | time since job start (92141s) is within the limit (172800.0s)
[2025-11-23 03:15:54] 2025-11-23 02:14:46,634 | INFO     | monitor loop #6211: job 0:6891590357 is in state 'finished'
[2025-11-23 03:15:54] 2025-11-23 02:14:46,634 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 03:15:54] 2025-11-23 02:14:46,913 | INFO     | time since job start (92143s) is within the limit (172800.0s)
[2025-11-23 03:15:54] 2025-11-23 02:14:47,362 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 03:15:54] 2025-11-23 02:14:47,363 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-23 03:15:54] 2025-11-23 02:14:47,365 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6891590357/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 03:15:54] 2025-11-23 02:14:47,366 | INFO     | extracted standard info from prmon json
[2025-11-23 03:15:54] 2025-11-23 02:14:47,366 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 03:15:54] 2025-11-23 02:14:47,366 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 03:15:54] 2025-11-23 02:14:47,396 | INFO     | fitting pss+swap vs Time
[2025-11-23 03:15:54] 2025-11-23 02:14:47,399 | INFO     | sum of square deviations: 1048626354430.4397
[2025-11-23 03:15:54] 2025-11-23 02:14:47,470 | INFO     | sum of deviations: 3608464344406.4995
[2025-11-23 03:15:54] 2025-11-23 02:14:47,471 | INFO     | mean x: 1763818228.33511
[2025-11-23 03:15:54] 2025-11-23 02:14:47,471 | INFO     | mean y: 2845334.810126582
[2025-11-23 03:15:54] 2025-11-23 02:14:47,471 | INFO     | intersect: -6066690453.672371
[2025-11-23 03:15:54] 2025-11-23 02:14:47,473 | INFO     | chi2: 21.721983608167427
[2025-11-23 03:15:54] 2025-11-23 02:14:47,475 | INFO     | sum of square deviations: 1038182565161.4968
[2025-11-23 03:15:54] 2025-11-23 02:14:47,539 | INFO     | sum of deviations: 4124028720170.5527
[2025-11-23 03:15:54] 2025-11-23 02:14:47,539 | INFO     | mean x: 1763818075.8395722
[2025-11-23 03:15:54] 2025-11-23 02:14:47,539 | INFO     | mean y: 2852861.064839572
[2025-11-23 03:15:54] 2025-11-23 02:14:47,540 | INFO     | intersect: -7003657020.736951
[2025-11-23 03:15:54] 2025-11-23 02:14:47,541 | INFO     | chi2: 18.267582400785344
[2025-11-23 03:15:54] 2025-11-23 02:14:47,542 | INFO     | current chi2=18.267582400785344 (change=15.902788942733734 %)
[2025-11-23 03:15:54] 2025-11-23 02:14:47,542 | INFO     | right removable region: 1495
[2025-11-23 03:15:54] 2025-11-23 02:14:47,544 | INFO     | sum of square deviations: 1038181342721.4968
[2025-11-23 03:15:54] 2025-11-23 02:14:47,611 | INFO     | sum of deviations: 2976410405513.4966
[2025-11-23 03:15:54] 2025-11-23 02:14:47,611 | INFO     | mean x: 1763818380.8395722
[2025-11-23 03:15:54] 2025-11-23 02:14:47,611 | INFO     | mean y: 2854562.7145721926
[2025-11-23 03:15:54] 2025-11-23 02:14:47,612 | INFO     | intersect: -5053918436.504311
[2025-11-23 03:15:54] 2025-11-23 02:14:47,613 | INFO     | chi2: 17.03131268325219
[2025-11-23 03:15:54] 2025-11-23 02:14:47,614 | INFO     | current chi2=17.03131268325219 (change=21.594118702637978 %)
[2025-11-23 03:15:54] 2025-11-23 02:14:47,614 | INFO     | left removable region: 10
[2025-11-23 03:15:54] 2025-11-23 02:14:47,616 | INFO     | sum of square deviations: 1015448387545.6208
[2025-11-23 03:15:54] 2025-11-23 02:14:47,682 | INFO     | sum of deviations: 3053822808371.4004
[2025-11-23 03:15:54] 2025-11-23 02:14:47,683 | INFO     | mean x: 1763818350.349495
[2025-11-23 03:15:54] 2025-11-23 02:14:47,683 | INFO     | mean y: 2871529.2053872054
[2025-11-23 03:15:54] 2025-11-23 02:14:47,683 | INFO     | intersect: -5301572078.352473
[2025-11-23 03:15:54] 2025-11-23 02:14:47,685 | INFO     | chi2: 9.648372679532244
[2025-11-23 03:15:54] 2025-11-23 02:14:47,685 | INFO     | current memory leak: 3.01 B/s (using 1485 data points, chi2=9.65)
[2025-11-23 03:15:54] 2025-11-23 02:14:47,687 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-23 03:15:54] 2025-11-23 02:14:47,688 | INFO     | ..............................
[2025-11-23 03:15:54] 2025-11-23 02:14:47,692 | INFO     | . Timing measurements:
[2025-11-23 03:15:54] 2025-11-23 02:14:47,692 | INFO     | . get job = 0 s
[2025-11-23 03:15:54] 2025-11-23 02:14:47,692 | INFO     | . initial setup = 15 s
[2025-11-23 03:15:54] 2025-11-23 02:14:47,692 | INFO     | . payload setup = 174 s
[2025-11-23 03:15:54] 2025-11-23 02:14:47,692 | INFO     | . stage-in = 0 s
[2025-11-23 03:15:54] 2025-11-23 02:14:47,692 | INFO     | . payload execution = 91656 s
[2025-11-23 03:15:54] 2025-11-23 02:14:47,692 | INFO     | . stage-out = 5 s
[2025-11-23 03:15:54] 2025-11-23 02:14:47,693 | INFO     | . log creation = 2 s
[2025-11-23 03:15:54] 2025-11-23 02:14:47,693 | INFO     | ..............................
[2025-11-23 03:15:54] 2025-11-23 02:14:47,872 | INFO     | 
[2025-11-23 03:15:54] 2025-11-23 02:14:47,872 | INFO     | job summary report
[2025-11-23 03:15:54] 2025-11-23 02:14:47,872 | INFO     | --------------------------------------------------
[2025-11-23 03:15:54] 2025-11-23 02:14:47,872 | INFO     | PanDA job id: 6891590357
[2025-11-23 03:15:54] 2025-11-23 02:14:47,873 | INFO     | task id: 47493068
[2025-11-23 03:15:54] 2025-11-23 02:14:47,873 | INFO     | errors: (none)
[2025-11-23 03:15:54] 2025-11-23 02:14:47,873 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 03:15:54] 2025-11-23 02:14:47,873 | INFO     | pilot state: finished 
[2025-11-23 03:15:54] 2025-11-23 02:14:47,873 | INFO     | transexitcode: 0
[2025-11-23 03:15:54] 2025-11-23 02:14:47,873 | INFO     | exeerrorcode: 0
[2025-11-23 03:15:54] 2025-11-23 02:14:47,873 | INFO     | exeerrordiag: 
[2025-11-23 03:15:54] 2025-11-23 02:14:47,873 | INFO     | exitcode: 0
[2025-11-23 03:15:54] 2025-11-23 02:14:47,873 | INFO     | exitmsg: OK
[2025-11-23 03:15:54] 2025-11-23 02:14:47,873 | INFO     | cpuconsumptiontime: 338575 s
[2025-11-23 03:15:54] 2025-11-23 02:14:47,874 | INFO     | nevents: 1000
[2025-11-23 03:15:54] 2025-11-23 02:14:47,874 | INFO     | neventsw: 0
[2025-11-23 03:15:54] 2025-11-23 02:14:47,874 | INFO     | pid: 8872
[2025-11-23 03:15:54] 2025-11-23 02:14:47,874 | INFO     | pgrp: 8872
[2025-11-23 03:15:54] 2025-11-23 02:14:47,874 | INFO     | corecount: 8
[2025-11-23 03:15:54] 2025-11-23 02:14:47,874 | INFO     | event service: False
[2025-11-23 03:15:54] 2025-11-23 02:14:47,874 | INFO     | sizes: {0: 2297968, 1: 2298653, 2: 2298852, 13: 2298852, 23: 2298908, 34: 2298936, 45: 2299092, 56: 2299120, 66: 2299148, 77: 2299176, 88: 2299232, 99: 2299540, 10
[2025-11-23 03:15:54] 2025-11-23 02:14:47,874 | INFO     | --------------------------------------------------
[2025-11-23 03:15:54] 2025-11-23 02:14:47,874 | INFO     | 
[2025-11-23 03:15:54] 2025-11-23 02:14:47,874 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-23 03:15:54] 2025-11-23 02:14:48,242 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 03:15:54] 2025-11-23 02:14:48,242 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 03:15:54] 2025-11-23 02:14:48,242 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 03:15:54] 2025-11-23 02:14:48,242 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 03:15:54] 2025-11-23 02:14:48,242 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 03:15:54] 2025-11-23 02:14:48,243 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 03:15:54] 2025-11-23 02:14:48,243 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 03:15:54] 2025-11-23 02:14:48,243 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 03:15:54] 2025-11-23 02:14:48,243 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 03:15:54] 2025-11-23 02:14:48,243 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 03:15:54] 2025-11-23 02:14:48,243 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 03:15:54] 2025-11-23 02:14:48,243 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 03:15:54] 2025-11-23 02:14:48,243 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 03:15:54] 2025-11-23 02:14:48,243 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 03:15:54] 2025-11-23 02:14:48,243 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 03:15:54] 2025-11-23 02:14:48,243 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 03:15:54] 2025-11-23 02:14:48,244 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 03:15:54] 2025-11-23 02:14:48,244 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 03:15:54] 2025-11-23 02:14:48,244 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 03:15:54] 2025-11-23 02:14:48,244 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 03:15:54] 2025-11-23 02:14:48,244 | INFO     | job 6891590357 has completed (purged errors)
[2025-11-23 03:15:54] 2025-11-23 02:14:48,244 | INFO     | overall cleanup function is called
[2025-11-23 03:15:54] 2025-11-23 02:14:49,263 | INFO     | --- collectZombieJob: --- 10, [8872]
[2025-11-23 03:15:54] 2025-11-23 02:14:49,263 | INFO     | zombie collector waiting for pid 8872
[2025-11-23 03:15:54] 2025-11-23 02:14:49,263 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 03:15:54] 2025-11-23 02:14:49,263 | INFO     | collected zombie processes
[2025-11-23 03:15:54] 2025-11-23 02:14:49,264 | INFO     | will attempt to kill all subprocesses of pid=8872
[2025-11-23 03:15:54] 2025-11-23 02:14:49,371 | INFO     | process IDs to be killed: [8872] (in reverse order)
[2025-11-23 03:15:54] 2025-11-23 02:14:50,467 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 03:15:54] 2025-11-23 02:14:50,468 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 03:15:54] 2025-11-23 02:14:50,471 | INFO     | did not find any defunct processes belonging to 8872
[2025-11-23 03:15:54] 2025-11-23 02:14:50,474 | INFO     | did not find any defunct processes belonging to 8872
[2025-11-23 03:15:54] 2025-11-23 02:14:50,529 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 03:15:54] 2025-11-23 02:14:50,530 | INFO     | ready for new job
[2025-11-23 03:15:54] 2025-11-23 02:14:50,530 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 03:15:54] 2025-11-23 02:14:50,536 | INFO     | ***************************************
[2025-11-23 03:15:54] 2025-11-23 02:14:50,537 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 03:15:54] 2025-11-23 02:14:50,537 | INFO     | ***************************************
[2025-11-23 03:15:54] 2025-11-23 02:14:50,537 | INFO     | 
[2025-11-23 03:15:54] 2025-11-23 02:14:50,538 | INFO     | pilot is running in a VM
[2025-11-23 03:15:54] 2025-11-23 02:14:50,538 | INFO     | architecture information:
[2025-11-23 03:15:54] 2025-11-23 02:14:50,550 | INFO     | executing command: cat /etc/os-release
[2025-11-23 03:15:54] 2025-11-23 02:14:50,721 | INFO     | cat /etc/os-release:
[2025-11-23 03:15:54] NAME="CentOS Linux"
[2025-11-23 03:15:54] VERSION="7 (Core)"
[2025-11-23 03:15:54] ID="centos"
[2025-11-23 03:15:54] ID_LIKE="rhel fedora"
[2025-11-23 03:15:54] VERSION_ID="7"
[2025-11-23 03:15:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 03:15:54] ANSI_COLOR="0;31"
[2025-11-23 03:15:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 03:15:54] HOME_URL="https://www.centos.org/"
[2025-11-23 03:15:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 03:15:54] 
[2025-11-23 03:15:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 03:15:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 03:15:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 03:15:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 03:15:54] 
[2025-11-23 03:15:54] 2025-11-23 02:14:50,722 | INFO     | ***************************************
[2025-11-23 03:15:54] 2025-11-23 02:14:51,225 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-23 03:15:54] 2025-11-23 02:14:51,465 | INFO     | sufficient remaining disk space (495274950656 B)
[2025-11-23 03:15:54] 2025-11-23 02:14:51,465 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 03:15:54] 2025-11-23 02:14:51,465 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 03:15:54] 2025-11-23 02:14:51,466 | INFO     | update_server=False
[2025-11-23 03:15:54] 2025-11-23 02:14:51,466 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 03:15:54] 2025-11-23 02:14:51,655 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 03:15:54] 2025-11-23 02:14:51,655 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 03:15:54] 2025-11-23 02:14:51,655 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 03:15:54] 2025-11-23 02:14:51,656 | INFO     | will abort loop
[2025-11-23 03:15:54] 2025-11-23 02:14:51,724 | INFO     | all data control threads have been joined
[2025-11-23 03:15:54] 2025-11-23 02:14:51,765 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 03:15:54] 2025-11-23 02:14:51,799 | INFO     | all job control threads have been joined
[2025-11-23 03:15:54] 2025-11-23 02:14:52,026 | INFO     | all payload control threads have been joined
[2025-11-23 03:15:54] 2025-11-23 02:14:52,472 | INFO     | [job] retrieve thread has finished
[2025-11-23 03:15:54] 2025-11-23 02:14:52,661 | INFO     | [job] job monitor thread has finished
[2025-11-23 03:15:54] 2025-11-23 02:14:52,730 | INFO     | [data] control thread has finished
[2025-11-23 03:15:54] 2025-11-23 02:14:52,741 | INFO     | [payload] failed_post thread has finished
[2025-11-23 03:15:54] 2025-11-23 02:14:52,748 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 03:15:54] 2025-11-23 02:14:52,805 | INFO     | [job] control thread has finished
[2025-11-23 03:15:54] 2025-11-23 02:14:52,810 | INFO     | [data] copytool_in thread has finished
[2025-11-23 03:15:54] 2025-11-23 02:14:52,890 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 03:15:54] 2025-11-23 02:14:52,989 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 03:15:54] 2025-11-23 02:14:53,032 | INFO     | [payload] control thread has finished
[2025-11-23 03:15:54] 2025-11-23 02:14:53,365 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 03:15:54] 2025-11-23 02:14:53,445 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 03:15:54] 2025-11-23 02:14:53,511 | INFO     | [job] validate thread has finished
[2025-11-23 03:15:54] 2025-11-23 02:14:53,547 | INFO     | [payload] validate_post thread has finished
[2025-11-23 03:15:54] 2025-11-23 02:14:53,771 | INFO     | [data] copytool_out thread has finished
[2025-11-23 03:15:54] 2025-11-23 02:14:53,794 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 03:15:54] 2025-11-23 02:14:53,896 | INFO     | [job] queue monitor thread has finished
[2025-11-23 03:15:54] 2025-11-23 02:14:57,805 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 03:15:54] 2025-11-23 02:15:20,144 | INFO     | PID=2301 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-23 03:15:54] 2025-11-23 02:15:20,145 | INFO     | .. there are 9 such processes running
[2025-11-23 03:15:54] 2025-11-23 02:15:20,146 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 03:15:54] 2025-11-23 02:15:20,146 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 03:15:54] 2025-11-23 02:15:20,146 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 03:15:54] 2025-11-23 02:15:43,388 | INFO     | [monitor] cgroup control has ended
[2025-11-23 03:15:54] 2025-11-23 02:15:45,499 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140398554404672)>', '<ExcThread(monitor, started 140397967824640)>']
[2025-11-23 03:15:54] 2025-11-23 02:15:46,305 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 03:15:54] 2025-11-23 02:15:46,305 | INFO     | [monitor] control thread has ended
[2025-11-23 03:15:54] 2025-11-23 02:15:50,525 | INFO     | all workflow threads have been joined
[2025-11-23 03:15:54] 2025-11-23 02:15:50,525 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 03:15:54] 2025-11-23 02:15:50,526 | INFO     | traces error code: 0
[2025-11-23 03:15:54] 2025-11-23 02:15:50,526 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 03:15:54] 2025-11-23 02:15:50,828 [wrapper] ==== pilot stdout END ====
[2025-11-23 03:15:54] 2025-11-23 02:15:50,835 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 03:15:54] 2025-11-23 02:15:50,838 [wrapper] pilotpid: 2301
[2025-11-23 03:15:54] 2025-11-23 02:15:50,841 [wrapper] Pilot exit status: 0
[2025-11-23 03:15:54] 2025-11-23 02:15:51,200 [wrapper] pandaids: 6891590357
[2025-11-23 03:15:54] 2025-11-23 02:15:51,968 [wrapper] cleanup supervisor_pilot 14592 2302
[2025-11-23 03:15:54] 2025-11-23 02:15:51,987 [wrapper] Test setup, not cleaning
[2025-11-23 03:15:54] 2025-11-23 02:15:51,998 [wrapper] apfmon messages muted
[2025-11-23 03:15:54] 2025-11-23 02:15:52,002 [wrapper] ==== wrapper stdout END ====
[2025-11-23 03:15:54] 2025-11-23 02:15:52,006 [wrapper] ==== wrapper stderr END ====
[2025-11-23 03:15:54]  *** Error codes and diagnostics ***
[2025-11-23 03:15:54]     "exeErrorCode": 0,
[2025-11-23 03:15:54]     "exeErrorDiag": "",
[2025-11-23 03:15:54]     "pilotErrorCode": 0,
[2025-11-23 03:15:54]     "pilotErrorDiag": "",
[2025-11-23 03:15:54]  *** Listing of results directory ***
[2025-11-23 03:15:54] total 1331892
[2025-11-23 03:15:54] -rw-r--r--. 1 boinc boinc    576529 Nov 18 18:59 pilot3.tar.gz
[2025-11-23 03:15:54] -rwx------. 1 boinc boinc     36292 Nov 18 19:01 runpilot2-wrapper.sh
[2025-11-23 03:15:54] -rw-r--r--. 1 boinc boinc      5112 Nov 18 19:01 queuedata.json
[2025-11-23 03:15:54] -rw-r--r--. 1 boinc boinc       100 Nov 22 01:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 03:15:54] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 01:34 run_atlas
[2025-11-23 03:15:54] -rw-r--r--. 1 boinc boinc       105 Nov 22 01:34 job.xml
[2025-11-23 03:15:54] -rw-r--r--. 1 boinc boinc      6391 Nov 22 01:34 init_data.xml
[2025-11-23 03:15:54] -rw-r--r--. 2 boinc boinc 411332351 Nov 22 01:34 EVNT.47493065._000549.pool.root.1
[2025-11-23 03:15:54] -rw-r--r--. 2 boinc boinc     15120 Nov 22 01:34 start_atlas.sh
[2025-11-23 03:15:54] drwxrwx--x. 2 boinc boinc        68 Nov 22 01:34 shared
[2025-11-23 03:15:54] -rw-r--r--. 2 boinc boinc    590091 Nov 22 01:34 input.tar.gz
[2025-11-23 03:15:54] -rw-r--r--. 1 boinc boinc         0 Nov 22 01:34 boinc_lockfile
[2025-11-23 03:15:54] -rw-r--r--. 1 boinc boinc      2773 Nov 22 01:35 pandaJob.out
[2025-11-23 03:15:54] -rw-------. 1 boinc boinc    989798 Nov 22 01:38 agis_schedconf.cvmfs.json
[2025-11-23 03:15:54] drwx------. 5 boinc boinc      4096 Nov 22 01:39 pilot3
[2025-11-23 03:15:54] -rw-r--r--. 1 boinc boinc       533 Nov 23 02:48 boinc_task_state.xml
[2025-11-23 03:15:54] -rw-------. 1 boinc boinc 919017245 Nov 23 03:11 HITS.47493068._005488.pool.root.1
[2025-11-23 03:15:54] -rw-------. 1 boinc boinc      1031 Nov 23 03:12 memory_monitor_summary.json
[2025-11-23 03:15:54] -rw-------. 1 boinc boinc   1526164 Nov 23 03:13 agis_ddmendpoints.agis.ALL.json
[2025-11-23 03:15:54] -rw-------. 1 boinc boinc   2554906 Nov 23 03:13 log.47493068._005488.job.log.tgz.1
[2025-11-23 03:15:54] -rw-------. 1 boinc boinc      8625 Nov 23 03:14 heartbeat.json
[2025-11-23 03:15:54] -rw-------. 1 boinc boinc        95 Nov 23 03:15 pilot_heartbeat.json
[2025-11-23 03:15:54] -rw-r--r--. 1 boinc boinc      8192 Nov 23 03:15 boinc_mmap_file
[2025-11-23 03:15:54] -rw-r--r--. 1 boinc boinc        29 Nov 23 03:15 wrapper_checkpoint.txt
[2025-11-23 03:15:54] -rw-------. 1 boinc boinc      5069 Nov 23 03:15 pilotlog.txt
[2025-11-23 03:15:54] -rw-------. 1 boinc boinc  12246671 Nov 23 03:15 log.47493068._005488.job.log.1
[2025-11-23 03:15:54] -rw-------. 1 boinc boinc       353 Nov 23 03:15 output.list
[2025-11-23 03:15:54] -rw-r--r--. 1 boinc boinc       620 Nov 23 03:15 runtime_log
[2025-11-23 03:15:54] -rw-------. 1 boinc boinc  14817280 Nov 23 03:15 result.tar.gz
[2025-11-23 03:15:54] -rw-------. 1 boinc boinc       662 Nov 23 03:15 tfQMDmRCff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmu9FKDmCFeZtm.diag
[2025-11-23 03:15:54] -rw-r--r--. 1 boinc boinc      8703 Nov 23 03:15 runtime_log.err
[2025-11-23 03:15:54] -rw-r--r--. 1 boinc boinc     21407 Nov 23 03:15 stderr.txt
[2025-11-23 03:15:54] HITS file was successfully produced:
[2025-11-23 03:15:54] -rw-------. 1 boinc boinc 919017245 Nov 23 03:11 shared/HITS.pool.root.1
[2025-11-23 03:15:54]  *** Contents of shared directory: ***
[2025-11-23 03:15:54] total 1314240
[2025-11-23 03:15:54] -rw-r--r--. 2 boinc boinc 411332351 Nov 22 01:34 ATLAS.root_0
[2025-11-23 03:15:54] -rw-r--r--. 2 boinc boinc     15120 Nov 22 01:34 start_atlas.sh
[2025-11-23 03:15:54] -rw-r--r--. 2 boinc boinc    590091 Nov 22 01:34 input.tar.gz
[2025-11-23 03:15:54] -rw-------. 1 boinc boinc 919017245 Nov 23 03:11 HITS.pool.root.1
[2025-11-23 03:15:54] -rw-------. 1 boinc boinc  14817280 Nov 23 03:15 result.tar.gz
03:15:55 (30912): run_atlas exited; CPU time 339044.788450
03:15:55 (30912): called boinc_finish(0)

</stderr_txt>
]]>

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