Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-18 23:34:37 (13112): vboxwrapper version 26210
2025-11-18 23:34:37 (13112): BOINC client version: 8.2.5
2025-11-18 23:34:38 (13112): Detected: VirtualBox VboxManage Interface (Version: 7.2.4)
2025-11-18 23:34:38 (13112): Successfully copied 'init_data.xml' to the shared directory.
2025-11-18 23:34:38 (13112): Create VM. (boinc_5a76f5f96cd14332, slot#3)
2025-11-18 23:34:39 (13112): Setting Memory Size for VM. (4600MB)
2025-11-18 23:34:39 (13112): Setting CPU Count for VM. (6)
2025-11-18 23:34:39 (13112): Setting Chipset Options for VM.
2025-11-18 23:34:40 (13112): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-18 23:34:40 (13112): Setting Boot Options for VM.
2025-11-18 23:34:40 (13112): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-18 23:34:41 (13112): Enabling VM Network Access.
2025-11-18 23:34:41 (13112): Disabling USB Support for VM.
2025-11-18 23:34:41 (13112): Disabling COM Port Support for VM.
2025-11-18 23:34:41 (13112): Disabling LPT Port Support for VM.
2025-11-18 23:34:42 (13112): Disabling Audio Support for VM.
2025-11-18 23:34:42 (13112): Disabling Clipboard Support for VM.
2025-11-18 23:34:42 (13112): Disabling Drag and Drop Support for VM.
2025-11-18 23:34:42 (13112): Adding storage controller(s) to VM.
2025-11-18 23:34:43 (13112): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-18 23:34:44 (13112): Attempts: 2
2025-11-18 23:34:45 (13112): Adding VirtualBox Guest Additions to VM.
2025-11-18 23:34:45 (13112): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-18 23:34:45 (13112): forwarding host port 60328 to guest port 80
2025-11-18 23:34:45 (13112): Enabling remote desktop for VM.
2025-11-18 23:34:46 (13112): Enabling shared directory for VM.
2025-11-18 23:34:47 (13112): Starting VM using VBoxManage interface. (boinc_5a76f5f96cd14332, slot#3)
2025-11-18 23:34:51 (13112): Successfully started VM. (PID = '2196')
2025-11-18 23:34:51 (13112): Reporting VM Process ID to BOINC.
2025-11-18 23:34:51 (13112): Guest Log: BIOS: VirtualBox 7.2.4
2025-11-18 23:34:51 (13112): Guest Log: CPUID EDX: 0x178bfbff
2025-11-18 23:34:51 (13112): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-18 23:34:51 (13112): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-18 23:34:51 (13112): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-18 23:34:51 (13112): Detected: Web Application Enabled (http://localhost:60328)
2025-11-18 23:34:51 (13112): Detected: Remote Desktop Enabled (localhost:60329)
2025-11-18 23:34:51 (13112): Preference change detected
2025-11-18 23:34:51 (13112): Setting CPU throttle for VM. (95%)
2025-11-18 23:34:51 (13112): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-18 23:34:53 (13112): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-18 23:34:53 (13112): Guest Log: BIOS: Booting from Hard Disk...
2025-11-18 23:34:56 (13112): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-18 23:34:56 (13112): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-18 23:34:56 (13112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-18 23:34:56 (13112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-18 23:34:56 (13112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-18 23:34:56 (13112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-18 23:34:56 (13112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-18 23:34:56 (13112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-18 23:34:56 (13112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-18 23:34:56 (13112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-18 23:34:56 (13112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-18 23:34:56 (13112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-18 23:34:56 (13112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-18 23:34:56 (13112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-18 23:34:56 (13112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-18 23:34:56 (13112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-18 23:34:56 (13112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-18 23:34:56 (13112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-18 23:34:56 (13112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-18 23:34:56 (13112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-18 23:34:56 (13112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-18 23:34:56 (13112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-18 23:34:56 (13112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-18 23:34:56 (13112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-18 23:34:56 (13112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-18 23:34:56 (13112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-18 23:34:56 (13112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-18 23:34:56 (13112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-18 23:34:56 (13112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-18 23:34:56 (13112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-18 23:34:56 (13112): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-18 23:34:56 (13112): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-18 23:35:03 (13112): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-18 23:35:03 (13112): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-18 23:35:06 (13112): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-18 23:35:06 (13112): Guest Log: 00:00:00.000059 main     Log opened 2025-11-18T23:35:03.956799000Z
2025-11-18 23:35:06 (13112): Guest Log: 00:00:00.000111 main     OS Product: Linux
2025-11-18 23:35:06 (13112): Guest Log: 00:00:00.000129 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-18 23:35:06 (13112): Guest Log: 00:00:00.000146 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-18 23:35:06 (13112): Guest Log: 00:00:00.000163 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-18 23:35:06 (13112): Guest Log: 00:00:00.000163 main     Process ID: 1345
2025-11-18 23:35:06 (13112): Guest Log: 00:00:00.000163 main     Package type: LINUX_64BITS_GENERIC
2025-11-18 23:35:06 (13112): Guest Log: 00:00:00.000579 main     5.2.32 r132073 started. Verbose level = 0
2025-11-18 23:35:06 (13112): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-18 23:35:06 (13112): Guest Log: [INFO] Mounting shared directory
2025-11-18 23:35:06 (13112): Guest Log: [INFO] Checking for init_data.xml
2025-11-18 23:35:07 (13112): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-18 23:35:07 (13112): Guest Log: [INFO] Detected branch: prod
2025-11-18 23:35:07 (13112): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-18 23:35:07 (13112): Guest Log: Copying input files
2025-11-18 23:35:08 (13112): Guest Log: Copied input files into RunAtlas.
2025-11-18 23:35:08 (13112): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-18 23:35:08 (13112): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-18 23:35:08 (13112): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-18 23:35:08 (13112): Guest Log: Further information can be found at the LHC@home message board.
2025-11-18 23:35:16 (13112): Guest Log: 00:00:10.002575 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 444 629 000ns (GuestNow=1 763 505 315 513 325 000 ns GuestLast=1 763 508 903 957 954 000 ns fSetTimeLastLoop=true )
2025-11-18 23:35:16 (13112): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-18 23:35:17 (13112): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-18 23:35:17 (13112): Guest Log: 2.6.3.0 1619 0 32192 153017 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-18 23:35:17 (13112): Guest Log: copied the webapp to /var/www
2025-11-18 23:35:17 (13112): Guest Log: ATHENA_PROC_NUMBER=6
2025-11-18 23:35:17 (13112): Guest Log: ATHENA_CORE_NUMBER=6
2025-11-18 23:35:17 (13112): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-18 23:35:17 (13112): Guest Log:  *** Starting ATLAS job. (PandaID=6891590857 taskID=47493068) ***
2025-11-19 01:14:53 (13112): Status Report: Elapsed Time: '6000.000000'
2025-11-19 01:14:53 (13112): Status Report: CPU Time: '32300.734375'
2025-11-19 02:54:56 (13112): Status Report: Elapsed Time: '12000.000000'
2025-11-19 02:54:56 (13112): Status Report: CPU Time: '67238.843750'
2025-11-19 04:34:58 (13112): Status Report: Elapsed Time: '18000.000000'
2025-11-19 04:34:58 (13112): Status Report: CPU Time: '102177.109375'
2025-11-19 06:15:01 (13112): Status Report: Elapsed Time: '24000.000000'
2025-11-19 06:15:01 (13112): Status Report: CPU Time: '137086.796875'
2025-11-19 07:55:03 (13112): Status Report: Elapsed Time: '30000.000000'
2025-11-19 07:55:03 (13112): Status Report: CPU Time: '172002.562500'
2025-11-19 09:35:06 (13112): Status Report: Elapsed Time: '36000.000000'
2025-11-19 09:35:06 (13112): Status Report: CPU Time: '206934.250000'
2025-11-19 11:15:08 (13112): Status Report: Elapsed Time: '42000.000000'
2025-11-19 11:15:08 (13112): Status Report: CPU Time: '241875.828125'
2025-11-19 11:46:11 (13112): Guest Log:  *** Job finished ***
2025-11-19 11:46:11 (13112): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-19 11:46:11 (13112): Guest Log: 2025-11-19 10:45:35,622 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-19 11:46:11 (13112): Guest Log: 2025-11-19 10:45:35,622 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-19 11:46:11 (13112): Guest Log: 2025-11-19 10:46:03,269 | INFO     | [monitor] cgroup control has ended
2025-11-19 11:46:11 (13112): Guest Log: 2025-11-19 10:46:05,117 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139769550817088)>', '<ExcThread(monitor, started 139768797046528)>']
2025-11-19 11:46:11 (13112): Guest Log: 2025-11-19 10:46:05,837 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-19 11:46:11 (13112): Guest Log: 2025-11-19 10:46:05,837 | INFO     | [monitor] control thread has ended
2025-11-19 11:46:11 (13112): Guest Log: 2025-11-19 10:46:10,122 | INFO     | all workflow threads have been joined
2025-11-19 11:46:11 (13112): Guest Log: 2025-11-19 10:46:10,123 | INFO     | end of generic workflow (traces error code: 0)
2025-11-19 11:46:11 (13112): Guest Log: 2025-11-19 10:46:10,123 | INFO     | traces error code: 0
2025-11-19 11:46:11 (13112): Guest Log: 2025-11-19 10:46:10,123 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-19 11:46:11 (13112): Guest Log: 2025-11-19 10:46:10,220 [wrapper] ==== pilot stdout END ====
2025-11-19 11:46:11 (13112): Guest Log: 2025-11-19 10:46:10,224 [wrapper] ==== wrapper stdout RESUME ====
2025-11-19 11:46:11 (13112): Guest Log: 2025-11-19 10:46:10,227 [wrapper] pilotpid: 6020
2025-11-19 11:46:11 (13112): Guest Log: 2025-11-19 10:46:10,230 [wrapper] Pilot exit status: 0
2025-11-19 11:46:11 (13112): Guest Log: 2025-11-19 10:46:10,244 [wrapper] pandaids: 6891590857
2025-11-19 11:46:11 (13112): Guest Log: 2025-11-19 10:46:10,277 [wrapper] cleanup supervisor_pilot 29112 6021
2025-11-19 11:46:11 (13112): Guest Log: 2025-11-19 10:46:10,282 [wrapper] Test setup, not cleaning
2025-11-19 11:46:11 (13112): Guest Log: 2025-11-19 10:46:10,287 [wrapper] apfmon messages muted
2025-11-19 11:46:11 (13112): Guest Log: 2025-11-19 10:46:10,291 [wrapper] ==== wrapper stdout END ====
2025-11-19 11:46:11 (13112): Guest Log: 2025-11-19 10:46:10,294 [wrapper] ==== wrapper stderr END ====
2025-11-19 11:46:11 (13112): Guest Log:  *** Error codes and diagnostics ***
2025-11-19 11:46:11 (13112): Guest Log:     "exeErrorCode": 0,
2025-11-19 11:46:11 (13112): Guest Log:     "exeErrorDiag": "",
2025-11-19 11:46:11 (13112): Guest Log:     "pilotErrorCode": 0,
2025-11-19 11:46:11 (13112): Guest Log:     "pilotErrorDiag": "",
2025-11-19 11:46:11 (13112): Guest Log:  *** Listing of results directory ***
2025-11-19 11:46:11 (13112): Guest Log: total 924988
2025-11-19 11:46:11 (13112): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 18 17:59 pilot3.tar.gz
2025-11-19 11:46:11 (13112): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 18 18:05 queuedata.json
2025-11-19 11:46:11 (13112): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 18 18:05 runpilot2-wrapper.sh
2025-11-19 11:46:11 (13112): Guest Log: -rwxr-xr-x. 1 atlas atlas    590092 Nov 18 22:35 input.tar.gz
2025-11-19 11:46:11 (13112): Guest Log: -rwxr-xr-x. 1 atlas atlas      8583 Nov 18 22:35 init_data.xml
2025-11-19 11:46:11 (13112): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Nov 18 22:35 start_atlas.sh
2025-11-19 11:46:11 (13112): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 18 22:35 EVNT.47493065._000556.pool.root.1 -> /data/./ATLAS.root_0
2025-11-19 11:46:11 (13112): Guest Log: -rw-r--r--. 1 atlas atlas      2773 Nov 18 22:35 pandaJob.out
2025-11-19 11:46:11 (13112): Guest Log: -rw-------. 1 atlas atlas    992790 Nov 18 22:36 agis_schedconf.cvmfs.json
2025-11-19 11:46:11 (13112): Guest Log: drwx------. 5 atlas atlas      4096 Nov 18 22:36 pilot3
2025-11-19 11:46:11 (13112): Guest Log: -rw-------. 1 atlas atlas 928393121 Nov 19 10:44 HITS.47493068._005552.pool.root.1
2025-11-19 11:46:11 (13112): Guest Log: -rw-------. 1 atlas atlas        95 Nov 19 10:44 pilot_heartbeat.json
2025-11-19 11:46:11 (13112): Guest Log: -rw-------. 1 atlas atlas      1040 Nov 19 10:44 memory_monitor_summary.json
2025-11-19 11:46:11 (13112): Guest Log: -rw-------. 1 atlas atlas   1525063 Nov 19 10:44 agis_ddmendpoints.agis.ALL.json
2025-11-19 11:46:11 (13112): Guest Log: -rw-------. 1 atlas atlas   1713006 Nov 19 10:44 log.47493068._005552.job.log.tgz.1
2025-11-19 11:46:11 (13112): Guest Log: -rw-------. 1 atlas atlas      8636 Nov 19 10:45 heartbeat.json
2025-11-19 11:46:11 (13112): Guest Log: -rw-------. 1 atlas atlas      4991 Nov 19 10:46 pilotlog.txt
2025-11-19 11:46:11 (13112): Guest Log: -rw-------. 1 atlas atlas   5756698 Nov 19 10:46 log.47493068._005552.job.log.1
2025-11-19 11:46:11 (13112): Guest Log: -rw-------. 1 atlas atlas       353 Nov 19 10:46 output.list
2025-11-19 11:46:11 (13112): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 19 10:46 runtime_log
2025-11-19 11:46:11 (13112): Guest Log: -rw-------. 1 atlas atlas   7485440 Nov 19 10:46 result.tar.gz
2025-11-19 11:46:11 (13112): Guest Log: -rw-r--r--. 1 atlas atlas      8643 Nov 19 10:46 runtime_log.err
2025-11-19 11:46:11 (13112): Guest Log: -rw-------. 1 atlas atlas       664 Nov 19 10:46 g45KDmOGff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxAGKDmE8aiKo.diag
2025-11-19 11:46:11 (13112): Guest Log: Looking for outputfile HITS.47493068._005552.pool.root.1
2025-11-19 11:46:11 (13112): Guest Log: HITS file was successfully produced
2025-11-19 11:46:11 (13112): Guest Log: -rw-------. 1 atlas atlas 928393121 Nov 19 10:44 /home/atlas/RunAtlas/HITS.47493068._005552.pool.root.1
2025-11-19 11:46:15 (13112): Guest Log: Successfully finished the ATLAS job!
2025-11-19 11:46:15 (13112): Guest Log: Copying the results back to the shared directory!
2025-11-19 11:46:15 (13112): Guest Log:  *** Contents of shared directory: ***
2025-11-19 11:46:15 (13112): Guest Log: total 1314120
2025-11-19 11:46:15 (13112): Guest Log: -rwxrwxrwx. 1 root root 409152284 Nov 18 22:34 ATLAS.root_0
2025-11-19 11:46:15 (13112): Guest Log: -rwxrwxrwx. 1 root root 928393121 Nov 19  2025 HITS.pool.root.1
2025-11-19 11:46:15 (13112): Guest Log: -rwxrwxrwx. 1 root root      8583 Nov 18 22:34 init_data.xml
2025-11-19 11:46:15 (13112): Guest Log: -rwxrwxrwx. 1 root root    590092 Nov 18 22:34 input.tar.gz
2025-11-19 11:46:15 (13112): Guest Log: -rwxrwxrwx. 1 root root   7485440 Nov 19  2025 result.tar.gz
2025-11-19 11:46:15 (13112): Guest Log: -rwxrwxrwx. 1 root root     15120 Nov 18 22:34 start_atlas.sh
2025-11-19 11:46:15 (13112): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-19 11:46:15 (13112): VM Completion File Detected.
2025-11-19 11:46:15 (13112): Powering off VM.
2025-11-19 11:46:15 (13112): Successfully stopped VM.
2025-11-19 11:46:15 (13112): Deregistering VM. (boinc_5a76f5f96cd14332, slot#3)
2025-11-19 11:46:15 (13112): Removing network bandwidth throttle group from VM.
2025-11-19 11:46:16 (13112): Removing VM from VirtualBox.
2025-11-19 11:46:21 (13112): called boinc_finish(0)

</stderr_txt>
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