Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:50:08 (7796): wrapper (7.7.26015): starting
23:50:08 (7796): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 23:50:08] Arguments: --nthreads 8
[2025-11-21 23:50:08] Threads: 8
[2025-11-21 23:50:08] Checking for CVMFS
[2025-11-21 23:50:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 23:50:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 23:50:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 23:50:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 23:50:11] 2.11.2.0 6410 278592 138408 153147 0 236 25091148 25165824 4203 130560 4 131357715 99.885 75888070 3158 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-21 23:50:11] CVMFS is ok
[2025-11-21 23:50:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 23:50:11] Checking for apptainer binary...
[2025-11-21 23:50:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 23:50:11] Running /usr/bin/apptainer --version
[2025-11-21 23:50:11] apptainer version 1.3.2-1.el7
[2025-11-21 23:50:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 23:50:25] cg-vwn284.simple-grid.lan
[2025-11-21 23:50:25] apptainer works
[2025-11-21 23:50:25] Set ATHENA_PROC_NUMBER=8
[2025-11-21 23:50:25] Set ATHENA_CORE_NUMBER=8
[2025-11-21 23:50:25] Starting ATLAS job with PandaID=6891588106
[2025-11-21 23:50:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 01:38:07]  *** The last 200 lines of the pilot log: ***
[2025-11-23 01:38:07] 2025-11-23 00:37:13,835 | INFO     | monitor loop #6210: job 0:6891588106 is in state 'finished'
[2025-11-23 01:38:07] 2025-11-23 00:37:13,836 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 01:38:07] 2025-11-23 00:37:14,939 | INFO     | PID=11581 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 01:38:07] 2025-11-23 00:37:14,939 | INFO     | .. there are 9 such processes running
[2025-11-23 01:38:07] 2025-11-23 00:37:15,940 | INFO     | time since job start (92580s) is within the limit (172800.0s)
[2025-11-23 01:38:07] 2025-11-23 00:37:16,341 | INFO     | monitor loop #6211: job 0:6891588106 is in state 'finished'
[2025-11-23 01:38:07] 2025-11-23 00:37:16,342 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 01:38:07] 2025-11-23 00:37:17,947 | INFO     | time since job start (92582s) is within the limit (172800.0s)
[2025-11-23 01:38:07] 2025-11-23 00:37:18,846 | INFO     | monitor loop #6212: job 0:6891588106 is in state 'finished'
[2025-11-23 01:38:07] 2025-11-23 00:37:18,846 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 01:38:07] 2025-11-23 00:37:19,954 | INFO     | time since job start (92584s) is within the limit (172800.0s)
[2025-11-23 01:38:07] 2025-11-23 00:37:21,351 | INFO     | monitor loop #6213: job 0:6891588106 is in state 'finished'
[2025-11-23 01:38:07] 2025-11-23 00:37:21,351 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 01:38:07] 2025-11-23 00:37:21,781 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 01:38:07] 2025-11-23 00:37:21,782 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-23 01:38:07] 2025-11-23 00:37:21,784 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6891588106/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 01:38:07] 2025-11-23 00:37:21,784 | INFO     | extracted standard info from prmon json
[2025-11-23 01:38:07] 2025-11-23 00:37:21,784 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 01:38:07] 2025-11-23 00:37:21,784 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 01:38:07] 2025-11-23 00:37:21,813 | INFO     | fitting pss+swap vs Time
[2025-11-23 01:38:07] 2025-11-23 00:37:21,815 | INFO     | sum of square deviations: 1063364219774.9075
[2025-11-23 01:38:07] 2025-11-23 00:37:21,881 | INFO     | sum of deviations: 3640984646834.195
[2025-11-23 01:38:07] 2025-11-23 00:37:21,882 | INFO     | mean x: 1763812146.7029178
[2025-11-23 01:38:07] 2025-11-23 00:37:21,882 | INFO     | mean y: 2822555.2281167107
[2025-11-23 01:38:07] 2025-11-23 00:37:21,882 | INFO     | intersect: -6036512628.914523
[2025-11-23 01:38:07] 2025-11-23 00:37:21,884 | INFO     | chi2: 30.533744088345664
[2025-11-23 01:38:07] 2025-11-23 00:37:21,886 | INFO     | sum of square deviations: 1052822566072.649
[2025-11-23 01:38:07] 2025-11-23 00:37:21,950 | INFO     | sum of deviations: 4131579951265.4785
[2025-11-23 01:38:07] 2025-11-23 00:37:21,950 | INFO     | mean x: 1763811994.2069194
[2025-11-23 01:38:07] 2025-11-23 00:37:21,950 | INFO     | mean y: 2829650.8569527613
[2025-11-23 01:38:07] 2025-11-23 00:37:21,951 | INFO     | intersect: -6918878249.317401
[2025-11-23 01:38:07] 2025-11-23 00:37:21,952 | INFO     | chi2: 27.32996662018488
[2025-11-23 01:38:07] 2025-11-23 00:37:21,953 | INFO     | current chi2=27.32996662018488 (change=10.49257981232516 %)
[2025-11-23 01:38:07] 2025-11-23 00:37:21,953 | INFO     | right removable region: 1502
[2025-11-23 01:38:07] 2025-11-23 00:37:21,955 | INFO     | sum of square deviations: 1052821459532.6466
[2025-11-23 01:38:07] 2025-11-23 00:37:21,970 | INFO     | time since job start (92586s) is within the limit (172800.0s)
[2025-11-23 01:38:07] 2025-11-23 00:37:22,033 | INFO     | sum of deviations: 3024321384626.128
[2025-11-23 01:38:07] 2025-11-23 00:37:22,033 | INFO     | mean x: 1763812299.2069194
[2025-11-23 01:38:07] 2025-11-23 00:37:22,033 | INFO     | mean y: 2831474.73586161
[2025-11-23 01:38:07] 2025-11-23 00:37:22,033 | INFO     | intersect: -5063873052.094363
[2025-11-23 01:38:07] 2025-11-23 00:37:22,035 | INFO     | chi2: 25.982691794284154
[2025-11-23 01:38:07] 2025-11-23 00:37:22,035 | INFO     | current chi2=25.982691794284154 (change=14.904992590799198 %)
[2025-11-23 01:38:07] 2025-11-23 00:37:22,036 | INFO     | left removable region: 10
[2025-11-23 01:38:07] 2025-11-23 00:37:22,042 | INFO     | sum of square deviations: 1029874464571.5068
[2025-11-23 01:38:07] 2025-11-23 00:37:22,132 | INFO     | sum of deviations: 3066199852151.2505
[2025-11-23 01:38:07] 2025-11-23 00:37:22,132 | INFO     | mean x: 1763812268.7158177
[2025-11-23 01:38:07] 2025-11-23 00:37:22,133 | INFO     | mean y: 2848034.201072386
[2025-11-23 01:38:07] 2025-11-23 00:37:22,133 | INFO     | intersect: -5248472494.276305
[2025-11-23 01:38:07] 2025-11-23 00:37:22,134 | INFO     | chi2: 18.66522950661829
[2025-11-23 01:38:07] 2025-11-23 00:37:22,135 | INFO     | current memory leak: 2.98 B/s (using 1492 data points, chi2=18.67)
[2025-11-23 01:38:07] 2025-11-23 00:37:22,137 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-23 01:38:07] 2025-11-23 00:37:22,138 | INFO     | ..............................
[2025-11-23 01:38:07] 2025-11-23 00:37:22,138 | INFO     | . Timing measurements:
[2025-11-23 01:38:07] 2025-11-23 00:37:22,138 | INFO     | . get job = 0 s
[2025-11-23 01:38:07] 2025-11-23 00:37:22,138 | INFO     | . initial setup = 7 s
[2025-11-23 01:38:07] 2025-11-23 00:37:22,138 | INFO     | . payload setup = 164 s
[2025-11-23 01:38:07] 2025-11-23 00:37:22,138 | INFO     | . stage-in = 0 s
[2025-11-23 01:38:07] 2025-11-23 00:37:22,138 | INFO     | . payload execution = 92109 s
[2025-11-23 01:38:07] 2025-11-23 00:37:22,138 | INFO     | . stage-out = 6 s
[2025-11-23 01:38:07] 2025-11-23 00:37:22,138 | INFO     | . log creation = 2 s
[2025-11-23 01:38:07] 2025-11-23 00:37:22,139 | INFO     | ..............................
[2025-11-23 01:38:07] 2025-11-23 00:37:22,275 | INFO     | 
[2025-11-23 01:38:07] 2025-11-23 00:37:22,275 | INFO     | job summary report
[2025-11-23 01:38:07] 2025-11-23 00:37:22,276 | INFO     | --------------------------------------------------
[2025-11-23 01:38:07] 2025-11-23 00:37:22,276 | INFO     | PanDA job id: 6891588106
[2025-11-23 01:38:07] 2025-11-23 00:37:22,276 | INFO     | task id: 47493068
[2025-11-23 01:38:07] 2025-11-23 00:37:22,276 | INFO     | errors: (none)
[2025-11-23 01:38:07] 2025-11-23 00:37:22,276 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 01:38:07] 2025-11-23 00:37:22,276 | INFO     | pilot state: finished 
[2025-11-23 01:38:07] 2025-11-23 00:37:22,276 | INFO     | transexitcode: 0
[2025-11-23 01:38:07] 2025-11-23 00:37:22,276 | INFO     | exeerrorcode: 0
[2025-11-23 01:38:07] 2025-11-23 00:37:22,276 | INFO     | exeerrordiag: 
[2025-11-23 01:38:07] 2025-11-23 00:37:22,277 | INFO     | exitcode: 0
[2025-11-23 01:38:07] 2025-11-23 00:37:22,277 | INFO     | exitmsg: OK
[2025-11-23 01:38:07] 2025-11-23 00:37:22,277 | INFO     | cpuconsumptiontime: 340018 s
[2025-11-23 01:38:07] 2025-11-23 00:37:22,277 | INFO     | nevents: 1000
[2025-11-23 01:38:07] 2025-11-23 00:37:22,277 | INFO     | neventsw: 0
[2025-11-23 01:38:07] 2025-11-23 00:37:22,277 | INFO     | pid: 18158
[2025-11-23 01:38:07] 2025-11-23 00:37:22,277 | INFO     | pgrp: 18158
[2025-11-23 01:38:07] 2025-11-23 00:37:22,277 | INFO     | corecount: 8
[2025-11-23 01:38:07] 2025-11-23 00:37:22,277 | INFO     | event service: False
[2025-11-23 01:38:07] 2025-11-23 00:37:22,278 | INFO     | sizes: {0: 2298626, 1: 2298825, 12: 2298825, 23: 2298853, 33: 2298881, 44: 2298937, 55: 2299093, 66: 2299121, 76: 2299149, 87: 2299205, 98: 2299233, 102: 2299803, 
[2025-11-23 01:38:07] 2025-11-23 00:37:22,278 | INFO     | --------------------------------------------------
[2025-11-23 01:38:07] 2025-11-23 00:37:22,278 | INFO     | 
[2025-11-23 01:38:07] 2025-11-23 00:37:22,278 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2025-11-23 01:38:07] 2025-11-23 00:37:22,819 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 01:38:07] 2025-11-23 00:37:22,819 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 01:38:07] 2025-11-23 00:37:22,820 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 01:38:07] 2025-11-23 00:37:22,820 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 01:38:07] 2025-11-23 00:37:22,820 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 01:38:07] 2025-11-23 00:37:22,820 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 01:38:07] 2025-11-23 00:37:22,820 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 01:38:07] 2025-11-23 00:37:22,820 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 01:38:07] 2025-11-23 00:37:22,820 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 01:38:07] 2025-11-23 00:37:22,820 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 01:38:07] 2025-11-23 00:37:22,820 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 01:38:07] 2025-11-23 00:37:22,820 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 01:38:07] 2025-11-23 00:37:22,820 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 01:38:07] 2025-11-23 00:37:22,821 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 01:38:07] 2025-11-23 00:37:22,821 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 01:38:07] 2025-11-23 00:37:22,821 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 01:38:07] 2025-11-23 00:37:22,821 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 01:38:07] 2025-11-23 00:37:22,821 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 01:38:07] 2025-11-23 00:37:22,821 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 01:38:07] 2025-11-23 00:37:22,821 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 01:38:07] 2025-11-23 00:37:22,821 | INFO     | job 6891588106 has completed (purged errors)
[2025-11-23 01:38:07] 2025-11-23 00:37:22,821 | INFO     | overall cleanup function is called
[2025-11-23 01:38:07] 2025-11-23 00:37:23,838 | INFO     | --- collectZombieJob: --- 10, [18158]
[2025-11-23 01:38:07] 2025-11-23 00:37:23,838 | INFO     | zombie collector waiting for pid 18158
[2025-11-23 01:38:07] 2025-11-23 00:37:23,839 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 01:38:07] 2025-11-23 00:37:23,839 | INFO     | collected zombie processes
[2025-11-23 01:38:07] 2025-11-23 00:37:23,839 | INFO     | will attempt to kill all subprocesses of pid=18158
[2025-11-23 01:38:07] 2025-11-23 00:37:23,956 | INFO     | process IDs to be killed: [18158] (in reverse order)
[2025-11-23 01:38:07] 2025-11-23 00:37:24,864 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 01:38:07] 2025-11-23 00:37:24,864 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 01:38:07] 2025-11-23 00:37:24,868 | INFO     | did not find any defunct processes belonging to 18158
[2025-11-23 01:38:07] 2025-11-23 00:37:24,871 | INFO     | did not find any defunct processes belonging to 18158
[2025-11-23 01:38:07] 2025-11-23 00:37:24,930 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 01:38:07] 2025-11-23 00:37:24,931 | INFO     | ready for new job
[2025-11-23 01:38:07] 2025-11-23 00:37:24,931 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 01:38:07] 2025-11-23 00:37:24,938 | INFO     | ***************************************
[2025-11-23 01:38:07] 2025-11-23 00:37:24,938 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 01:38:07] 2025-11-23 00:37:24,938 | INFO     | ***************************************
[2025-11-23 01:38:07] 2025-11-23 00:37:24,938 | INFO     | 
[2025-11-23 01:38:07] 2025-11-23 00:37:24,939 | INFO     | pilot is running in a VM
[2025-11-23 01:38:07] 2025-11-23 00:37:24,939 | INFO     | architecture information:
[2025-11-23 01:38:07] 2025-11-23 00:37:24,949 | INFO     | executing command: cat /etc/os-release
[2025-11-23 01:38:07] 2025-11-23 00:37:25,273 | INFO     | cat /etc/os-release:
[2025-11-23 01:38:07] NAME="CentOS Linux"
[2025-11-23 01:38:07] VERSION="7 (Core)"
[2025-11-23 01:38:07] ID="centos"
[2025-11-23 01:38:07] ID_LIKE="rhel fedora"
[2025-11-23 01:38:07] VERSION_ID="7"
[2025-11-23 01:38:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 01:38:07] ANSI_COLOR="0;31"
[2025-11-23 01:38:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 01:38:07] HOME_URL="https://www.centos.org/"
[2025-11-23 01:38:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 01:38:07] 
[2025-11-23 01:38:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 01:38:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 01:38:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 01:38:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 01:38:07] 
[2025-11-23 01:38:07] 2025-11-23 00:37:25,273 | INFO     | ***************************************
[2025-11-23 01:38:07] 2025-11-23 00:37:25,776 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2025-11-23 01:38:07] 2025-11-23 00:37:25,941 | INFO     | sufficient remaining disk space (495156461568 B)
[2025-11-23 01:38:07] 2025-11-23 00:37:25,941 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 01:38:07] 2025-11-23 00:37:25,941 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 01:38:07] 2025-11-23 00:37:25,941 | INFO     | update_server=False
[2025-11-23 01:38:07] 2025-11-23 00:37:25,941 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 01:38:07] 2025-11-23 00:37:25,942 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 01:38:07] 2025-11-23 00:37:26,382 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 01:38:07] 2025-11-23 00:37:26,382 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 01:38:07] 2025-11-23 00:37:26,383 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 01:38:07] 2025-11-23 00:37:26,383 | INFO     | will abort loop
[2025-11-23 01:38:07] 2025-11-23 00:37:26,638 | INFO     | all payload control threads have been joined
[2025-11-23 01:38:07] 2025-11-23 00:37:26,812 | INFO     | all data control threads have been joined
[2025-11-23 01:38:07] 2025-11-23 00:37:26,947 | INFO     | [job] retrieve thread has finished
[2025-11-23 01:38:07] 2025-11-23 00:37:27,238 | INFO     | [job] validate thread has finished
[2025-11-23 01:38:07] 2025-11-23 00:37:27,254 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 01:38:07] 2025-11-23 00:37:27,258 | INFO     | [payload] failed_post thread has finished
[2025-11-23 01:38:07] 2025-11-23 00:37:27,292 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 01:38:07] 2025-11-23 00:37:27,301 | INFO     | all job control threads have been joined
[2025-11-23 01:38:07] 2025-11-23 00:37:27,309 | INFO     | [payload] validate_post thread has finished
[2025-11-23 01:38:07] 2025-11-23 00:37:27,388 | INFO     | [job] job monitor thread has finished
[2025-11-23 01:38:07] 2025-11-23 00:37:27,396 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 01:38:07] 2025-11-23 00:37:27,399 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 01:38:07] 2025-11-23 00:37:27,420 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 01:38:07] 2025-11-23 00:37:27,644 | INFO     | [payload] control thread has finished
[2025-11-23 01:38:07] 2025-11-23 00:37:27,817 | INFO     | [data] control thread has finished
[2025-11-23 01:38:07] 2025-11-23 00:37:27,948 | INFO     | [data] copytool_out thread has finished
[2025-11-23 01:38:07] 2025-11-23 00:37:28,171 | INFO     | [data] copytool_in thread has finished
[2025-11-23 01:38:07] 2025-11-23 00:37:28,298 | INFO     | [job] queue monitor thread has finished
[2025-11-23 01:38:07] 2025-11-23 00:37:28,307 | INFO     | [job] control thread has finished
[2025-11-23 01:38:07] 2025-11-23 00:37:28,403 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 01:38:07] 2025-11-23 00:37:31,428 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 01:38:07] 2025-11-23 00:37:55,208 | INFO     | PID=11581 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 01:38:07] 2025-11-23 00:37:55,208 | INFO     | .. there are 9 such processes running
[2025-11-23 01:38:07] 2025-11-23 00:37:55,208 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 01:38:07] 2025-11-23 00:37:55,209 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 01:38:07] 2025-11-23 00:37:55,209 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 01:38:07] 2025-11-23 00:37:56,659 | INFO     | [monitor] cgroup control has ended
[2025-11-23 01:38:07] 2025-11-23 00:37:57,940 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140201417189184)>', '<ExcThread(monitor, started 140200600655616)>']
[2025-11-23 01:38:07] 2025-11-23 00:37:58,225 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 01:38:07] 2025-11-23 00:37:58,225 | INFO     | [monitor] control thread has ended
[2025-11-23 01:38:07] 2025-11-23 00:38:02,966 | INFO     | all workflow threads have been joined
[2025-11-23 01:38:07] 2025-11-23 00:38:02,966 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 01:38:07] 2025-11-23 00:38:02,967 | INFO     | traces error code: 0
[2025-11-23 01:38:07] 2025-11-23 00:38:02,967 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 01:38:07] 2025-11-23 00:38:03,383 [wrapper] ==== pilot stdout END ====
[2025-11-23 01:38:07] 2025-11-23 00:38:03,446 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 01:38:07] 2025-11-23 00:38:03,522 [wrapper] pilotpid: 11581
[2025-11-23 01:38:07] 2025-11-23 00:38:03,593 [wrapper] Pilot exit status: 0
[2025-11-23 01:38:07] 2025-11-23 00:38:03,778 [wrapper] pandaids: 6891588106
[2025-11-23 01:38:07] 2025-11-23 00:38:04,465 [wrapper] cleanup supervisor_pilot  9824 11582
[2025-11-23 01:38:07] 2025-11-23 00:38:04,548 [wrapper] Test setup, not cleaning
[2025-11-23 01:38:07] 2025-11-23 00:38:04,640 [wrapper] apfmon messages muted
[2025-11-23 01:38:07] 2025-11-23 00:38:04,732 [wrapper] ==== wrapper stdout END ====
[2025-11-23 01:38:07] 2025-11-23 00:38:04,834 [wrapper] ==== wrapper stderr END ====
[2025-11-23 01:38:07]  *** Error codes and diagnostics ***
[2025-11-23 01:38:07]     "exeErrorCode": 0,
[2025-11-23 01:38:07]     "exeErrorDiag": "",
[2025-11-23 01:38:07]     "pilotErrorCode": 0,
[2025-11-23 01:38:07]     "pilotErrorDiag": "",
[2025-11-23 01:38:07]  *** Listing of results directory ***
[2025-11-23 01:38:07] total 1325404
[2025-11-23 01:38:07] -rw-r--r--. 1 boinc boinc    576529 Nov 18 18:24 pilot3.tar.gz
[2025-11-23 01:38:07] -rw-r--r--. 1 boinc boinc      5112 Nov 18 18:35 queuedata.json
[2025-11-23 01:38:07] -rwx------. 1 boinc boinc     36292 Nov 18 18:36 runpilot2-wrapper.sh
[2025-11-23 01:38:07] -rw-r--r--. 1 boinc boinc       100 Nov 21 23:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 01:38:07] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 23:50 run_atlas
[2025-11-23 01:38:07] -rw-r--r--. 1 boinc boinc       105 Nov 21 23:50 job.xml
[2025-11-23 01:38:07] -rw-r--r--. 2 boinc boinc 409278411 Nov 21 23:50 EVNT.47493065._000507.pool.root.1
[2025-11-23 01:38:07] -rw-r--r--. 1 boinc boinc      6392 Nov 21 23:50 init_data.xml
[2025-11-23 01:38:07] -rw-r--r--. 2 boinc boinc     15120 Nov 21 23:50 start_atlas.sh
[2025-11-23 01:38:07] drwxrwx--x. 2 boinc boinc        68 Nov 21 23:50 shared
[2025-11-23 01:38:07] -rw-r--r--. 2 boinc boinc    590095 Nov 21 23:50 input.tar.gz
[2025-11-23 01:38:07] -rw-r--r--. 1 boinc boinc         0 Nov 21 23:50 boinc_lockfile
[2025-11-23 01:38:07] -rw-r--r--. 1 boinc boinc      2773 Nov 21 23:50 pandaJob.out
[2025-11-23 01:38:07] -rw-------. 1 boinc boinc    989798 Nov 21 23:54 agis_schedconf.cvmfs.json
[2025-11-23 01:38:07] drwx------. 5 boinc boinc      4096 Nov 21 23:54 pilot3
[2025-11-23 01:38:07] -rw-r--r--. 1 boinc boinc       533 Nov 23 01:05 boinc_task_state.xml
[2025-11-23 01:38:07] -rw-------. 1 boinc boinc 914100086 Nov 23 01:34 HITS.47493068._005064.pool.root.1
[2025-11-23 01:38:07] -rw-------. 1 boinc boinc      1031 Nov 23 01:35 memory_monitor_summary.json
[2025-11-23 01:38:07] -rw-------. 1 boinc boinc   1526164 Nov 23 01:35 agis_ddmendpoints.agis.ALL.json
[2025-11-23 01:38:07] -rw-------. 1 boinc boinc   2585125 Nov 23 01:35 log.47493068._005064.job.log.tgz.1
[2025-11-23 01:38:07] -rw-------. 1 boinc boinc        95 Nov 23 01:37 pilot_heartbeat.json
[2025-11-23 01:38:07] -rw-------. 1 boinc boinc      7950 Nov 23 01:37 heartbeat.json
[2025-11-23 01:38:07] -rw-r--r--. 1 boinc boinc        29 Nov 23 01:37 wrapper_checkpoint.txt
[2025-11-23 01:38:07] -rw-r--r--. 1 boinc boinc      8192 Nov 23 01:37 boinc_mmap_file
[2025-11-23 01:38:07] -rw-------. 1 boinc boinc      5071 Nov 23 01:38 pilotlog.txt
[2025-11-23 01:38:07] -rw-------. 1 boinc boinc  12380486 Nov 23 01:38 log.47493068._005064.job.log.1
[2025-11-23 01:38:07] -rw-------. 1 boinc boinc       353 Nov 23 01:38 output.list
[2025-11-23 01:38:07] -rw-r--r--. 1 boinc boinc       620 Nov 23 01:38 runtime_log
[2025-11-23 01:38:07] -rw-------. 1 boinc boinc  14981120 Nov 23 01:38 result.tar.gz
[2025-11-23 01:38:07] -rw-------. 1 boinc boinc       662 Nov 23 01:38 XwxKDm8nef8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmH6FKDmBGyLmm.diag
[2025-11-23 01:38:07] -rw-r--r--. 1 boinc boinc      8717 Nov 23 01:38 runtime_log.err
[2025-11-23 01:38:07] -rw-r--r--. 1 boinc boinc     21495 Nov 23 01:38 stderr.txt
[2025-11-23 01:38:07] HITS file was successfully produced:
[2025-11-23 01:38:07] -rw-------. 1 boinc boinc 914100086 Nov 23 01:34 shared/HITS.pool.root.1
[2025-11-23 01:38:07]  *** Contents of shared directory: ***
[2025-11-23 01:38:07] total 1307592
[2025-11-23 01:38:07] -rw-r--r--. 2 boinc boinc 409278411 Nov 21 23:50 ATLAS.root_0
[2025-11-23 01:38:07] -rw-r--r--. 2 boinc boinc     15120 Nov 21 23:50 start_atlas.sh
[2025-11-23 01:38:07] -rw-r--r--. 2 boinc boinc    590095 Nov 21 23:50 input.tar.gz
[2025-11-23 01:38:07] -rw-------. 1 boinc boinc 914100086 Nov 23 01:34 HITS.pool.root.1
[2025-11-23 01:38:07] -rw-------. 1 boinc boinc  14981120 Nov 23 01:38 result.tar.gz
01:38:09 (7796): run_atlas exited; CPU time 340614.111257
01:38:09 (7796): called boinc_finish(0)

</stderr_txt>
]]>

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