Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:38:47 (31548): wrapper (7.7.26015): starting
01:38:47 (31548): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 01:38:47] Arguments: --nthreads 8
[2025-11-22 01:38:47] Threads: 8
[2025-11-22 01:38:47] Checking for CVMFS
[2025-11-22 01:38:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 01:38:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 01:38:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 01:38:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 01:38:50] 2.11.2.0 32446 165706 138780 153153 1 118 20706594 25165825 4462 130560 2 56920694 99.903 24997856 2423 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-22 01:38:50] CVMFS is ok
[2025-11-22 01:38:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 01:38:50] Checking for apptainer binary...
[2025-11-22 01:38:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 01:38:50] Running /usr/bin/apptainer --version
[2025-11-22 01:38:50] apptainer version 1.3.2-1.el7
[2025-11-22 01:38:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 01:38:54] cg-vwn269.simple-grid.lan
[2025-11-22 01:38:54] apptainer works
[2025-11-22 01:38:54] Set ATHENA_PROC_NUMBER=8
[2025-11-22 01:38:54] Set ATHENA_CORE_NUMBER=8
[2025-11-22 01:38:54] Starting ATLAS job with PandaID=6891583768
[2025-11-22 01:38:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 03:41:25]  *** The last 200 lines of the pilot log: ***
[2025-11-23 03:41:25] 2025-11-23 02:40:04,373 | INFO     | 93459s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-23 03:41:25] 2025-11-23 02:40:05,109 | INFO     | monitor loop #6298: job 0:6891583768 is in state 'finished'
[2025-11-23 03:41:25] 2025-11-23 02:40:05,109 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 03:41:25] 2025-11-23 02:40:06,381 | INFO     | time since job start (93455s) is within the limit (172800.0s)
[2025-11-23 03:41:25] 2025-11-23 02:40:07,614 | INFO     | monitor loop #6299: job 0:6891583768 is in state 'finished'
[2025-11-23 03:41:25] 2025-11-23 02:40:07,614 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 03:41:25] 2025-11-23 02:40:08,391 | INFO     | time since job start (93457s) is within the limit (172800.0s)
[2025-11-23 03:41:25] 2025-11-23 02:40:10,119 | INFO     | monitor loop #6300: job 0:6891583768 is in state 'finished'
[2025-11-23 03:41:25] 2025-11-23 02:40:10,119 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 03:41:25] 2025-11-23 02:40:10,399 | INFO     | time since job start (93459s) is within the limit (172800.0s)
[2025-11-23 03:41:25] 2025-11-23 02:40:12,409 | INFO     | time since job start (93461s) is within the limit (172800.0s)
[2025-11-23 03:41:25] 2025-11-23 02:40:12,624 | INFO     | monitor loop #6301: job 0:6891583768 is in state 'finished'
[2025-11-23 03:41:25] 2025-11-23 02:40:12,624 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 03:41:25] 2025-11-23 02:40:13,605 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 03:41:25] 2025-11-23 02:40:13,607 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-23 03:41:25] 2025-11-23 02:40:13,608 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6891583768/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 03:41:25] 2025-11-23 02:40:13,609 | INFO     | extracted standard info from prmon json
[2025-11-23 03:41:25] 2025-11-23 02:40:13,609 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 03:41:25] 2025-11-23 02:40:13,610 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 03:41:25] 2025-11-23 02:40:13,660 | INFO     | fitting pss+swap vs Time
[2025-11-23 03:41:25] 2025-11-23 02:40:13,663 | INFO     | sum of square deviations: 1093255843025.191
[2025-11-23 03:41:25] 2025-11-23 02:40:13,739 | INFO     | sum of deviations: 3960723461881.798
[2025-11-23 03:41:25] 2025-11-23 02:40:13,739 | INFO     | mean x: 1763819081.8600526
[2025-11-23 03:41:25] 2025-11-23 02:40:13,739 | INFO     | mean y: 2842753.20565046
[2025-11-23 03:41:25] 2025-11-23 02:40:13,740 | INFO     | intersect: -6387243944.805209
[2025-11-23 03:41:25] 2025-11-23 02:40:13,742 | INFO     | chi2: 23.038248716297378
[2025-11-23 03:41:25] 2025-11-23 02:40:13,744 | INFO     | sum of square deviations: 1082517286963.4114
[2025-11-23 03:41:25] 2025-11-23 02:40:13,824 | INFO     | sum of deviations: 4457584423309.258
[2025-11-23 03:41:25] 2025-11-23 02:40:13,824 | INFO     | mean x: 1763818929.3645353
[2025-11-23 03:41:25] 2025-11-23 02:40:13,824 | INFO     | mean y: 2849807.804218853
[2025-11-23 03:41:25] 2025-11-23 02:40:13,824 | INFO     | intersect: -7260195207.512114
[2025-11-23 03:41:25] 2025-11-23 02:40:13,826 | INFO     | chi2: 19.909668526474547
[2025-11-23 03:41:25] 2025-11-23 02:40:13,826 | INFO     | current chi2=19.909668526474547 (change=13.57993929291013 %)
[2025-11-23 03:41:25] 2025-11-23 02:40:13,827 | INFO     | right removable region: 1516
[2025-11-23 03:41:25] 2025-11-23 02:40:13,829 | INFO     | sum of square deviations: 1082516024263.4095
[2025-11-23 03:41:25] 2025-11-23 02:40:13,890 | INFO     | sum of deviations: 3325620659353.419
[2025-11-23 03:41:25] 2025-11-23 02:40:13,890 | INFO     | mean x: 1763819234.3645353
[2025-11-23 03:41:25] 2025-11-23 02:40:13,891 | INFO     | mean y: 2851770.9630850363
[2025-11-23 03:41:25] 2025-11-23 02:40:13,891 | INFO     | intersect: -5415815069.70467
[2025-11-23 03:41:25] 2025-11-23 02:40:13,893 | INFO     | chi2: 18.39751747655084
[2025-11-23 03:41:25] 2025-11-23 02:40:13,893 | INFO     | current chi2=18.39751747655084 (change=20.143593798705982 %)
[2025-11-23 03:41:25] 2025-11-23 02:40:13,893 | INFO     | left removable region: 10
[2025-11-23 03:41:25] 2025-11-23 02:40:13,895 | INFO     | sum of square deviations: 1059137980087.2805
[2025-11-23 03:41:25] 2025-11-23 02:40:13,966 | INFO     | sum of deviations: 3381477057413.289
[2025-11-23 03:41:25] 2025-11-23 02:40:13,966 | INFO     | mean x: 1763819203.874502
[2025-11-23 03:41:25] 2025-11-23 02:40:13,966 | INFO     | mean y: 2868124.879814077
[2025-11-23 03:41:25] 2025-11-23 02:40:13,967 | INFO     | intersect: -5628422871.629535
[2025-11-23 03:41:25] 2025-11-23 02:40:13,968 | INFO     | chi2: 11.306924038644755
[2025-11-23 03:41:25] 2025-11-23 02:40:13,969 | INFO     | current memory leak: 3.19 B/s (using 1506 data points, chi2=11.31)
[2025-11-23 03:41:25] 2025-11-23 02:40:13,972 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-23 03:41:25] 2025-11-23 02:40:13,972 | INFO     | ..............................
[2025-11-23 03:41:25] 2025-11-23 02:40:13,972 | INFO     | . Timing measurements:
[2025-11-23 03:41:25] 2025-11-23 02:40:13,972 | INFO     | . get job = 0 s
[2025-11-23 03:41:25] 2025-11-23 02:40:13,972 | INFO     | . initial setup = 6 s
[2025-11-23 03:41:25] 2025-11-23 02:40:13,972 | INFO     | . payload setup = 161 s
[2025-11-23 03:41:25] 2025-11-23 02:40:13,972 | INFO     | . stage-in = 0 s
[2025-11-23 03:41:25] 2025-11-23 02:40:13,972 | INFO     | . payload execution = 92972 s
[2025-11-23 03:41:25] 2025-11-23 02:40:13,973 | INFO     | . stage-out = 7 s
[2025-11-23 03:41:25] 2025-11-23 02:40:13,973 | INFO     | . log creation = 2 s
[2025-11-23 03:41:25] 2025-11-23 02:40:13,973 | INFO     | ..............................
[2025-11-23 03:41:25] 2025-11-23 02:40:14,104 | INFO     | 
[2025-11-23 03:41:25] 2025-11-23 02:40:14,104 | INFO     | job summary report
[2025-11-23 03:41:25] 2025-11-23 02:40:14,105 | INFO     | --------------------------------------------------
[2025-11-23 03:41:25] 2025-11-23 02:40:14,105 | INFO     | PanDA job id: 6891583768
[2025-11-23 03:41:25] 2025-11-23 02:40:14,105 | INFO     | task id: 47493068
[2025-11-23 03:41:25] 2025-11-23 02:40:14,105 | INFO     | errors: (none)
[2025-11-23 03:41:25] 2025-11-23 02:40:14,105 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 03:41:25] 2025-11-23 02:40:14,105 | INFO     | pilot state: finished 
[2025-11-23 03:41:25] 2025-11-23 02:40:14,105 | INFO     | transexitcode: 0
[2025-11-23 03:41:25] 2025-11-23 02:40:14,106 | INFO     | exeerrorcode: 0
[2025-11-23 03:41:25] 2025-11-23 02:40:14,106 | INFO     | exeerrordiag: 
[2025-11-23 03:41:25] 2025-11-23 02:40:14,106 | INFO     | exitcode: 0
[2025-11-23 03:41:25] 2025-11-23 02:40:14,106 | INFO     | exitmsg: OK
[2025-11-23 03:41:25] 2025-11-23 02:40:14,106 | INFO     | cpuconsumptiontime: 336148 s
[2025-11-23 03:41:25] 2025-11-23 02:40:14,106 | INFO     | nevents: 1000
[2025-11-23 03:41:25] 2025-11-23 02:40:14,106 | INFO     | neventsw: 0
[2025-11-23 03:41:25] 2025-11-23 02:40:14,106 | INFO     | pid: 9547
[2025-11-23 03:41:25] 2025-11-23 02:40:14,106 | INFO     | pgrp: 9547
[2025-11-23 03:41:25] 2025-11-23 02:40:14,107 | INFO     | corecount: 8
[2025-11-23 03:41:25] 2025-11-23 02:40:14,107 | INFO     | event service: False
[2025-11-23 03:41:25] 2025-11-23 02:40:14,107 | INFO     | sizes: {0: 2298626, 1: 2298825, 12: 2298825, 23: 2298853, 33: 2298881, 44: 2298937, 55: 2299093, 66: 2299121, 76: 2299149, 87: 2299205, 98: 2299233, 99: 2299803, 1
[2025-11-23 03:41:25] 2025-11-23 02:40:14,113 | INFO     | --------------------------------------------------
[2025-11-23 03:41:25] 2025-11-23 02:40:14,113 | INFO     | 
[2025-11-23 03:41:25] 2025-11-23 02:40:14,114 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-23 03:41:25] 2025-11-23 02:40:14,415 | INFO     | time since job start (93463s) is within the limit (172800.0s)
[2025-11-23 03:41:25] 2025-11-23 02:40:14,556 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 03:41:25] 2025-11-23 02:40:14,556 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 03:41:25] 2025-11-23 02:40:14,556 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 03:41:25] 2025-11-23 02:40:14,557 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 03:41:25] 2025-11-23 02:40:14,557 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 03:41:25] 2025-11-23 02:40:14,557 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 03:41:25] 2025-11-23 02:40:14,557 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 03:41:25] 2025-11-23 02:40:14,557 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 03:41:25] 2025-11-23 02:40:14,557 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 03:41:25] 2025-11-23 02:40:14,557 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 03:41:25] 2025-11-23 02:40:14,557 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 03:41:25] 2025-11-23 02:40:14,557 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 03:41:25] 2025-11-23 02:40:14,557 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 03:41:25] 2025-11-23 02:40:14,557 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 03:41:25] 2025-11-23 02:40:14,558 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 03:41:25] 2025-11-23 02:40:14,558 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 03:41:25] 2025-11-23 02:40:14,558 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 03:41:25] 2025-11-23 02:40:14,558 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 03:41:25] 2025-11-23 02:40:14,558 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 03:41:25] 2025-11-23 02:40:14,558 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 03:41:25] 2025-11-23 02:40:14,558 | INFO     | job 6891583768 has completed (purged errors)
[2025-11-23 03:41:25] 2025-11-23 02:40:14,558 | INFO     | overall cleanup function is called
[2025-11-23 03:41:25] 2025-11-23 02:40:15,580 | INFO     | --- collectZombieJob: --- 10, [9547]
[2025-11-23 03:41:25] 2025-11-23 02:40:15,581 | INFO     | zombie collector waiting for pid 9547
[2025-11-23 03:41:25] 2025-11-23 02:40:15,581 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 03:41:25] 2025-11-23 02:40:15,581 | INFO     | collected zombie processes
[2025-11-23 03:41:25] 2025-11-23 02:40:15,581 | INFO     | will attempt to kill all subprocesses of pid=9547
[2025-11-23 03:41:25] 2025-11-23 02:40:15,691 | INFO     | process IDs to be killed: [9547] (in reverse order)
[2025-11-23 03:41:25] 2025-11-23 02:40:16,468 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 03:41:25] 2025-11-23 02:40:16,469 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 03:41:25] 2025-11-23 02:40:16,472 | INFO     | did not find any defunct processes belonging to 9547
[2025-11-23 03:41:25] 2025-11-23 02:40:16,476 | INFO     | did not find any defunct processes belonging to 9547
[2025-11-23 03:41:25] 2025-11-23 02:40:16,530 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 03:41:25] 2025-11-23 02:40:16,530 | INFO     | ready for new job
[2025-11-23 03:41:25] 2025-11-23 02:40:16,530 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 03:41:25] 2025-11-23 02:40:16,537 | INFO     | ***************************************
[2025-11-23 03:41:25] 2025-11-23 02:40:16,538 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 03:41:25] 2025-11-23 02:40:16,538 | INFO     | ***************************************
[2025-11-23 03:41:25] 2025-11-23 02:40:16,538 | INFO     | 
[2025-11-23 03:41:25] 2025-11-23 02:40:16,538 | INFO     | pilot is running in a VM
[2025-11-23 03:41:25] 2025-11-23 02:40:16,538 | INFO     | architecture information:
[2025-11-23 03:41:25] 2025-11-23 02:40:16,550 | INFO     | executing command: cat /etc/os-release
[2025-11-23 03:41:25] 2025-11-23 02:40:16,816 | INFO     | cat /etc/os-release:
[2025-11-23 03:41:25] NAME="CentOS Linux"
[2025-11-23 03:41:25] VERSION="7 (Core)"
[2025-11-23 03:41:25] ID="centos"
[2025-11-23 03:41:25] ID_LIKE="rhel fedora"
[2025-11-23 03:41:25] VERSION_ID="7"
[2025-11-23 03:41:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 03:41:25] ANSI_COLOR="0;31"
[2025-11-23 03:41:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 03:41:25] HOME_URL="https://www.centos.org/"
[2025-11-23 03:41:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 03:41:25] 
[2025-11-23 03:41:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 03:41:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 03:41:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 03:41:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 03:41:25] 
[2025-11-23 03:41:25] 2025-11-23 02:40:16,817 | INFO     | ***************************************
[2025-11-23 03:41:25] 2025-11-23 02:40:17,320 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-23 03:41:25] 2025-11-23 02:40:17,607 | INFO     | sufficient remaining disk space (495151218688 B)
[2025-11-23 03:41:25] 2025-11-23 02:40:17,607 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 03:41:25] 2025-11-23 02:40:17,607 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 03:41:25] 2025-11-23 02:40:17,608 | INFO     | update_server=False
[2025-11-23 03:41:25] 2025-11-23 02:40:17,608 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 03:41:25] 2025-11-23 02:40:17,609 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 03:41:25] 2025-11-23 02:40:17,725 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 03:41:25] 2025-11-23 02:40:17,726 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 03:41:25] 2025-11-23 02:40:17,726 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 03:41:25] 2025-11-23 02:40:17,726 | INFO     | will abort loop
[2025-11-23 03:41:25] 2025-11-23 02:40:18,312 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 03:41:25] 2025-11-23 02:40:18,462 | INFO     | all data control threads have been joined
[2025-11-23 03:41:25] 2025-11-23 02:40:18,469 | INFO     | all job control threads have been joined
[2025-11-23 03:41:25] 2025-11-23 02:40:18,614 | INFO     | [job] retrieve thread has finished
[2025-11-23 03:41:25] 2025-11-23 02:40:18,725 | INFO     | all payload control threads have been joined
[2025-11-23 03:41:25] 2025-11-23 02:40:18,733 | INFO     | [job] job monitor thread has finished
[2025-11-23 03:41:25] 2025-11-23 02:40:18,786 | INFO     | [payload] validate_post thread has finished
[2025-11-23 03:41:25] 2025-11-23 02:40:18,854 | INFO     | [payload] failed_post thread has finished
[2025-11-23 03:41:25] 2025-11-23 02:40:18,975 | INFO     | [job] validate thread has finished
[2025-11-23 03:41:25] 2025-11-23 02:40:19,040 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 03:41:25] 2025-11-23 02:40:19,059 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 03:41:25] 2025-11-23 02:40:19,118 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 03:41:25] 2025-11-23 02:40:19,468 | INFO     | [data] control thread has finished
[2025-11-23 03:41:25] 2025-11-23 02:40:19,475 | INFO     | [job] control thread has finished
[2025-11-23 03:41:25] 2025-11-23 02:40:19,593 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 03:41:25] 2025-11-23 02:40:19,616 | INFO     | [data] copytool_out thread has finished
[2025-11-23 03:41:25] 2025-11-23 02:40:19,732 | INFO     | [payload] control thread has finished
[2025-11-23 03:41:25] 2025-11-23 02:40:19,951 | INFO     | [data] copytool_in thread has finished
[2025-11-23 03:41:25] 2025-11-23 02:40:20,102 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 03:41:25] 2025-11-23 02:40:20,125 | INFO     | [job] queue monitor thread has finished
[2025-11-23 03:41:25] 2025-11-23 02:40:22,321 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 03:41:25] 2025-11-23 02:40:47,569 | INFO     | PID=2940 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-23 03:41:25] 2025-11-23 02:40:47,569 | INFO     | .. there are 9 such processes running
[2025-11-23 03:41:25] 2025-11-23 02:40:47,571 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 03:41:25] 2025-11-23 02:40:47,571 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 03:41:25] 2025-11-23 02:40:47,571 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 03:41:25] 2025-11-23 02:41:14,815 | INFO     | [monitor] cgroup control has ended
[2025-11-23 03:41:25] 2025-11-23 02:41:16,311 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139699527046976)>', '<ExcThread(monitor, started 139699062544128)>']
[2025-11-23 03:41:25] 2025-11-23 02:41:16,743 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 03:41:25] 2025-11-23 02:41:16,744 | INFO     | [monitor] control thread has ended
[2025-11-23 03:41:25] 2025-11-23 02:41:21,337 | INFO     | all workflow threads have been joined
[2025-11-23 03:41:25] 2025-11-23 02:41:21,338 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 03:41:25] 2025-11-23 02:41:21,338 | INFO     | traces error code: 0
[2025-11-23 03:41:25] 2025-11-23 02:41:21,338 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 03:41:25] 2025-11-23 02:41:21,768 [wrapper] ==== pilot stdout END ====
[2025-11-23 03:41:25] 2025-11-23 02:41:21,878 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 03:41:25] 2025-11-23 02:41:21,991 [wrapper] pilotpid: 2940
[2025-11-23 03:41:25] 2025-11-23 02:41:22,100 [wrapper] Pilot exit status: 0
[2025-11-23 03:41:25] 2025-11-23 02:41:22,396 [wrapper] pandaids: 6891583768
[2025-11-23 03:41:25] 2025-11-23 02:41:22,636 [wrapper] cleanup supervisor_pilot 24982 2941
[2025-11-23 03:41:25] 2025-11-23 02:41:22,653 [wrapper] Test setup, not cleaning
[2025-11-23 03:41:25] 2025-11-23 02:41:22,731 [wrapper] apfmon messages muted
[2025-11-23 03:41:25] 2025-11-23 02:41:22,855 [wrapper] ==== wrapper stdout END ====
[2025-11-23 03:41:25] 2025-11-23 02:41:22,983 [wrapper] ==== wrapper stderr END ====
[2025-11-23 03:41:25]  *** Error codes and diagnostics ***
[2025-11-23 03:41:25]     "exeErrorCode": 0,
[2025-11-23 03:41:25]     "exeErrorDiag": "",
[2025-11-23 03:41:25]     "pilotErrorCode": 0,
[2025-11-23 03:41:25]     "pilotErrorDiag": "",
[2025-11-23 03:41:25]  *** Listing of results directory ***
[2025-11-23 03:41:25] total 1323936
[2025-11-23 03:41:25] -rw-r--r--. 1 boinc boinc    576529 Nov 18 17:45 pilot3.tar.gz
[2025-11-23 03:41:25] -rw-r--r--. 1 boinc boinc      5112 Nov 18 18:10 queuedata.json
[2025-11-23 03:41:25] -rwx------. 1 boinc boinc     36292 Nov 18 18:11 runpilot2-wrapper.sh
[2025-11-23 03:41:25] -rw-r--r--. 1 boinc boinc       100 Nov 22 01:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 03:41:25] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 01:38 run_atlas
[2025-11-23 03:41:25] -rw-r--r--. 1 boinc boinc       105 Nov 22 01:38 job.xml
[2025-11-23 03:41:25] -rw-r--r--. 1 boinc boinc      6392 Nov 22 01:38 init_data.xml
[2025-11-23 03:41:25] -rw-r--r--. 2 boinc boinc 409038298 Nov 22 01:38 EVNT.47493065._000443.pool.root.1
[2025-11-23 03:41:25] -rw-r--r--. 2 boinc boinc     15120 Nov 22 01:38 start_atlas.sh
[2025-11-23 03:41:25] drwxrwx--x. 2 boinc boinc        68 Nov 22 01:38 shared
[2025-11-23 03:41:25] -rw-r--r--. 2 boinc boinc    590102 Nov 22 01:38 input.tar.gz
[2025-11-23 03:41:25] -rw-r--r--. 1 boinc boinc         0 Nov 22 01:38 boinc_lockfile
[2025-11-23 03:41:25] -rw-r--r--. 1 boinc boinc      2773 Nov 22 01:38 pandaJob.out
[2025-11-23 03:41:25] -rw-------. 1 boinc boinc    989798 Nov 22 01:42 agis_schedconf.cvmfs.json
[2025-11-23 03:41:25] drwx------. 5 boinc boinc      4096 Nov 22 01:42 pilot3
[2025-11-23 03:41:25] -rw-r--r--. 1 boinc boinc       533 Nov 23 03:14 boinc_task_state.xml
[2025-11-23 03:41:25] -rw-------. 1 boinc boinc 912751231 Nov 23 03:36 HITS.47493068._004427.pool.root.1
[2025-11-23 03:41:25] -rw-------. 1 boinc boinc      1031 Nov 23 03:38 memory_monitor_summary.json
[2025-11-23 03:41:25] -rw-------. 1 boinc boinc   1526164 Nov 23 03:38 agis_ddmendpoints.agis.ALL.json
[2025-11-23 03:41:25] -rw-------. 1 boinc boinc   2573802 Nov 23 03:38 log.47493068._004427.job.log.tgz.1
[2025-11-23 03:41:25] -rw-------. 1 boinc boinc      8640 Nov 23 03:40 heartbeat.json
[2025-11-23 03:41:25] -rw-------. 1 boinc boinc        95 Nov 23 03:40 pilot_heartbeat.json
[2025-11-23 03:41:25] -rw-r--r--. 1 boinc boinc      8192 Nov 23 03:41 boinc_mmap_file
[2025-11-23 03:41:25] -rw-r--r--. 1 boinc boinc        29 Nov 23 03:41 wrapper_checkpoint.txt
[2025-11-23 03:41:25] -rw-------. 1 boinc boinc      5070 Nov 23 03:41 pilotlog.txt
[2025-11-23 03:41:25] -rw-------. 1 boinc boinc  12432516 Nov 23 03:41 log.47493068._004427.job.log.1
[2025-11-23 03:41:25] -rw-------. 1 boinc boinc       353 Nov 23 03:41 output.list
[2025-11-23 03:41:25] -rw-r--r--. 1 boinc boinc       620 Nov 23 03:41 runtime_log
[2025-11-23 03:41:25] -rw-------. 1 boinc boinc  15022080 Nov 23 03:41 result.tar.gz
[2025-11-23 03:41:25] -rw-r--r--. 1 boinc boinc      8717 Nov 23 03:41 runtime_log.err
[2025-11-23 03:41:25] -rw-------. 1 boinc boinc       662 Nov 23 03:41 KPSMDmDQef8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8yFKDm3m68Em.diag
[2025-11-23 03:41:25] -rw-r--r--. 1 boinc boinc     21422 Nov 23 03:41 stderr.txt
[2025-11-23 03:41:25] HITS file was successfully produced:
[2025-11-23 03:41:25] -rw-------. 1 boinc boinc 912751231 Nov 23 03:36 shared/HITS.pool.root.1
[2025-11-23 03:41:25]  *** Contents of shared directory: ***
[2025-11-23 03:41:25] total 1306080
[2025-11-23 03:41:25] -rw-r--r--. 2 boinc boinc 409038298 Nov 22 01:38 ATLAS.root_0
[2025-11-23 03:41:25] -rw-r--r--. 2 boinc boinc     15120 Nov 22 01:38 start_atlas.sh
[2025-11-23 03:41:25] -rw-r--r--. 2 boinc boinc    590102 Nov 22 01:38 input.tar.gz
[2025-11-23 03:41:25] -rw-------. 1 boinc boinc 912751231 Nov 23 03:36 HITS.pool.root.1
[2025-11-23 03:41:25] -rw-------. 1 boinc boinc  15022080 Nov 23 03:41 result.tar.gz
03:41:26 (31548): run_atlas exited; CPU time 336665.659692
03:41:26 (31548): called boinc_finish(0)

</stderr_txt>
]]>

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