Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:02:27 (2864411): wrapper (7.7.26015): starting
14:02:27 (2864411): wrapper: running run_atlas (--nthreads 12)
[2025-11-18 14:02:27] Arguments: --nthreads 12
[2025-11-18 14:02:27] Threads: 12
[2025-11-18 14:02:27] Checking for CVMFS
[2025-11-18 14:02:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-18 14:02:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-18 14:02:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-18 14:02:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-18 14:02:28] 2.11.3.0 1603625 17398 252264 153014 1 448 31880344 45568001 10385 130560 0 187505739 99.838 91517126 20933 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-18 14:02:28] CVMFS is ok
[2025-11-18 14:02:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-18 14:02:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-18 14:02:28] Further information can be found at the LHC@home message board.
[2025-11-18 14:02:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-18 14:02:28] Checking for apptainer binary...
[2025-11-18 14:02:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-18 14:02:28] Running /usr/bin/apptainer --version
[2025-11-18 14:02:28] apptainer version 1.4.1-1.el9
[2025-11-18 14:02:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-18 14:02:28] wns0171.triumf.lcg
[2025-11-18 14:02:28] apptainer works
[2025-11-18 14:02:28] Set ATHENA_PROC_NUMBER=12
[2025-11-18 14:02:28] Set ATHENA_CORE_NUMBER=12
[2025-11-18 14:02:28] Starting ATLAS job with PandaID=6891572081
[2025-11-18 14:02:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-18 14:06:43]  *** The last 200 lines of the pilot log: ***
[2025-11-18 14:06:43] 2025-11-18 22:05:46,848 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-18 14:06:43] 2025-11-18 22:05:46,848 | WARNING  | wrong length of table data, x=[1763503381.0], y=[1739.0] (must be same and length>=4)
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | could have reported an average CPU frequency of 2921 MHz (4 samples)
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | ..............................
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | . Timing measurements:
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | . get job = 0 s
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | . initial setup = 2 s
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | . payload setup = 4 s
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | . stage-in = 0 s
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | . payload execution = 45 s
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | . stage-out = 0 s
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | . log creation = 0 s
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | ..............................
[2025-11-18 14:06:43] 2025-11-18 22:05:46,850 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 14:06:43] 2025-11-18 22:05:46,850 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891572081/pilotlog.txt
[2025-11-18 14:06:43] 2025-11-18 22:05:46,863 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-18 14:06:43] - Log from pilotlog.txt -
[2025-11-18 14:06:43] 2025-11-18 22:05:46,847 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891572081/memory_monitor_summary.json (trf name=prmon)
[2025-11-18 14:06:43] 2025-11-18 22:05:46,847 | INFO     | extracted standard info from prmon json
[2025-11-18 14:06:43] 2025-11-18 22:05:46,847 | INFO     | extracted standard memory fields from prmon json
[2025-11-18 14:06:43] 2025-11-18 22:05:46,847 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-18 14:06:43] 2025-11-18 22:05:46,848 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-18 14:06:43] 2025-11-18 22:05:46,848 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-18 14:06:43] 2025-11-18 22:05:46,848 | WARNING  | wrong length of table data, x=[1763503381.0], y=[1739.0] (must be same and length>=4)
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | could have reported an average CPU frequency of 2921 MHz (4 samples)
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | ..............................
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | . Timing measurements:
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | . get job = 0 s
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | . initial setup = 2 s
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | . payload setup = 4 s
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | . stage-in = 0 s
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | . payload execution = 45 s
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | . stage-out = 0 s
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | . log creation = 0 s
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | ..............................
[2025-11-18 14:06:43] 2025-11-18 22:05:46,850 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 14:06:43] 2025-11-18 22:05:46,850 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891572081/pilotlog.txt
[2025-11-18 14:06:43] 2025-11-18 22:05:46,863 | WARNING  | 
[2025-11-18 14:06:43] [begin log extracts]
[2025-11-18 14:06:43] - Log from pilotlog.txt -
[2025-11-18 14:06:43] 2025-11-18 22:05:46,847 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891572081/memory_monitor_summary.json (trf name=prmon)
[2025-11-18 14:06:43] 2025-11-18 22:05:46,847 | INFO     | extracted standard info from prmon json
[2025-11-18 14:06:43] 2025-11-18 22:05:46,847 | INFO     | extracted standard memory fields from prmon json
[2025-11-18 14:06:43] 2025-11-18 22:05:46,847 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-18 14:06:43] 2025-11-18 22:05:46,848 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-18 14:06:43] 2025-11-18 22:05:46,848 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-18 14:06:43] 2025-11-18 22:05:46,848 | WARNING  | wrong length of table data, x=[1763503381.0], y=[1739.0] (must be same and length>=4)
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | could have reported an average CPU frequency of 2921 MHz (4 samples)
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | ..............................
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | . Timing measurements:
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | . get job = 0 s
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | . initial setup = 2 s
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | . payload setup = 4 s
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | . stage-in = 0 s
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | . payload execution = 45 s
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | . stage-out = 0 s
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | . log creation = 0 s
[2025-11-18 14:06:43] 2025-11-18 22:05:46,849 | INFO     | ..............................
[2025-11-18 14:06:43] 2025-11-18 22:05:46,850 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 14:06:43] 2025-11-18 22:05:46,850 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891572081/pilotlog.txt
[2025-11-18 14:06:43] [end log extracts]
[2025-11-18 14:06:43] 2025-11-18 22:05:46,863 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-18 14:06:43] 2025-11-18 22:05:46,864 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-18 14:06:43] 2025-11-18 22:05:46,914 | INFO     | 
[2025-11-18 14:06:43] 2025-11-18 22:05:46,914 | INFO     | job summary report
[2025-11-18 14:06:43] 2025-11-18 22:05:46,914 | INFO     | --------------------------------------------------
[2025-11-18 14:06:43] 2025-11-18 22:05:46,914 | INFO     | PanDA job id: 6891572081
[2025-11-18 14:06:43] 2025-11-18 22:05:46,914 | INFO     | task id: 47493068
[2025-11-18 14:06:43] 2025-11-18 22:05:46,915 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-18 14:03:37,072 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-18 14:06:43] 2025-11-18 22:05:46,915 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-18 14:06:43] 2025-11-18 22:05:46,915 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-18 14:06:43] 2025-11-18 22:05:46,915 | INFO     | pilot state: failed 
[2025-11-18 14:06:43] 2025-11-18 22:05:46,915 | INFO     | transexitcode: 65
[2025-11-18 14:06:43] 2025-11-18 22:05:46,915 | INFO     | exeerrorcode: 65
[2025-11-18 14:06:43] 2025-11-18 22:05:46,915 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-18 14:06:43] 2025-11-18 22:05:46,915 | INFO     | exitcode: 65
[2025-11-18 14:06:43] 2025-11-18 22:05:46,915 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-18 14:06:43] 2025-11-18 22:05:46,915 | INFO     | cpuconsumptiontime: 32 s
[2025-11-18 14:06:43] 2025-11-18 22:05:46,915 | INFO     | nevents: 0
[2025-11-18 14:06:43] 2025-11-18 22:05:46,915 | INFO     | neventsw: 0
[2025-11-18 14:06:43] 2025-11-18 22:05:46,915 | INFO     | pid: 2874617
[2025-11-18 14:06:43] 2025-11-18 22:05:46,915 | INFO     | pgrp: 2874617
[2025-11-18 14:06:43] 2025-11-18 22:05:46,915 | INFO     | corecount: 12
[2025-11-18 14:06:43] 2025-11-18 22:05:46,915 | INFO     | event service: False
[2025-11-18 14:06:43] 2025-11-18 22:05:46,916 | INFO     | sizes: {0: 2297197, 4: 2297459, 11: 2297487, 53: 2322957, 55: 2327247, 56: 2327275, 176: 2327629}
[2025-11-18 14:06:43] 2025-11-18 22:05:46,916 | INFO     | --------------------------------------------------
[2025-11-18 14:06:43] 2025-11-18 22:05:46,916 | INFO     | 
[2025-11-18 14:06:43] 2025-11-18 22:05:46,916 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-18 14:06:43] 2025-11-18 22:05:46,928 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-18 14:06:43] 2025-11-18 22:05:46,928 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-18 14:06:43] 2025-11-18 22:05:46,929 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-18 14:06:43] 2025-11-18 22:05:46,929 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-18 14:06:43] 2025-11-18 22:05:46,929 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-18 14:06:43] 2025-11-18 22:05:46,929 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-18 14:06:43] 2025-11-18 22:05:46,929 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-18 14:06:43] 2025-11-18 22:05:46,929 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-18 14:06:43] 2025-11-18 22:05:46,929 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-18 14:06:43] 2025-11-18 22:05:46,929 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-18 14:06:43] 2025-11-18 22:05:46,929 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-18 14:06:43] 2025-11-18 22:05:46,929 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-18 14:06:43] 2025-11-18 22:05:46,929 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-18 14:06:43] 2025-11-18 22:05:46,929 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-18 14:06:43] 2025-11-18 22:05:46,929 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-18 14:06:43] 2025-11-18 22:05:46,929 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-18 14:06:43] 2025-11-18 22:05:46,929 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-18 14:06:43] 2025-11-18 22:05:46,929 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-18 14:06:43] 2025-11-18 22:05:46,929 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-18 14:06:43] 2025-11-18 22:05:46,929 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-18 14:06:43] 2025-11-18 22:05:46,929 | INFO     | job 6891572081 has completed (purged errors)
[2025-11-18 14:06:43] 2025-11-18 22:05:46,930 | INFO     | overall cleanup function is called
[2025-11-18 14:06:43] 2025-11-18 22:05:47,937 | INFO     | --- collectZombieJob: --- 10, [2874617]
[2025-11-18 14:06:43] 2025-11-18 22:05:47,937 | INFO     | zombie collector waiting for pid 2874617
[2025-11-18 14:06:43] 2025-11-18 22:05:47,937 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-18 14:06:43] 2025-11-18 22:05:47,937 | INFO     | collected zombie processes
[2025-11-18 14:06:43] 2025-11-18 22:05:47,937 | INFO     | will attempt to kill all subprocesses of pid=2874617
[2025-11-18 14:06:43] 2025-11-18 22:05:48,057 | INFO     | process IDs to be killed: [2874617] (in reverse order)
[2025-11-18 14:06:43] 2025-11-18 22:05:48,103 | WARNING  | found no corresponding commands to process id(s)
[2025-11-18 14:06:43] 2025-11-18 22:05:48,104 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-18 14:06:43] 2025-11-18 22:05:48,109 | INFO     | did not find any defunct processes belonging to 2874617
[2025-11-18 14:06:43] 2025-11-18 22:05:48,113 | INFO     | did not find any defunct processes belonging to 2874617
[2025-11-18 14:06:43] 2025-11-18 22:05:48,114 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-18 14:06:43] 2025-11-18 22:05:48,114 | INFO     | ready for new job
[2025-11-18 14:06:43] 2025-11-18 22:05:48,114 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-18 14:06:43] 2025-11-18 22:05:48,115 | INFO     | ***************************************
[2025-11-18 14:06:43] 2025-11-18 22:05:48,115 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-18 14:06:43] 2025-11-18 22:05:48,116 | INFO     | ***************************************
[2025-11-18 14:06:43] 2025-11-18 22:05:48,116 | INFO     | 
[2025-11-18 14:06:43] 2025-11-18 22:05:48,117 | INFO     | architecture information:
[2025-11-18 14:06:43] 2025-11-18 22:05:48,117 | INFO     | executing command: cat /etc/os-release
[2025-11-18 14:06:43] 2025-11-18 22:05:48,129 | INFO     | cat /etc/os-release:
[2025-11-18 14:06:43] NAME="CentOS Linux"
[2025-11-18 14:06:43] VERSION="7 (Core)"
[2025-11-18 14:06:43] ID="centos"
[2025-11-18 14:06:43] ID_LIKE="rhel fedora"
[2025-11-18 14:06:43] VERSION_ID="7"
[2025-11-18 14:06:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-18 14:06:43] ANSI_COLOR="0;31"
[2025-11-18 14:06:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-18 14:06:43] HOME_URL="https://www.centos.org/"
[2025-11-18 14:06:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-18 14:06:43] 
[2025-11-18 14:06:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-18 14:06:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-18 14:06:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-18 14:06:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-18 14:06:43] 
[2025-11-18 14:06:43] 2025-11-18 22:05:48,130 | INFO     | ***************************************
[2025-11-18 14:06:43] 2025-11-18 22:05:48,633 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-18 14:06:43] 2025-11-18 22:05:48,645 | INFO     | sufficient remaining disk space (2624465141760 B)
[2025-11-18 14:06:43] 2025-11-18 22:05:48,645 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-18 14:06:43] 2025-11-18 22:05:48,645 | INFO     | current server update state: UPDATING_FINAL
[2025-11-18 14:06:43] 2025-11-18 22:05:48,645 | INFO     | update_server=False
[2025-11-18 14:06:43] 2025-11-18 22:05:48,645 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-18 14:06:43] 2025-11-18 22:05:48,645 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-18 14:06:43] 2025-11-18 22:05:48,867 | INFO     | all data control threads have been joined
[2025-11-18 14:06:43] 2025-11-18 22:05:49,015 | INFO     | all payload control threads have been joined
[2025-11-18 14:06:43] 2025-11-18 22:05:49,199 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-18 14:06:43] 2025-11-18 22:05:49,199 | INFO     | aborting loop
[2025-11-18 14:06:43] 2025-11-18 22:05:49,211 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-18 14:06:43] 2025-11-18 22:05:49,305 | INFO     | all job control threads have been joined
[2025-11-18 14:06:43] 2025-11-18 22:05:49,651 | INFO     | [job] queue monitor thread has finished
[2025-11-18 14:06:43] 2025-11-18 22:05:49,652 | INFO     | [job] retrieve thread has finished
[2025-11-18 14:06:43] 2025-11-18 22:05:49,873 | INFO     | [data] control thread has finished
[2025-11-18 14:06:43] 2025-11-18 22:05:49,957 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-18 14:06:43] 2025-11-18 22:05:50,021 | INFO     | [payload] control thread has finished
[2025-11-18 14:06:43] 2025-11-18 22:05:50,205 | INFO     | [job] job monitor thread has finished
[2025-11-18 14:06:43] 2025-11-18 22:05:50,298 | INFO     | [data] copytool_in thread has finished
[2025-11-18 14:06:43] 2025-11-18 22:05:50,299 | INFO     | [payload] validate_post thread has finished
[2025-11-18 14:06:43] 2025-11-18 22:05:50,311 | INFO     | [job] control thread has finished
[2025-11-18 14:06:43] 2025-11-18 22:05:50,462 | INFO     | [payload] execute_payloads thread has finished
[2025-11-18 14:06:43] 2025-11-18 22:05:50,794 | INFO     | [job] validate thread has finished
[2025-11-18 14:06:43] 2025-11-18 22:05:50,881 | INFO     | [job] create_data_payload thread has finished
[2025-11-18 14:06:43] 2025-11-18 22:05:50,976 | INFO     | [payload] failed_post thread has finished
[2025-11-18 14:06:43] 2025-11-18 22:05:51,095 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-18 14:06:43] 2025-11-18 22:05:51,095 | INFO     | [payload] validate_pre thread has finished
[2025-11-18 14:06:43] 2025-11-18 22:05:51,218 | INFO     | [data] copytool_out thread has finished
[2025-11-18 14:06:43] 2025-11-18 22:05:53,963 | INFO     | [data] queue_monitor thread has finished
[2025-11-18 14:06:43] 2025-11-18 22:06:19,517 | INFO     | PID=2868047 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-18 14:06:43] 2025-11-18 22:06:19,517 | INFO     | .. there are 19 such processes running
[2025-11-18 14:06:43] 2025-11-18 22:06:19,517 | INFO     | found 0 job(s) in 20 queues
[2025-11-18 14:06:43] 2025-11-18 22:06:19,517 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-18 14:06:43] 2025-11-18 22:06:19,517 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-18 14:06:43] 2025-11-18 22:06:36,866 | INFO     | [monitor] cgroup control has ended
[2025-11-18 14:06:43] 2025-11-18 22:06:38,011 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140226512709440)>', '<ExcThread(monitor, started 140225984591616)>']
[2025-11-18 14:06:43] 2025-11-18 22:06:38,615 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-18 14:06:43] 2025-11-18 22:06:38,615 | INFO     | [monitor] control thread has ended
[2025-11-18 14:06:43] 2025-11-18 22:06:43,036 | INFO     | all workflow threads have been joined
[2025-11-18 14:06:43] 2025-11-18 22:06:43,036 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-18 14:06:43] 2025-11-18 22:06:43,037 | INFO     | traces error code: 0
[2025-11-18 14:06:43] 2025-11-18 22:06:43,037 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-18 14:06:43] 2025-11-18 22:06:43,124 [wrapper] ==== pilot stdout END ====
[2025-11-18 14:06:43] 2025-11-18 22:06:43,125 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-18 14:06:43] 2025-11-18 22:06:43,127 [wrapper] pilotpid: 2868047
[2025-11-18 14:06:43] 2025-11-18 22:06:43,128 [wrapper] Pilot exit status: 0
[2025-11-18 14:06:43] 2025-11-18 22:06:43,134 [wrapper] pandaids: 6891572081
[2025-11-18 14:06:43] 2025-11-18 22:06:43,160 [wrapper] cleanup supervisor_pilot 2868053 2868048
[2025-11-18 14:06:43] 2025-11-18 22:06:43,162 [wrapper] Test setup, not cleaning
[2025-11-18 14:06:43] 2025-11-18 22:06:43,164 [wrapper] apfmon messages muted
[2025-11-18 14:06:43] 2025-11-18 22:06:43,165 [wrapper] ==== wrapper stdout END ====
[2025-11-18 14:06:43] 2025-11-18 22:06:43,167 [wrapper] ==== wrapper stderr END ====
[2025-11-18 14:06:43]  *** Error codes and diagnostics ***
[2025-11-18 14:06:43]     "exeErrorCode": 65,
[2025-11-18 14:06:43]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-18 14:06:43]     "pilotErrorCode": 1305,
[2025-11-18 14:06:43]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-18 14:06:43]  *** Listing of results directory ***
[2025-11-18 14:06:43] total 405324
[2025-11-18 14:06:43] -rw-r--r--. 1 boinc boinc    576529 Nov 18 07:47 pilot3.tar.gz
[2025-11-18 14:06:43] -rw-r--r--. 1 boinc boinc      5112 Nov 18 08:16 queuedata.json
[2025-11-18 14:06:43] -rwx------. 1 boinc boinc     36292 Nov 18 08:17 runpilot2-wrapper.sh
[2025-11-18 14:06:43] -rw-r--r--. 1 boinc boinc       100 Nov 18 14:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-18 14:06:43] -rwxr-xr-x. 1 boinc boinc      7986 Nov 18 14:02 run_atlas
[2025-11-18 14:06:43] -rw-r--r--. 1 boinc boinc       105 Nov 18 14:02 job.xml
[2025-11-18 14:06:43] -rw-r--r--. 2 boinc boinc 410848921 Nov 18 14:02 EVNT.47493065._000326.pool.root.1
[2025-11-18 14:06:43] -rw-r--r--. 2 boinc boinc     15120 Nov 18 14:02 start_atlas.sh
[2025-11-18 14:06:43] drwxrwx--x. 2 boinc boinc      4096 Nov 18 14:02 shared
[2025-11-18 14:06:43] -rw-r--r--. 2 boinc boinc    590101 Nov 18 14:02 input.tar.gz
[2025-11-18 14:06:43] -rw-r--r--. 1 boinc boinc      6628 Nov 18 14:02 init_data.xml
[2025-11-18 14:06:43] -rw-r--r--. 1 boinc boinc         0 Nov 18 14:02 boinc_lockfile
[2025-11-18 14:06:43] -rw-r--r--. 1 boinc boinc      2773 Nov 18 14:02 pandaJob.out
[2025-11-18 14:06:43] -rw-------. 1 boinc boinc    992790 Nov 18 14:02 agis_schedconf.cvmfs.json
[2025-11-18 14:06:43] -rw-------. 1 boinc boinc   1525063 Nov 18 14:02 agis_ddmendpoints.agis.ALL.json
[2025-11-18 14:06:43] drwx------. 5 boinc boinc      4096 Nov 18 14:02 pilot3
[2025-11-18 14:06:43] -rw-r--r--. 1 boinc boinc       523 Nov 18 14:03 boinc_task_state.xml
[2025-11-18 14:06:43] -rw-------. 1 boinc boinc       964 Nov 18 14:03 memory_monitor_summary.json
[2025-11-18 14:06:43] -rw-------. 1 boinc boinc     47341 Nov 18 14:03 log.47493068._003254.job.log.tgz.1
[2025-11-18 14:06:43] -rw-------. 1 boinc boinc        95 Nov 18 14:05 pilot_heartbeat.json
[2025-11-18 14:06:43] -rw-------. 1 boinc boinc     10319 Nov 18 14:05 heartbeat.json
[2025-11-18 14:06:43] -rw-r--r--. 1 boinc boinc        23 Nov 18 14:06 wrapper_checkpoint.txt
[2025-11-18 14:06:43] -rw-r--r--. 1 boinc boinc      8192 Nov 18 14:06 boinc_mmap_file
[2025-11-18 14:06:43] -rw-------. 1 boinc boinc      4823 Nov 18 14:06 pilotlog.txt
[2025-11-18 14:06:43] -rw-------. 1 boinc boinc     92415 Nov 18 14:06 log.47493068._003254.job.log.1
[2025-11-18 14:06:43] -rw-------. 1 boinc boinc       186 Nov 18 14:06 output.list
[2025-11-18 14:06:43] -rw-r--r--. 1 boinc boinc       620 Nov 18 14:06 runtime_log
[2025-11-18 14:06:43] -rw-------. 1 boinc boinc    163840 Nov 18 14:06 result.tar.gz
[2025-11-18 14:06:43] -rw-------. 1 boinc boinc       645 Nov 18 14:06 zHyKDmWZdf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm6SFKDmUFuxSo.diag
[2025-11-18 14:06:43] -rw-r--r--. 1 boinc boinc      8528 Nov 18 14:06 runtime_log.err
[2025-11-18 14:06:43] -rw-r--r--. 1 boinc boinc     22393 Nov 18 14:06 stderr.txt
[2025-11-18 14:06:43] No HITS result produced
[2025-11-18 14:06:43]  *** Contents of shared directory: ***
[2025-11-18 14:06:43] total 401980
[2025-11-18 14:06:43] -rw-r--r--. 2 boinc boinc 410848921 Nov 18 14:02 ATLAS.root_0
[2025-11-18 14:06:43] -rw-r--r--. 2 boinc boinc     15120 Nov 18 14:02 start_atlas.sh
[2025-11-18 14:06:43] -rw-r--r--. 2 boinc boinc    590101 Nov 18 14:02 input.tar.gz
[2025-11-18 14:06:43] -rw-------. 1 boinc boinc    163840 Nov 18 14:06 result.tar.gz
14:06:44 (2864411): run_atlas exited; CPU time 33.183854
14:06:44 (2864411): called boinc_finish(0)

</stderr_txt>
]]>

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