Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:50:10 (24263): wrapper (7.7.26015): starting
21:50:10 (24263): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 21:50:10] Arguments: --nthreads 8
[2025-11-21 21:50:10] Threads: 8
[2025-11-21 21:50:10] Checking for CVMFS
[2025-11-21 21:50:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 21:50:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 21:50:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 21:50:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 21:50:10] 2.11.2.0 23903 76649 139132 153142 0 269 20091218 25165825 3651 130560 237 22434585 99.875 12661700 1968 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-21 21:50:10] CVMFS is ok
[2025-11-21 21:50:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 21:50:10] Checking for apptainer binary...
[2025-11-21 21:50:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 21:50:10] Running /usr/bin/apptainer --version
[2025-11-21 21:50:10] apptainer version 1.3.2-1.el7
[2025-11-21 21:50:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 21:50:12] cg-vwn444.simple-grid.lan
[2025-11-21 21:50:12] apptainer works
[2025-11-21 21:50:12] Set ATHENA_PROC_NUMBER=8
[2025-11-21 21:50:12] Set ATHENA_CORE_NUMBER=8
[2025-11-21 21:50:12] Starting ATLAS job with PandaID=6891589146
[2025-11-21 21:50:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 23:58:28]  *** The last 200 lines of the pilot log: ***
[2025-11-22 23:58:28] 2025-11-22 22:57:17,826 | INFO     | time since job start (94003s) is within the limit (172800.0s)
[2025-11-22 23:58:28] 2025-11-22 22:57:19,062 | INFO     | PID=28101 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 23:58:28] 2025-11-22 22:57:19,063 | INFO     | .. there are 9 such processes running
[2025-11-22 23:58:28] 2025-11-22 22:57:19,453 | INFO     | monitor loop #6270: job 0:6891589146 is in state 'finished'
[2025-11-22 23:58:28] 2025-11-22 22:57:19,453 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:58:28] 2025-11-22 22:57:20,064 | INFO     | time since job start (94006s) is within the limit (172800.0s)
[2025-11-22 23:58:28] 2025-11-22 22:57:21,963 | INFO     | monitor loop #6271: job 0:6891589146 is in state 'finished'
[2025-11-22 23:58:28] 2025-11-22 22:57:21,963 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:58:28] 2025-11-22 22:57:22,071 | INFO     | time since job start (94008s) is within the limit (172800.0s)
[2025-11-22 23:58:28] 2025-11-22 22:57:24,079 | INFO     | time since job start (94010s) is within the limit (172800.0s)
[2025-11-22 23:58:28] 2025-11-22 22:57:24,467 | INFO     | monitor loop #6272: job 0:6891589146 is in state 'finished'
[2025-11-22 23:58:28] 2025-11-22 22:57:24,467 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:58:28] 2025-11-22 22:57:26,087 | INFO     | time since job start (94012s) is within the limit (172800.0s)
[2025-11-22 23:58:28] 2025-11-22 22:57:26,980 | INFO     | monitor loop #6273: job 0:6891589146 is in state 'finished'
[2025-11-22 23:58:28] 2025-11-22 22:57:26,980 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:58:28] 2025-11-22 22:57:27,117 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 23:58:28] 2025-11-22 22:57:27,118 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-22 23:58:28] 2025-11-22 22:57:27,120 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6891589146/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 23:58:28] 2025-11-22 22:57:27,121 | INFO     | extracted standard info from prmon json
[2025-11-22 23:58:28] 2025-11-22 22:57:27,121 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 23:58:28] 2025-11-22 22:57:27,121 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 23:58:28] 2025-11-22 22:57:27,156 | INFO     | fitting pss+swap vs Time
[2025-11-22 23:58:28] 2025-11-22 22:57:27,168 | INFO     | sum of square deviations: 1130296624029.308
[2025-11-22 23:58:28] 2025-11-22 22:57:27,284 | INFO     | sum of deviations: 2436813642488.753
[2025-11-22 23:58:28] 2025-11-22 22:57:27,284 | INFO     | mean x: 1763805207.3664718
[2025-11-22 23:58:28] 2025-11-22 22:57:27,285 | INFO     | mean y: 2859101.53411306
[2025-11-22 23:58:28] 2025-11-22 22:57:27,285 | INFO     | intersect: -3799739703.619777
[2025-11-22 23:58:28] 2025-11-22 22:57:27,287 | INFO     | chi2: 19.3219396825996
[2025-11-22 23:58:28] 2025-11-22 22:57:27,289 | INFO     | sum of square deviations: 1119316436292.4436
[2025-11-22 23:58:28] 2025-11-22 22:57:27,359 | INFO     | sum of deviations: 2936172775762.5923
[2025-11-22 23:58:28] 2025-11-22 22:57:27,360 | INFO     | mean x: 1763805054.8709257
[2025-11-22 23:58:28] 2025-11-22 22:57:27,360 | INFO     | mean y: 2866035.7353324643
[2025-11-22 23:58:28] 2025-11-22 22:57:27,360 | INFO     | intersect: -4623918862.571462
[2025-11-22 23:58:28] 2025-11-22 22:57:27,362 | INFO     | chi2: 16.19890436509747
[2025-11-22 23:58:28] 2025-11-22 22:57:27,362 | INFO     | current chi2=16.19890436509747 (change=16.163156333184205 %)
[2025-11-22 23:58:28] 2025-11-22 22:57:27,362 | INFO     | right removable region: 1533
[2025-11-22 23:58:28] 2025-11-22 22:57:27,364 | INFO     | sum of square deviations: 1119315153462.4436
[2025-11-22 23:58:28] 2025-11-22 22:57:27,427 | INFO     | sum of deviations: 1907546870686.849
[2025-11-22 23:58:28] 2025-11-22 22:57:27,427 | INFO     | mean x: 1763805359.8709257
[2025-11-22 23:58:28] 2025-11-22 22:57:27,427 | INFO     | mean y: 2866449.155801825
[2025-11-22 23:58:28] 2025-11-22 22:57:27,427 | INFO     | intersect: -3003026381.218862
[2025-11-22 23:58:28] 2025-11-22 22:57:27,429 | INFO     | chi2: 16.239418504535603
[2025-11-22 23:58:28] 2025-11-22 22:57:27,429 | INFO     | current chi2=16.239418504535603 (change=15.953476869819463 %)
[2025-11-22 23:58:28] 2025-11-22 22:57:27,429 | INFO     | left removable region: 10
[2025-11-22 23:58:28] 2025-11-22 22:57:27,431 | INFO     | sum of square deviations: 1095408841911.667
[2025-11-22 23:58:28] 2025-11-22 22:57:27,500 | INFO     | sum of deviations: 2332346880762.3066
[2025-11-22 23:58:28] 2025-11-22 22:57:27,500 | INFO     | mean x: 1763805329.3768878
[2025-11-22 23:58:28] 2025-11-22 22:57:27,500 | INFO     | mean y: 2877463.1963230465
[2025-11-22 23:58:28] 2025-11-22 22:57:27,500 | INFO     | intersect: -3752620667.588212
[2025-11-22 23:58:28] 2025-11-22 22:57:27,502 | INFO     | chi2: 12.06844115706123
[2025-11-22 23:58:28] 2025-11-22 22:57:27,503 | INFO     | current memory leak: 2.13 B/s (using 1523 data points, chi2=12.07)
[2025-11-22 23:58:28] 2025-11-22 22:57:27,505 | INFO     | could have reported an average CPU frequency of 1999 MHz (52 samples)
[2025-11-22 23:58:28] 2025-11-22 22:57:27,505 | INFO     | ..............................
[2025-11-22 23:58:28] 2025-11-22 22:57:27,505 | INFO     | . Timing measurements:
[2025-11-22 23:58:28] 2025-11-22 22:57:27,505 | INFO     | . get job = 0 s
[2025-11-22 23:58:28] 2025-11-22 22:57:27,506 | INFO     | . initial setup = 2 s
[2025-11-22 23:58:28] 2025-11-22 22:57:27,506 | INFO     | . payload setup = 19 s
[2025-11-22 23:58:28] 2025-11-22 22:57:27,506 | INFO     | . stage-in = 0 s
[2025-11-22 23:58:28] 2025-11-22 22:57:27,506 | INFO     | . payload execution = 93866 s
[2025-11-22 23:58:28] 2025-11-22 22:57:27,506 | INFO     | . stage-out = 6 s
[2025-11-22 23:58:28] 2025-11-22 22:57:27,506 | INFO     | . log creation = 2 s
[2025-11-22 23:58:28] 2025-11-22 22:57:27,506 | INFO     | ..............................
[2025-11-22 23:58:28] 2025-11-22 22:57:27,696 | INFO     | 
[2025-11-22 23:58:28] 2025-11-22 22:57:27,696 | INFO     | job summary report
[2025-11-22 23:58:28] 2025-11-22 22:57:27,696 | INFO     | --------------------------------------------------
[2025-11-22 23:58:28] 2025-11-22 22:57:27,696 | INFO     | PanDA job id: 6891589146
[2025-11-22 23:58:28] 2025-11-22 22:57:27,696 | INFO     | task id: 47493068
[2025-11-22 23:58:28] 2025-11-22 22:57:27,696 | INFO     | errors: (none)
[2025-11-22 23:58:28] 2025-11-22 22:57:27,696 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 23:58:28] 2025-11-22 22:57:27,697 | INFO     | pilot state: finished 
[2025-11-22 23:58:28] 2025-11-22 22:57:27,697 | INFO     | transexitcode: 0
[2025-11-22 23:58:28] 2025-11-22 22:57:27,697 | INFO     | exeerrorcode: 0
[2025-11-22 23:58:28] 2025-11-22 22:57:27,697 | INFO     | exeerrordiag: 
[2025-11-22 23:58:28] 2025-11-22 22:57:27,697 | INFO     | exitcode: 0
[2025-11-22 23:58:28] 2025-11-22 22:57:27,697 | INFO     | exitmsg: OK
[2025-11-22 23:58:28] 2025-11-22 22:57:27,697 | INFO     | cpuconsumptiontime: 341476 s
[2025-11-22 23:58:28] 2025-11-22 22:57:27,697 | INFO     | nevents: 1000
[2025-11-22 23:58:28] 2025-11-22 22:57:27,697 | INFO     | neventsw: 0
[2025-11-22 23:58:28] 2025-11-22 22:57:27,697 | INFO     | pid: 7112
[2025-11-22 23:58:28] 2025-11-22 22:57:27,698 | INFO     | pgrp: 7112
[2025-11-22 23:58:28] 2025-11-22 22:57:27,698 | INFO     | corecount: 8
[2025-11-22 23:58:28] 2025-11-22 22:57:27,698 | INFO     | event service: False
[2025-11-22 23:58:28] 2025-11-22 22:57:27,698 | INFO     | sizes: {0: 2298569, 1: 2298824, 2: 2298824, 10: 2299114, 12: 2299142, 93890: 2362786, 93898: 2371780, 93899: 2371836, 93992: 2372082}
[2025-11-22 23:58:28] 2025-11-22 22:57:27,698 | INFO     | --------------------------------------------------
[2025-11-22 23:58:28] 2025-11-22 22:57:27,698 | INFO     | 
[2025-11-22 23:58:28] 2025-11-22 22:57:27,698 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-11-22 23:58:28] 2025-11-22 22:57:28,096 | INFO     | time since job start (94014s) is within the limit (172800.0s)
[2025-11-22 23:58:28] 2025-11-22 22:57:28,215 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 23:58:28] 2025-11-22 22:57:28,216 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 23:58:28] 2025-11-22 22:57:28,216 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 23:58:28] 2025-11-22 22:57:28,216 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 23:58:28] 2025-11-22 22:57:28,216 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 23:58:28] 2025-11-22 22:57:28,216 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 23:58:28] 2025-11-22 22:57:28,216 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 23:58:28] 2025-11-22 22:57:28,216 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 23:58:28] 2025-11-22 22:57:28,216 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 23:58:28] 2025-11-22 22:57:28,216 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 23:58:28] 2025-11-22 22:57:28,216 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 23:58:28] 2025-11-22 22:57:28,216 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 23:58:28] 2025-11-22 22:57:28,217 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 23:58:28] 2025-11-22 22:57:28,217 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 23:58:28] 2025-11-22 22:57:28,217 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 23:58:28] 2025-11-22 22:57:28,217 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 23:58:28] 2025-11-22 22:57:28,217 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 23:58:28] 2025-11-22 22:57:28,217 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 23:58:28] 2025-11-22 22:57:28,217 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 23:58:28] 2025-11-22 22:57:28,217 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 23:58:28] 2025-11-22 22:57:28,217 | INFO     | job 6891589146 has completed (purged errors)
[2025-11-22 23:58:28] 2025-11-22 22:57:28,218 | INFO     | overall cleanup function is called
[2025-11-22 23:58:28] 2025-11-22 22:57:29,240 | INFO     | --- collectZombieJob: --- 10, [7112]
[2025-11-22 23:58:28] 2025-11-22 22:57:29,240 | INFO     | zombie collector waiting for pid 7112
[2025-11-22 23:58:28] 2025-11-22 22:57:29,240 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 23:58:28] 2025-11-22 22:57:29,240 | INFO     | collected zombie processes
[2025-11-22 23:58:28] 2025-11-22 22:57:29,240 | INFO     | will attempt to kill all subprocesses of pid=7112
[2025-11-22 23:58:28] 2025-11-22 22:57:29,380 | INFO     | process IDs to be killed: [7112] (in reverse order)
[2025-11-22 23:58:28] 2025-11-22 22:57:30,257 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 23:58:28] 2025-11-22 22:57:30,258 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 23:58:28] 2025-11-22 22:57:30,261 | INFO     | did not find any defunct processes belonging to 7112
[2025-11-22 23:58:28] 2025-11-22 22:57:30,264 | INFO     | did not find any defunct processes belonging to 7112
[2025-11-22 23:58:28] 2025-11-22 22:57:30,311 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 23:58:28] 2025-11-22 22:57:30,311 | INFO     | ready for new job
[2025-11-22 23:58:28] 2025-11-22 22:57:30,312 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 23:58:28] 2025-11-22 22:57:30,322 | INFO     | ***************************************
[2025-11-22 23:58:28] 2025-11-22 22:57:30,322 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 23:58:28] 2025-11-22 22:57:30,322 | INFO     | ***************************************
[2025-11-22 23:58:28] 2025-11-22 22:57:30,322 | INFO     | 
[2025-11-22 23:58:28] 2025-11-22 22:57:30,323 | INFO     | pilot is running in a VM
[2025-11-22 23:58:28] 2025-11-22 22:57:30,323 | INFO     | architecture information:
[2025-11-22 23:58:28] 2025-11-22 22:57:30,337 | INFO     | executing command: cat /etc/os-release
[2025-11-22 23:58:28] 2025-11-22 22:57:30,613 | INFO     | cat /etc/os-release:
[2025-11-22 23:58:28] NAME="CentOS Linux"
[2025-11-22 23:58:28] VERSION="7 (Core)"
[2025-11-22 23:58:28] ID="centos"
[2025-11-22 23:58:28] ID_LIKE="rhel fedora"
[2025-11-22 23:58:28] VERSION_ID="7"
[2025-11-22 23:58:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 23:58:28] ANSI_COLOR="0;31"
[2025-11-22 23:58:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 23:58:28] HOME_URL="https://www.centos.org/"
[2025-11-22 23:58:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 23:58:28] 
[2025-11-22 23:58:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 23:58:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 23:58:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 23:58:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 23:58:28] 
[2025-11-22 23:58:28] 2025-11-22 22:57:30,614 | INFO     | ***************************************
[2025-11-22 23:58:28] 2025-11-22 22:57:31,117 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-11-22 23:58:28] 2025-11-22 22:57:31,196 | INFO     | sufficient remaining disk space (494916337664 B)
[2025-11-22 23:58:28] 2025-11-22 22:57:31,197 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 23:58:28] 2025-11-22 22:57:31,197 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 23:58:28] 2025-11-22 22:57:31,197 | INFO     | update_server=False
[2025-11-22 23:58:28] 2025-11-22 22:57:31,197 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 23:58:28] 2025-11-22 22:57:31,197 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 23:58:28] 2025-11-22 22:57:31,198 | INFO     | aborting loop
[2025-11-22 23:58:28] 2025-11-22 22:57:31,198 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 23:58:28] 2025-11-22 22:57:31,467 | INFO     | all data control threads have been joined
[2025-11-22 23:58:28] 2025-11-22 22:57:31,876 | INFO     | all payload control threads have been joined
[2025-11-22 23:58:28] 2025-11-22 22:57:32,203 | INFO     | [job] retrieve thread has finished
[2025-11-22 23:58:28] 2025-11-22 22:57:32,204 | INFO     | [job] job monitor thread has finished
[2025-11-22 23:58:28] 2025-11-22 22:57:32,473 | INFO     | [data] control thread has finished
[2025-11-22 23:58:28] 2025-11-22 22:57:32,493 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 23:58:28] 2025-11-22 22:57:32,567 | INFO     | [payload] failed_post thread has finished
[2025-11-22 23:58:28] 2025-11-22 22:57:32,622 | INFO     | all job control threads have been joined
[2025-11-22 23:58:28] 2025-11-22 22:57:32,640 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 23:58:28] 2025-11-22 22:57:32,857 | INFO     | [data] copytool_in thread has finished
[2025-11-22 23:58:28] 2025-11-22 22:57:32,882 | INFO     | [payload] control thread has finished
[2025-11-22 23:58:28] 2025-11-22 22:57:33,025 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 23:58:28] 2025-11-22 22:57:33,061 | INFO     | [payload] validate_post thread has finished
[2025-11-22 23:58:28] 2025-11-22 22:57:33,535 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 23:58:28] 2025-11-22 22:57:33,538 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 23:58:28] 2025-11-22 22:57:33,564 | INFO     | [job] validate thread has finished
[2025-11-22 23:58:28] 2025-11-22 22:57:33,609 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 23:58:28] 2025-11-22 22:57:33,628 | INFO     | [job] control thread has finished
[2025-11-22 23:58:28] 2025-11-22 22:57:33,646 | INFO     | [job] queue monitor thread has finished
[2025-11-22 23:58:28] 2025-11-22 22:57:34,500 | INFO     | [data] copytool_out thread has finished
[2025-11-22 23:58:28] 2025-11-22 22:57:35,209 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 23:58:28] 2025-11-22 22:58:01,287 | INFO     | PID=28101 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 23:58:28] 2025-11-22 22:58:01,287 | INFO     | .. there are 9 such processes running
[2025-11-22 23:58:28] 2025-11-22 22:58:01,289 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 23:58:28] 2025-11-22 22:58:01,289 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 23:58:28] 2025-11-22 22:58:01,289 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 23:58:28] 2025-11-22 22:58:18,016 | INFO     | [monitor] cgroup control has ended
[2025-11-22 23:58:28] 2025-11-22 22:58:18,894 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139751202887488)>', '<ExcThread(monitor, started 139750736369408)>']
[2025-11-22 23:58:28] 2025-11-22 22:58:19,396 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 23:58:28] 2025-11-22 22:58:19,396 | INFO     | [monitor] control thread has ended
[2025-11-22 23:58:28] 2025-11-22 22:58:23,920 | INFO     | all workflow threads have been joined
[2025-11-22 23:58:28] 2025-11-22 22:58:23,920 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 23:58:28] 2025-11-22 22:58:23,920 | INFO     | traces error code: 0
[2025-11-22 23:58:28] 2025-11-22 22:58:23,921 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 23:58:28] 2025-11-22 22:58:24,311 [wrapper] ==== pilot stdout END ====
[2025-11-22 23:58:28] 2025-11-22 22:58:24,412 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 23:58:28] 2025-11-22 22:58:24,510 [wrapper] pilotpid: 28101
[2025-11-22 23:58:28] 2025-11-22 22:58:24,577 [wrapper] Pilot exit status: 0
[2025-11-22 23:58:28] 2025-11-22 22:58:24,953 [wrapper] pandaids: 6891589146
[2025-11-22 23:58:28] 2025-11-22 22:58:25,909 [wrapper] cleanup supervisor_pilot 16522 28102
[2025-11-22 23:58:28] 2025-11-22 22:58:25,964 [wrapper] Test setup, not cleaning
[2025-11-22 23:58:28] 2025-11-22 22:58:26,026 [wrapper] apfmon messages muted
[2025-11-22 23:58:28] 2025-11-22 22:58:26,090 [wrapper] ==== wrapper stdout END ====
[2025-11-22 23:58:28] 2025-11-22 22:58:26,218 [wrapper] ==== wrapper stderr END ====
[2025-11-22 23:58:28]  *** Error codes and diagnostics ***
[2025-11-22 23:58:28]     "exeErrorCode": 0,
[2025-11-22 23:58:28]     "exeErrorDiag": "",
[2025-11-22 23:58:28]     "pilotErrorCode": 0,
[2025-11-22 23:58:28]     "pilotErrorDiag": "",
[2025-11-22 23:58:28]  *** Listing of results directory ***
[2025-11-22 23:58:28] total 1350576
[2025-11-22 23:58:28] -rw-r--r--. 1 boinc boinc    576529 Nov 18 18:24 pilot3.tar.gz
[2025-11-22 23:58:28] -rw-r--r--. 1 boinc boinc      5112 Nov 18 18:40 queuedata.json
[2025-11-22 23:58:28] -rwx------. 1 boinc boinc     36292 Nov 18 18:43 runpilot2-wrapper.sh
[2025-11-22 23:58:28] -rw-r--r--. 1 boinc boinc       100 Nov 21 21:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 23:58:28] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 21:50 run_atlas
[2025-11-22 23:58:28] -rw-r--r--. 1 boinc boinc       105 Nov 21 21:50 job.xml
[2025-11-22 23:58:28] -rw-r--r--. 1 boinc boinc      6391 Nov 21 21:50 init_data.xml
[2025-11-22 23:58:28] -rw-r--r--. 2 boinc boinc 410199922 Nov 21 21:50 EVNT.47493065._000520.pool.root.1
[2025-11-22 23:58:28] -rw-r--r--. 2 boinc boinc     15120 Nov 21 21:50 start_atlas.sh
[2025-11-22 23:58:28] drwxrwx--x. 2 boinc boinc        68 Nov 21 21:50 shared
[2025-11-22 23:58:28] -rw-r--r--. 2 boinc boinc    590097 Nov 21 21:50 input.tar.gz
[2025-11-22 23:58:28] -rw-r--r--. 1 boinc boinc         0 Nov 21 21:50 boinc_lockfile
[2025-11-22 23:58:28] -rw-r--r--. 1 boinc boinc      2773 Nov 21 21:50 pandaJob.out
[2025-11-22 23:58:28] -rw-------. 1 boinc boinc    989798 Nov 21 21:50 agis_schedconf.cvmfs.json
[2025-11-22 23:58:28] drwx------. 5 boinc boinc      4096 Nov 21 21:50 pilot3
[2025-11-22 23:58:28] -rw-r--r--. 1 boinc boinc       533 Nov 22 23:23 boinc_task_state.xml
[2025-11-22 23:58:28] -rw-------. 1 boinc boinc 938624139 Nov 22 23:54 HITS.47493068._005200.pool.root.1
[2025-11-22 23:58:28] -rw-------. 1 boinc boinc      1033 Nov 22 23:55 memory_monitor_summary.json
[2025-11-22 23:58:28] -rw-------. 1 boinc boinc   1526164 Nov 22 23:55 agis_ddmendpoints.agis.ALL.json
[2025-11-22 23:58:28] -rw-------. 1 boinc boinc   2597487 Nov 22 23:55 log.47493068._005200.job.log.tgz.1
[2025-11-22 23:58:28] -rw-------. 1 boinc boinc      7956 Nov 22 23:57 heartbeat.json
[2025-11-22 23:58:28] -rw-------. 1 boinc boinc        95 Nov 22 23:58 pilot_heartbeat.json
[2025-11-22 23:58:28] -rw-------. 1 boinc boinc      4884 Nov 22 23:58 pilotlog.txt
[2025-11-22 23:58:28] -rw-r--r--. 1 boinc boinc        29 Nov 22 23:58 wrapper_checkpoint.txt
[2025-11-22 23:58:28] -rw-r--r--. 1 boinc boinc      8192 Nov 22 23:58 boinc_mmap_file
[2025-11-22 23:58:28] -rw-------. 1 boinc boinc  12531731 Nov 22 23:58 log.47493068._005200.job.log.1
[2025-11-22 23:58:28] -rw-------. 1 boinc boinc       353 Nov 22 23:58 output.list
[2025-11-22 23:58:28] -rw-r--r--. 1 boinc boinc       620 Nov 22 23:58 runtime_log
[2025-11-22 23:58:28] -rw-------. 1 boinc boinc  15144960 Nov 22 23:58 result.tar.gz
[2025-11-22 23:58:28] -rw-------. 1 boinc boinc       662 Nov 22 23:58 WSIKDmiuef8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmR7FKDm1iBugm.diag
[2025-11-22 23:58:28] -rw-r--r--. 1 boinc boinc      8703 Nov 22 23:58 runtime_log.err
[2025-11-22 23:58:28] -rw-r--r--. 1 boinc boinc     21465 Nov 22 23:58 stderr.txt
[2025-11-22 23:58:28] HITS file was successfully produced:
[2025-11-22 23:58:28] -rw-------. 1 boinc boinc 938624139 Nov 22 23:54 shared/HITS.pool.root.1
[2025-11-22 23:58:28]  *** Contents of shared directory: ***
[2025-11-22 23:58:28] total 1332604
[2025-11-22 23:58:28] -rw-r--r--. 2 boinc boinc 410199922 Nov 21 21:50 ATLAS.root_0
[2025-11-22 23:58:28] -rw-r--r--. 2 boinc boinc     15120 Nov 21 21:50 start_atlas.sh
[2025-11-22 23:58:28] -rw-r--r--. 2 boinc boinc    590097 Nov 21 21:50 input.tar.gz
[2025-11-22 23:58:28] -rw-------. 1 boinc boinc 938624139 Nov 22 23:54 HITS.pool.root.1
[2025-11-22 23:58:28] -rw-------. 1 boinc boinc  15144960 Nov 22 23:58 result.tar.gz
23:58:29 (24263): run_atlas exited; CPU time 342004.751246
23:58:29 (24263): called boinc_finish(0)

</stderr_txt>
]]>

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