Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:23:34 (4026793): wrapper (7.7.26015): starting
11:23:34 (4026793): wrapper: running run_atlas (--nthreads 4)
[2025-11-26 11:23:34] Arguments: --nthreads 4
[2025-11-26 11:23:34] Threads: 4
[2025-11-26 11:23:34] Checking for CVMFS
[2025-11-26 11:23:34] No cvmfs_config command found, will try listing directly
[2025-11-26 11:23:34] CVMFS is ok
[2025-11-26 11:23:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 11:23:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 11:23:34] Further information can be found at the LHC@home message board.
[2025-11-26 11:23:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 11:23:34] Checking for apptainer binary...
[2025-11-26 11:23:34] which: no apptainer in ((null))
[2025-11-26 11:23:34] apptainer is not installed, using version from CVMFS
[2025-11-26 11:23:34] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 11:23:35] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot112/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2025-11-26 11:23:35] apptainer works
[2025-11-26 11:23:35] Set ATHENA_PROC_NUMBER=4
[2025-11-26 11:23:35] Set ATHENA_CORE_NUMBER=4
[2025-11-26 11:23:35] Starting ATLAS job with PandaID=6891588682
[2025-11-26 11:23:35] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot112/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 02:22:29]  *** The last 200 lines of the pilot log: ***
[2025-11-27 02:22:29] 2025-11-27 01:21:37,270 | INFO     | using path: /scratch/boinc/var/slot112/slots/0/PanDA_Pilot-6891588682/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 02:22:29] 2025-11-27 01:21:37,271 | INFO     | extracted standard info from prmon json
[2025-11-27 02:22:29] 2025-11-27 01:21:37,271 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 02:22:29] 2025-11-27 01:21:37,271 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 02:22:29] 2025-11-27 01:21:37,286 | INFO     | fitting pss+swap vs Time
[2025-11-27 02:22:29] 2025-11-27 01:21:37,287 | INFO     | sum of square deviations: 213481368282.0
[2025-11-27 02:22:29] 2025-11-27 01:21:37,307 | INFO     | sum of deviations: 436114271263.0
[2025-11-27 02:22:29] 2025-11-27 01:21:37,307 | INFO     | mean x: 1764179565.0
[2025-11-27 02:22:29] 2025-11-27 01:21:37,308 | INFO     | mean y: 2281029.3907134766
[2025-11-27 02:22:29] 2025-11-27 01:21:37,308 | INFO     | intersect: -3601705077.493927
[2025-11-27 02:22:29] 2025-11-27 01:21:37,309 | INFO     | chi2: 4.136343382738489
[2025-11-27 02:22:29] 2025-11-27 01:21:37,310 | INFO     | sum of square deviations: 209875337879.5
[2025-11-27 02:22:29] 2025-11-27 01:21:37,315 | INFO     | monitor loop #3645: job 0:6891588682 is in state 'finished'
[2025-11-27 02:22:29] 2025-11-27 01:21:37,329 | INFO     | sum of deviations: 626792929303.0
[2025-11-27 02:22:29] 2025-11-27 01:21:37,329 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:22:29] 2025-11-27 01:21:37,329 | INFO     | mean x: 1764179412.5
[2025-11-27 02:22:29] 2025-11-27 01:21:37,330 | INFO     | mean y: 2289086.494305239
[2025-11-27 02:22:29] 2025-11-27 01:21:37,330 | INFO     | intersect: -5266434685.194399
[2025-11-27 02:22:29] 2025-11-27 01:21:37,331 | INFO     | chi2: 1.8858103425844777
[2025-11-27 02:22:29] 2025-11-27 01:21:37,331 | INFO     | current chi2=1.8858103425844777 (change=54.408757492083105 %)
[2025-11-27 02:22:29] 2025-11-27 01:21:37,332 | INFO     | sum of square deviations: 206310145452.0
[2025-11-27 02:22:29] 2025-11-27 01:21:37,351 | INFO     | sum of deviations: 628677337338.0
[2025-11-27 02:22:29] 2025-11-27 01:21:37,351 | INFO     | mean x: 1764179260.0
[2025-11-27 02:22:29] 2025-11-27 01:21:37,351 | INFO     | mean y: 2289165.202749141
[2025-11-27 02:22:29] 2025-11-27 01:21:37,351 | INFO     | intersect: -5373595366.960337
[2025-11-27 02:22:29] 2025-11-27 01:21:37,352 | INFO     | chi2: 1.8607448240293551
[2025-11-27 02:22:29] 2025-11-27 01:21:37,352 | INFO     | current chi2=1.8607448240293551 (change=1.3291643379561997 %)
[2025-11-27 02:22:29] 2025-11-27 01:21:37,352 | INFO     | right removable region: 872
[2025-11-27 02:22:29] 2025-11-27 01:21:37,353 | INFO     | sum of square deviations: 209875337879.5
[2025-11-27 02:22:29] 2025-11-27 01:21:37,371 | INFO     | sum of deviations: 294629286025.5
[2025-11-27 02:22:29] 2025-11-27 01:21:37,371 | INFO     | mean x: 1764179717.5
[2025-11-27 02:22:29] 2025-11-27 01:21:37,371 | INFO     | mean y: 2286997.777904328
[2025-11-27 02:22:29] 2025-11-27 01:21:37,371 | INFO     | intersect: -2474321334.765315
[2025-11-27 02:22:29] 2025-11-27 01:21:37,372 | INFO     | chi2: 2.406538295108769
[2025-11-27 02:22:29] 2025-11-27 01:21:37,372 | INFO     | current chi2=2.406538295108769 (change=41.81966842618596 %)
[2025-11-27 02:22:29] 2025-11-27 01:21:37,373 | INFO     | sum of square deviations: 206310145452.0
[2025-11-27 02:22:29] 2025-11-27 01:21:37,391 | INFO     | sum of deviations: 285692250841.9999
[2025-11-27 02:22:29] 2025-11-27 01:21:37,391 | INFO     | mean x: 1764179870.0
[2025-11-27 02:22:29] 2025-11-27 01:21:37,391 | INFO     | mean y: 2287379.3550973656
[2025-11-27 02:22:29] 2025-11-27 01:21:37,392 | INFO     | intersect: -2440697268.085375
[2025-11-27 02:22:29] 2025-11-27 01:21:37,393 | INFO     | chi2: 2.404806282659145
[2025-11-27 02:22:29] 2025-11-27 01:21:37,393 | INFO     | current chi2=2.404806282659145 (change=0.0719711152381782 %)
[2025-11-27 02:22:29] 2025-11-27 01:21:37,393 | INFO     | left removable region: 20
[2025-11-27 02:22:29] 2025-11-27 01:21:37,394 | INFO     | sum of square deviations: 191777039473.0
[2025-11-27 02:22:29] 2025-11-27 01:21:37,410 | INFO     | sum of deviations: 475341275394.5
[2025-11-27 02:22:29] 2025-11-27 01:21:37,411 | INFO     | mean x: 1764179839.5
[2025-11-27 02:22:29] 2025-11-27 01:21:37,411 | INFO     | mean y: 2295671.2570422534
[2025-11-27 02:22:29] 2025-11-27 01:21:37,411 | INFO     | intersect: -4370425365.826533
[2025-11-27 02:22:29] 2025-11-27 01:21:37,412 | INFO     | chi2: 0.10708043890318983
[2025-11-27 02:22:29] 2025-11-27 01:21:37,412 | INFO     | current memory leak: 2.48 B/s (using 852 data points, chi2=0.11)
[2025-11-27 02:22:29] 2025-11-27 01:21:37,414 | INFO     | could have reported an average CPU frequency of 2683 MHz (33 samples)
[2025-11-27 02:22:29] 2025-11-27 01:21:37,415 | INFO     | ..............................
[2025-11-27 02:22:29] 2025-11-27 01:21:37,415 | INFO     | . Timing measurements:
[2025-11-27 02:22:29] 2025-11-27 01:21:37,415 | INFO     | . get job = 0 s
[2025-11-27 02:22:29] 2025-11-27 01:21:37,415 | INFO     | . initial setup = 1 s
[2025-11-27 02:22:29] 2025-11-27 01:21:37,415 | INFO     | . payload setup = 9 s
[2025-11-27 02:22:29] 2025-11-27 01:21:37,415 | INFO     | . stage-in = 0 s
[2025-11-27 02:22:29] 2025-11-27 01:21:37,415 | INFO     | . payload execution = 53822 s
[2025-11-27 02:22:29] 2025-11-27 01:21:37,415 | INFO     | . stage-out = 2 s
[2025-11-27 02:22:29] 2025-11-27 01:21:37,415 | INFO     | . log creation = 0 s
[2025-11-27 02:22:29] 2025-11-27 01:21:37,415 | INFO     | ..............................
[2025-11-27 02:22:29] 2025-11-27 01:21:37,517 | INFO     | 
[2025-11-27 02:22:29] 2025-11-27 01:21:37,518 | INFO     | job summary report
[2025-11-27 02:22:29] 2025-11-27 01:21:37,518 | INFO     | --------------------------------------------------
[2025-11-27 02:22:29] 2025-11-27 01:21:37,518 | INFO     | PanDA job id: 6891588682
[2025-11-27 02:22:29] 2025-11-27 01:21:37,518 | INFO     | task id: 47493068
[2025-11-27 02:22:29] 2025-11-27 01:21:37,518 | INFO     | errors: (none)
[2025-11-27 02:22:29] 2025-11-27 01:21:37,518 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 02:22:29] 2025-11-27 01:21:37,518 | INFO     | pilot state: finished 
[2025-11-27 02:22:29] 2025-11-27 01:21:37,519 | INFO     | transexitcode: 0
[2025-11-27 02:22:29] 2025-11-27 01:21:37,519 | INFO     | exeerrorcode: 0
[2025-11-27 02:22:29] 2025-11-27 01:21:37,519 | INFO     | exeerrordiag: 
[2025-11-27 02:22:29] 2025-11-27 01:21:37,519 | INFO     | exitcode: 0
[2025-11-27 02:22:29] 2025-11-27 01:21:37,519 | INFO     | exitmsg: OK
[2025-11-27 02:22:29] 2025-11-27 01:21:37,519 | INFO     | cpuconsumptiontime: 213210 s
[2025-11-27 02:22:29] 2025-11-27 01:21:37,519 | INFO     | nevents: 1000
[2025-11-27 02:22:29] 2025-11-27 01:21:37,519 | INFO     | neventsw: 0
[2025-11-27 02:22:29] 2025-11-27 01:21:37,519 | INFO     | pid: 4038377
[2025-11-27 02:22:29] 2025-11-27 01:21:37,519 | INFO     | pgrp: 4038377
[2025-11-27 02:22:29] 2025-11-27 01:21:37,519 | INFO     | corecount: 4
[2025-11-27 02:22:29] 2025-11-27 01:21:37,519 | INFO     | event service: False
[2025-11-27 02:22:29] 2025-11-27 01:21:37,520 | INFO     | sizes: {0: 2284316, 1: 2284316, 7: 2284606, 11: 2284634, 53835: 2336767, 53839: 2345785, 53842: 2345969, 53850: 2346279}
[2025-11-27 02:22:29] 2025-11-27 01:21:37,520 | INFO     | --------------------------------------------------
[2025-11-27 02:22:29] 2025-11-27 01:21:37,520 | INFO     | 
[2025-11-27 02:22:29] 2025-11-27 01:21:37,520 | INFO     | executing command: ls -lF /scratch/boinc/var/slot112/slots/0
[2025-11-27 02:22:29] 2025-11-27 01:21:37,551 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 02:22:29] 2025-11-27 01:21:37,552 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 02:22:29] 2025-11-27 01:21:37,552 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 02:22:29] 2025-11-27 01:21:37,552 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 02:22:29] 2025-11-27 01:21:37,552 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 02:22:29] 2025-11-27 01:21:37,552 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 02:22:29] 2025-11-27 01:21:37,552 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 02:22:29] 2025-11-27 01:21:37,552 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 02:22:29] 2025-11-27 01:21:37,552 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 02:22:29] 2025-11-27 01:21:37,553 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 02:22:29] 2025-11-27 01:21:37,553 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 02:22:29] 2025-11-27 01:21:37,553 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 02:22:29] 2025-11-27 01:21:37,553 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 02:22:29] 2025-11-27 01:21:37,553 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 02:22:29] 2025-11-27 01:21:37,553 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 02:22:29] 2025-11-27 01:21:37,553 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 02:22:29] 2025-11-27 01:21:37,553 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 02:22:29] 2025-11-27 01:21:37,553 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 02:22:29] 2025-11-27 01:21:37,553 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 02:22:29] 2025-11-27 01:21:37,554 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 02:22:29] 2025-11-27 01:21:37,554 | INFO     | job 6891588682 has completed (purged errors)
[2025-11-27 02:22:29] 2025-11-27 01:21:37,554 | INFO     | overall cleanup function is called
[2025-11-27 02:22:29] 2025-11-27 01:21:38,571 | INFO     | --- collectZombieJob: --- 10, [4038377]
[2025-11-27 02:22:29] 2025-11-27 01:21:38,571 | INFO     | zombie collector waiting for pid 4038377
[2025-11-27 02:22:29] 2025-11-27 01:21:38,572 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 02:22:29] 2025-11-27 01:21:38,572 | INFO     | collected zombie processes
[2025-11-27 02:22:29] 2025-11-27 01:21:38,572 | INFO     | will attempt to kill all subprocesses of pid=4038377
[2025-11-27 02:22:29] 2025-11-27 01:21:39,424 | INFO     | PID=4030809 has CPU usage=26.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 02:22:29] 2025-11-27 01:21:39,425 | INFO     | .. there are 5 such processes running
[2025-11-27 02:22:29] 2025-11-27 01:21:39,809 | INFO     | process IDs to be killed: [4038377] (in reverse order)
[2025-11-27 02:22:29] 2025-11-27 01:21:40,058 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 02:22:29] 2025-11-27 01:21:40,058 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 02:22:29] 2025-11-27 01:21:40,090 | INFO     | did not find any defunct processes belonging to 4038377
[2025-11-27 02:22:29] 2025-11-27 01:21:40,118 | INFO     | did not find any defunct processes belonging to 4038377
[2025-11-27 02:22:29] 2025-11-27 01:21:40,120 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 02:22:29] 2025-11-27 01:21:40,120 | INFO     | ready for new job
[2025-11-27 02:22:29] 2025-11-27 01:21:40,121 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 02:22:29] 2025-11-27 01:21:40,127 | INFO     | ***************************************
[2025-11-27 02:22:29] 2025-11-27 01:21:40,127 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 02:22:29] 2025-11-27 01:21:40,127 | INFO     | ***************************************
[2025-11-27 02:22:29] 2025-11-27 01:21:40,128 | INFO     | 
[2025-11-27 02:22:29] 2025-11-27 01:21:40,136 | INFO     | architecture information:
[2025-11-27 02:22:29] 2025-11-27 01:21:40,137 | INFO     | executing command: cat /etc/os-release
[2025-11-27 02:22:29] 2025-11-27 01:21:40,161 | INFO     | cat /etc/os-release:
[2025-11-27 02:22:29] NAME="CentOS Linux"
[2025-11-27 02:22:29] VERSION="7 (Core)"
[2025-11-27 02:22:29] ID="centos"
[2025-11-27 02:22:29] ID_LIKE="rhel fedora"
[2025-11-27 02:22:29] VERSION_ID="7"
[2025-11-27 02:22:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 02:22:29] ANSI_COLOR="0;31"
[2025-11-27 02:22:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 02:22:29] HOME_URL="https://www.centos.org/"
[2025-11-27 02:22:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 02:22:29] 
[2025-11-27 02:22:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 02:22:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 02:22:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 02:22:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 02:22:29] 
[2025-11-27 02:22:29] 2025-11-27 01:21:40,161 | INFO     | ***************************************
[2025-11-27 02:22:29] 2025-11-27 01:21:40,665 | INFO     | executing command: df -mP /scratch/boinc/var/slot112/slots/0
[2025-11-27 02:22:29] 2025-11-27 01:21:40,693 | INFO     | sufficient remaining disk space (3291681390592 B)
[2025-11-27 02:22:29] 2025-11-27 01:21:40,694 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 02:22:29] 2025-11-27 01:21:40,694 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 02:22:29] 2025-11-27 01:21:40,694 | INFO     | update_server=False
[2025-11-27 02:22:29] 2025-11-27 01:21:40,694 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 02:22:29] 2025-11-27 01:21:40,695 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 02:22:29] 2025-11-27 01:21:40,696 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 02:22:29] 2025-11-27 01:21:40,698 | INFO     | all data control threads have been joined
[2025-11-27 02:22:29] 2025-11-27 01:21:40,837 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:22:29] 2025-11-27 01:21:40,838 | INFO     | aborting loop
[2025-11-27 02:22:29] 2025-11-27 01:21:41,317 | INFO     | all payload control threads have been joined
[2025-11-27 02:22:29] 2025-11-27 01:21:41,700 | INFO     | [job] retrieve thread has finished
[2025-11-27 02:22:29] 2025-11-27 01:21:41,704 | INFO     | [data] control thread has finished
[2025-11-27 02:22:29] 2025-11-27 01:21:41,790 | INFO     | all job control threads have been joined
[2025-11-27 02:22:29] 2025-11-27 01:21:41,813 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 02:22:29] 2025-11-27 01:21:41,843 | INFO     | [job] job monitor thread has finished
[2025-11-27 02:22:29] 2025-11-27 01:21:41,900 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 02:22:29] 2025-11-27 01:21:42,322 | INFO     | [payload] control thread has finished
[2025-11-27 02:22:29] 2025-11-27 01:21:42,488 | INFO     | [data] copytool_in thread has finished
[2025-11-27 02:22:29] 2025-11-27 01:21:42,528 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:22:29] 2025-11-27 01:21:42,701 | INFO     | [data] copytool_out thread has finished
[2025-11-27 02:22:29] 2025-11-27 01:21:42,712 | INFO     | [job] validate thread has finished
[2025-11-27 02:22:29] 2025-11-27 01:21:42,795 | INFO     | [job] control thread has finished
[2025-11-27 02:22:29] 2025-11-27 01:21:42,829 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 02:22:29] 2025-11-27 01:21:42,831 | INFO     | [payload] failed_post thread has finished
[2025-11-27 02:22:29] 2025-11-27 01:21:43,108 | INFO     | [payload] validate_post thread has finished
[2025-11-27 02:22:29] 2025-11-27 01:21:43,533 | INFO     | [job] queue monitor thread has finished
[2025-11-27 02:22:29] 2025-11-27 01:21:44,702 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 02:22:29] 2025-11-27 01:21:51,593 | INFO     | job.realtimelogging is not enabled
[2025-11-27 02:22:29] 2025-11-27 01:21:52,599 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 02:22:29] 2025-11-27 01:22:12,441 | INFO     | PID=4030809 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 02:22:29] 2025-11-27 01:22:12,442 | INFO     | .. there are 5 such processes running
[2025-11-27 02:22:29] 2025-11-27 01:22:12,443 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 02:22:29] 2025-11-27 01:22:12,443 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 02:22:29] 2025-11-27 01:22:12,443 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 02:22:29] 2025-11-27 01:22:16,734 | INFO     | [monitor] cgroup control has ended
[2025-11-27 02:22:29] 2025-11-27 01:22:18,763 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22385625519936)>', '<ExcThread(monitor, started 22385390491392)>']
[2025-11-27 02:22:29] 2025-11-27 01:22:19,471 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 02:22:29] 2025-11-27 01:22:19,471 | INFO     | [monitor] control thread has ended
[2025-11-27 02:22:29] 2025-11-27 01:22:23,788 | INFO     | all workflow threads have been joined
[2025-11-27 02:22:29] 2025-11-27 01:22:23,788 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 02:22:29] 2025-11-27 01:22:23,788 | INFO     | traces error code: 0
[2025-11-27 02:22:29] 2025-11-27 01:22:23,789 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 02:22:29] 2025-11-27 01:22:23,929 [wrapper] ==== pilot stdout END ====
[2025-11-27 02:22:29] 2025-11-27 01:22:23,931 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 02:22:29] 2025-11-27 01:22:23,934 [wrapper] pilotpid: 4030809
[2025-11-27 02:22:29] 2025-11-27 01:22:23,937 [wrapper] Pilot exit status: 0
[2025-11-27 02:22:29] 2025-11-27 01:22:23,950 [wrapper] pandaids: 6891588682
[2025-11-27 02:22:29] 2025-11-27 01:22:24,117 [wrapper] cleanup supervisor_pilot 1051816 4030810
[2025-11-27 02:22:29] 2025-11-27 01:22:24,120 [wrapper] Test setup, not cleaning
[2025-11-27 02:22:29] 2025-11-27 01:22:24,123 [wrapper] apfmon messages muted
[2025-11-27 02:22:29] 2025-11-27 01:22:24,127 [wrapper] ==== wrapper stdout END ====
[2025-11-27 02:22:29] 2025-11-27 01:22:24,129 [wrapper] ==== wrapper stderr END ====
[2025-11-27 02:22:29]  *** Error codes and diagnostics ***
[2025-11-27 02:22:29]     "exeErrorCode": 0,
[2025-11-27 02:22:29]     "exeErrorDiag": "",
[2025-11-27 02:22:29]     "pilotErrorCode": 0,
[2025-11-27 02:22:29]     "pilotErrorDiag": "",
[2025-11-27 02:22:29]  *** Listing of results directory ***
[2025-11-27 02:22:29] total 1317272
[2025-11-27 02:22:29] -rw-r--r-- 1 boinc boinc    576529 Nov 18 18:24 pilot3.tar.gz
[2025-11-27 02:22:29] -rw-r--r-- 1 boinc boinc      5112 Nov 18 18:40 queuedata.json
[2025-11-27 02:22:29] -rwx------ 1 boinc boinc     36292 Nov 18 18:43 runpilot2-wrapper.sh
[2025-11-27 02:22:29] -rw-r--r-- 1 boinc boinc       100 Nov 26 11:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 02:22:29] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 11:23 run_atlas
[2025-11-27 02:22:29] -rw-r--r-- 1 boinc boinc       105 Nov 26 11:23 job.xml
[2025-11-27 02:22:29] -rw-r--r-- 2 boinc boinc 412131597 Nov 26 11:23 EVNT.47493065._000517.pool.root.1
[2025-11-27 02:22:29] -rw-r--r-- 1 boinc boinc      6689 Nov 26 11:23 init_data.xml
[2025-11-27 02:22:29] -rw-r--r-- 2 boinc boinc     15120 Nov 26 11:23 start_atlas.sh
[2025-11-27 02:22:29] drwxrwx--x 2 boinc boinc      4096 Nov 26 11:23 shared
[2025-11-27 02:22:29] -rw-r--r-- 2 boinc boinc    590102 Nov 26 11:23 input.tar.gz
[2025-11-27 02:22:29] -rw-r--r-- 1 boinc boinc         0 Nov 26 11:23 boinc_lockfile
[2025-11-27 02:22:29] -rw-r--r-- 1 boinc boinc      2773 Nov 26 11:23 pandaJob.out
[2025-11-27 02:22:29] -rw------- 1 boinc boinc    991827 Nov 26 11:23 agis_schedconf.cvmfs.json
[2025-11-27 02:22:29] drwx------ 5 boinc boinc      4096 Nov 26 11:23 pilot3
[2025-11-27 02:22:29] -rw-r--r-- 1 boinc boinc       532 Nov 27 02:15 boinc_task_state.xml
[2025-11-27 02:22:29] -rw------- 1 boinc boinc 914687480 Nov 27 02:20 HITS.47493068._005166.pool.root.1
[2025-11-27 02:22:29] -rw------- 1 boinc boinc      1042 Nov 27 02:21 memory_monitor_summary.json
[2025-11-27 02:22:29] -rw------- 1 boinc boinc   1516240 Nov 27 02:21 agis_ddmendpoints.agis.ALL.json
[2025-11-27 02:22:29] -rw------- 1 boinc boinc   1634875 Nov 27 02:21 log.47493068._005166.job.log.tgz.1
[2025-11-27 02:22:29] -rw------- 1 boinc boinc      8592 Nov 27 02:21 heartbeat.json
[2025-11-27 02:22:29] -rw------- 1 boinc boinc        95 Nov 27 02:22 pilot_heartbeat.json
[2025-11-27 02:22:29] -rw------- 1 boinc boinc      4907 Nov 27 02:22 pilotlog.txt
[2025-11-27 02:22:29] -rw------- 1 boinc boinc   7435399 Nov 27 02:22 log.47493068._005166.job.log.1
[2025-11-27 02:22:29] -rw------- 1 boinc boinc       353 Nov 27 02:22 output.list
[2025-11-27 02:22:29] -rw-r--r-- 1 boinc boinc       620 Nov 27 02:22 runtime_log
[2025-11-27 02:22:29] -rw------- 1 boinc boinc   9093120 Nov 27 02:22 result.tar.gz
[2025-11-27 02:22:29] -rw-r--r-- 1 boinc boinc      9085 Nov 27 02:22 runtime_log.err
[2025-11-27 02:22:29] -rw------- 1 boinc boinc       670 Nov 27 02:22 bB4NDmhuef8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm86FKDmXN8pqm.diag
[2025-11-27 02:22:29] -rw-r--r-- 1 boinc boinc        28 Nov 27 02:22 wrapper_checkpoint.txt
[2025-11-27 02:22:29] -rw-r--r-- 1 boinc boinc      8192 Nov 27 02:22 boinc_mmap_file
[2025-11-27 02:22:29] -rw-r--r-- 1 boinc boinc     21115 Nov 27 02:22 stderr.txt
[2025-11-27 02:22:29] HITS file was successfully produced:
[2025-11-27 02:22:29] -rw------- 1 boinc boinc 914687480 Nov 27 02:20 shared/HITS.pool.root.1
[2025-11-27 02:22:29]  *** Contents of shared directory: ***
[2025-11-27 02:22:29] total 1305212
[2025-11-27 02:22:29] -rw-r--r-- 2 boinc boinc 412131597 Nov 26 11:23 ATLAS.root_0
[2025-11-27 02:22:29] -rw-r--r-- 2 boinc boinc     15120 Nov 26 11:23 start_atlas.sh
[2025-11-27 02:22:29] -rw-r--r-- 2 boinc boinc    590102 Nov 26 11:23 input.tar.gz
[2025-11-27 02:22:29] -rw------- 1 boinc boinc 914687480 Nov 27 02:20 HITS.pool.root.1
[2025-11-27 02:22:29] -rw------- 1 boinc boinc   9093120 Nov 27 02:22 result.tar.gz
02:22:30 (4026793): run_atlas exited; CPU time 216035.725908
02:22:30 (4026793): called boinc_finish(0)

</stderr_txt>
]]>

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