Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:19:05 (4133483): wrapper (7.7.26015): starting
13:19:05 (4133483): wrapper: running run_atlas (--nthreads 8)
[2025-11-18 13:19:05] Arguments: --nthreads 8
[2025-11-18 13:19:05] Threads: 8
[2025-11-18 13:19:05] Checking for CVMFS
[2025-11-18 13:19:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-18 13:19:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-18 13:19:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-18 13:19:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-18 13:19:05] 2.11.3.0 2562703 17396 215864 153013 1 446 28045199 45568001 11844 130560 0 130604264 99.832 59341062 18149 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-18 13:19:05] CVMFS is ok
[2025-11-18 13:19:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-18 13:19:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-18 13:19:05] Further information can be found at the LHC@home message board.
[2025-11-18 13:19:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-18 13:19:05] Checking for apptainer binary...
[2025-11-18 13:19:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-18 13:19:05] Running /usr/bin/apptainer --version
[2025-11-18 13:19:05] apptainer version 1.4.1-1.el9
[2025-11-18 13:19:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-18 13:19:05] wns0015.triumf.lcg
[2025-11-18 13:19:05] apptainer works
[2025-11-18 13:19:06] Set ATHENA_PROC_NUMBER=8
[2025-11-18 13:19:06] Set ATHENA_CORE_NUMBER=8
[2025-11-18 13:19:06] Starting ATLAS job with PandaID=6891568323
[2025-11-18 13:19:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-18 13:25:36]  *** The last 200 lines of the pilot log: ***
[2025-11-18 13:25:36] 2025-11-18 21:24:51,992 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-18 13:25:36] 2025-11-18 21:24:51,992 | INFO     | ..............................
[2025-11-18 13:25:36] 2025-11-18 21:24:51,992 | INFO     | . Timing measurements:
[2025-11-18 13:25:36] 2025-11-18 21:24:51,993 | INFO     | . get job = 0 s
[2025-11-18 13:25:36] 2025-11-18 21:24:51,993 | INFO     | . initial setup = 5 s
[2025-11-18 13:25:36] 2025-11-18 21:24:51,993 | INFO     | . payload setup = 16 s
[2025-11-18 13:25:36] 2025-11-18 21:24:51,993 | INFO     | . stage-in = 0 s
[2025-11-18 13:25:36] 2025-11-18 21:24:51,993 | INFO     | . payload execution = 132 s
[2025-11-18 13:25:36] 2025-11-18 21:24:51,993 | INFO     | . stage-out = 1 s
[2025-11-18 13:25:36] 2025-11-18 21:24:51,993 | INFO     | . log creation = 0 s
[2025-11-18 13:25:36] 2025-11-18 21:24:51,993 | INFO     | ..............................
[2025-11-18 13:25:36] 2025-11-18 21:24:51,993 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 13:25:36] 2025-11-18 21:24:51,993 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891568323/pilotlog.txt
[2025-11-18 13:25:36] 2025-11-18 21:24:52,017 | INFO     | monitor loop #79: job 0:6891568323 is in state 'failed'
[2025-11-18 13:25:36] 2025-11-18 21:24:52,018 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-11-18 13:25:36] 2025-11-18 21:24:52,083 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-18 13:25:36] - Log from pilotlog.txt -
[2025-11-18 13:25:36] 2025-11-18 21:24:51,990 | INFO     | extracted standard memory fields from prmon json
[2025-11-18 13:25:36] 2025-11-18 21:24:51,991 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-18 13:25:36] 2025-11-18 21:24:51,991 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-18 13:25:36] 2025-11-18 21:24:51,991 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-18 13:25:36] 2025-11-18 21:24:51,992 | WARNING  | wrong length of table data, x=[1763500829.0, 1763500890.0, 1763500951.0], y=[3646.0, 701786.0, 255799.0] (must be same and length>=4)
[2025-11-18 13:25:36] 2025-11-18 21:24:51,992 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-18 13:25:36] 2025-11-18 21:24:51,992 | INFO     | ..............................
[2025-11-18 13:25:36] 2025-11-18 21:24:51,992 | INFO     | . Timing measurements:
[2025-11-18 13:25:36] 2025-11-18 21:24:51,993 | INFO     | . get job = 0 s
[2025-11-18 13:25:36] 2025-11-18 21:24:51,993 | INFO     | . initial setup = 5 s
[2025-11-18 13:25:36] 2025-11-18 21:24:51,993 | INFO     | . payload setup = 16 s
[2025-11-18 13:25:36] 2025-11-18 21:24:51,993 | INFO     | . stage-in = 0 s
[2025-11-18 13:25:36] 2025-11-18 21:24:51,993 | INFO     | . payload execution = 132 s
[2025-11-18 13:25:36] 2025-11-18 21:24:51,993 | INFO     | . stage-out = 1 s
[2025-11-18 13:25:36] 2025-11-18 21:24:51,993 | INFO     | . log creation = 0 s
[2025-11-18 13:25:36] 2025-11-18 21:24:51,993 | INFO     | ..............................
[2025-11-18 13:25:36] 2025-11-18 21:24:51,993 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 13:25:36] 2025-11-18 21:24:51,993 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891568323/pilotlog.txt
[2025-11-18 13:25:36] 2025-11-18 21:24:52,017 | INFO     | monitor loop #79: job 0:6891568323 is in state 'failed'
[2025-11-18 13:25:36] 2025-11-18 21:24:52,018 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-11-18 13:25:36] 2025-11-18 21:24:52,085 | WARNING  | 
[2025-11-18 13:25:36] [begin log extracts]
[2025-11-18 13:25:36] - Log from pilotlog.txt -
[2025-11-18 13:25:36] 2025-11-18 21:24:51,990 | INFO     | extracted standard memory fields from prmon json
[2025-11-18 13:25:36] 2025-11-18 21:24:51,991 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-18 13:25:36] 2025-11-18 21:24:51,991 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-18 13:25:36] 2025-11-18 21:24:51,991 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-18 13:25:36] 2025-11-18 21:24:51,992 | WARNING  | wrong length of table data, x=[1763500829.0, 1763500890.0, 1763500951.0], y=[3646.0, 701786.0, 255799.0] (must be same and length>=4)
[2025-11-18 13:25:36] 2025-11-18 21:24:51,992 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-18 13:25:36] 2025-11-18 21:24:51,992 | INFO     | ..............................
[2025-11-18 13:25:36] 2025-11-18 21:24:51,992 | INFO     | . Timing measurements:
[2025-11-18 13:25:36] 2025-11-18 21:24:51,993 | INFO     | . get job = 0 s
[2025-11-18 13:25:36] 2025-11-18 21:24:51,993 | INFO     | . initial setup = 5 s
[2025-11-18 13:25:36] 2025-11-18 21:24:51,993 | INFO     | . payload setup = 16 s
[2025-11-18 13:25:36] 2025-11-18 21:24:51,993 | INFO     | . stage-in = 0 s
[2025-11-18 13:25:36] 2025-11-18 21:24:51,993 | INFO     | . payload execution = 132 s
[2025-11-18 13:25:36] 2025-11-18 21:24:51,993 | INFO     | . stage-out = 1 s
[2025-11-18 13:25:36] 2025-11-18 21:24:51,993 | INFO     | . log creation = 0 s
[2025-11-18 13:25:36] 2025-11-18 21:24:51,993 | INFO     | ..............................
[2025-11-18 13:25:36] 2025-11-18 21:24:51,993 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 13:25:36] 2025-11-18 21:24:51,993 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891568323/pilotlog.txt
[2025-11-18 13:25:36] 2025-11-18 21:24:52,017 | INFO     | monitor loop #79: job 0:6891568323 is in state 'failed'
[2025-11-18 13:25:36] 2025-11-18 21:24:52,018 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-11-18 13:25:36] [end log extracts]
[2025-11-18 13:25:36] 2025-11-18 21:24:52,085 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-18 13:25:36] 2025-11-18 21:24:52,086 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-18 13:25:36] 2025-11-18 21:24:52,289 | INFO     | 
[2025-11-18 13:25:36] 2025-11-18 21:24:52,289 | INFO     | job summary report
[2025-11-18 13:25:36] 2025-11-18 21:24:52,289 | INFO     | --------------------------------------------------
[2025-11-18 13:25:36] 2025-11-18 21:24:52,290 | INFO     | PanDA job id: 6891568323
[2025-11-18 13:25:36] 2025-11-18 21:24:52,290 | INFO     | task id: 47493068
[2025-11-18 13:25:36] 2025-11-18 21:24:52,290 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-18 13:22:28,512 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-18 13:25:36] 2025-11-18 21:24:52,290 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-18 13:25:36] 2025-11-18 21:24:52,290 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-18 13:25:36] 2025-11-18 21:24:52,290 | INFO     | pilot state: failed 
[2025-11-18 13:25:36] 2025-11-18 21:24:52,290 | INFO     | transexitcode: 65
[2025-11-18 13:25:36] 2025-11-18 21:24:52,290 | INFO     | exeerrorcode: 65
[2025-11-18 13:25:36] 2025-11-18 21:24:52,290 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-18 13:25:36] 2025-11-18 21:24:52,290 | INFO     | exitcode: 65
[2025-11-18 13:25:36] 2025-11-18 21:24:52,290 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-18 13:25:36] 2025-11-18 21:24:52,290 | INFO     | cpuconsumptiontime: 49 s
[2025-11-18 13:25:36] 2025-11-18 21:24:52,290 | INFO     | nevents: 0
[2025-11-18 13:25:36] 2025-11-18 21:24:52,291 | INFO     | neventsw: 0
[2025-11-18 13:25:36] 2025-11-18 21:24:52,291 | INFO     | pid: 4143870
[2025-11-18 13:25:36] 2025-11-18 21:24:52,291 | INFO     | pgrp: 4143870
[2025-11-18 13:25:36] 2025-11-18 21:24:52,291 | INFO     | corecount: 8
[2025-11-18 13:25:36] 2025-11-18 21:24:52,291 | INFO     | event service: False
[2025-11-18 13:25:36] 2025-11-18 21:24:52,291 | INFO     | sizes: {0: 2296372, 1: 2297225, 2: 2297225, 13: 2297571, 24: 2297571, 152: 2323108, 155: 2327398, 157: 2327426, 288: 2327592}
[2025-11-18 13:25:36] 2025-11-18 21:24:52,291 | INFO     | --------------------------------------------------
[2025-11-18 13:25:36] 2025-11-18 21:24:52,291 | INFO     | 
[2025-11-18 13:25:36] 2025-11-18 21:24:52,291 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-18 13:25:36] 2025-11-18 21:24:52,477 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-18 13:25:36] 2025-11-18 21:24:52,478 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-18 13:25:36] 2025-11-18 21:24:52,478 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-18 13:25:36] 2025-11-18 21:24:52,478 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-18 13:25:36] 2025-11-18 21:24:52,478 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-18 13:25:36] 2025-11-18 21:24:52,478 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-18 13:25:36] 2025-11-18 21:24:52,478 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-18 13:25:36] 2025-11-18 21:24:52,478 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-18 13:25:36] 2025-11-18 21:24:52,478 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-18 13:25:36] 2025-11-18 21:24:52,478 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-18 13:25:36] 2025-11-18 21:24:52,478 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-18 13:25:36] 2025-11-18 21:24:52,478 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-18 13:25:36] 2025-11-18 21:24:52,478 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-18 13:25:36] 2025-11-18 21:24:52,478 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-18 13:25:36] 2025-11-18 21:24:52,479 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-18 13:25:36] 2025-11-18 21:24:52,479 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-18 13:25:36] 2025-11-18 21:24:52,479 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-18 13:25:36] 2025-11-18 21:24:52,479 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-18 13:25:36] 2025-11-18 21:24:52,479 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-18 13:25:36] 2025-11-18 21:24:52,479 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-18 13:25:36] 2025-11-18 21:24:52,479 | INFO     | job 6891568323 has completed (purged errors)
[2025-11-18 13:25:36] 2025-11-18 21:24:52,479 | INFO     | overall cleanup function is called
[2025-11-18 13:25:36] 2025-11-18 21:24:53,517 | INFO     | --- collectZombieJob: --- 10, [4143870]
[2025-11-18 13:25:36] 2025-11-18 21:24:53,517 | INFO     | zombie collector waiting for pid 4143870
[2025-11-18 13:25:36] 2025-11-18 21:24:53,517 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-18 13:25:36] 2025-11-18 21:24:53,517 | INFO     | collected zombie processes
[2025-11-18 13:25:36] 2025-11-18 21:24:53,518 | INFO     | will attempt to kill all subprocesses of pid=4143870
[2025-11-18 13:25:36] 2025-11-18 21:24:53,734 | INFO     | process IDs to be killed: [4143870] (in reverse order)
[2025-11-18 13:25:36] 2025-11-18 21:24:53,793 | WARNING  | found no corresponding commands to process id(s)
[2025-11-18 13:25:36] 2025-11-18 21:24:53,793 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-18 13:25:36] 2025-11-18 21:24:53,799 | INFO     | did not find any defunct processes belonging to 4143870
[2025-11-18 13:25:36] 2025-11-18 21:24:53,805 | INFO     | did not find any defunct processes belonging to 4143870
[2025-11-18 13:25:36] 2025-11-18 21:24:53,807 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-18 13:25:36] 2025-11-18 21:24:53,807 | INFO     | ready for new job
[2025-11-18 13:25:36] 2025-11-18 21:24:53,807 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-18 13:25:36] 2025-11-18 21:24:53,808 | INFO     | ***************************************
[2025-11-18 13:25:36] 2025-11-18 21:24:53,809 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-18 13:25:36] 2025-11-18 21:24:53,809 | INFO     | ***************************************
[2025-11-18 13:25:36] 2025-11-18 21:24:53,809 | INFO     | 
[2025-11-18 13:25:36] 2025-11-18 21:24:53,831 | INFO     | architecture information:
[2025-11-18 13:25:36] 2025-11-18 21:24:53,832 | INFO     | executing command: cat /etc/os-release
[2025-11-18 13:25:36] 2025-11-18 21:24:53,869 | INFO     | cat /etc/os-release:
[2025-11-18 13:25:36] NAME="CentOS Linux"
[2025-11-18 13:25:36] VERSION="7 (Core)"
[2025-11-18 13:25:36] ID="centos"
[2025-11-18 13:25:36] ID_LIKE="rhel fedora"
[2025-11-18 13:25:36] VERSION_ID="7"
[2025-11-18 13:25:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-18 13:25:36] ANSI_COLOR="0;31"
[2025-11-18 13:25:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-18 13:25:36] HOME_URL="https://www.centos.org/"
[2025-11-18 13:25:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-18 13:25:36] 
[2025-11-18 13:25:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-18 13:25:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-18 13:25:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-18 13:25:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-18 13:25:36] 
[2025-11-18 13:25:36] 2025-11-18 21:24:53,869 | INFO     | ***************************************
[2025-11-18 13:25:36] 2025-11-18 21:24:54,384 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-18 13:25:36] 2025-11-18 21:24:54,535 | INFO     | sufficient remaining disk space (1326832418816 B)
[2025-11-18 13:25:36] 2025-11-18 21:24:54,536 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-18 13:25:36] 2025-11-18 21:24:54,536 | INFO     | current server update state: UPDATING_FINAL
[2025-11-18 13:25:36] 2025-11-18 21:24:54,539 | INFO     | update_server=False
[2025-11-18 13:25:36] 2025-11-18 21:24:54,539 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-18 13:25:36] 2025-11-18 21:24:54,539 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-18 13:25:36] 2025-11-18 21:24:54,887 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-18 13:25:36] 2025-11-18 21:24:54,992 | INFO     | all data control threads have been joined
[2025-11-18 13:25:36] 2025-11-18 21:24:55,037 | INFO     | all job control threads have been joined
[2025-11-18 13:25:36] 2025-11-18 21:24:55,529 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-18 13:25:36] 2025-11-18 21:24:55,529 | INFO     | aborting loop
[2025-11-18 13:25:36] 2025-11-18 21:24:55,545 | INFO     | [job] retrieve thread has finished
[2025-11-18 13:25:36] 2025-11-18 21:24:55,619 | INFO     | [payload] validate_post thread has finished
[2025-11-18 13:25:36] 2025-11-18 21:24:55,840 | INFO     | all payload control threads have been joined
[2025-11-18 13:25:36] 2025-11-18 21:24:55,998 | INFO     | [data] control thread has finished
[2025-11-18 13:25:36] 2025-11-18 21:24:56,043 | INFO     | [job] control thread has finished
[2025-11-18 13:25:36] 2025-11-18 21:24:56,088 | INFO     | [job] validate thread has finished
[2025-11-18 13:25:36] 2025-11-18 21:24:56,094 | INFO     | [data] copytool_in thread has finished
[2025-11-18 13:25:36] 2025-11-18 21:24:56,095 | INFO     | [job] create_data_payload thread has finished
[2025-11-18 13:25:36] 2025-11-18 21:24:56,439 | INFO     | [payload] validate_pre thread has finished
[2025-11-18 13:25:36] 2025-11-18 21:24:56,479 | INFO     | [payload] failed_post thread has finished
[2025-11-18 13:25:36] 2025-11-18 21:24:56,535 | INFO     | [job] job monitor thread has finished
[2025-11-18 13:25:36] 2025-11-18 21:24:56,581 | INFO     | [payload] execute_payloads thread has finished
[2025-11-18 13:25:36] 2025-11-18 21:24:56,823 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-18 13:25:36] 2025-11-18 21:24:56,846 | INFO     | [payload] control thread has finished
[2025-11-18 13:25:36] 2025-11-18 21:24:56,894 | INFO     | [data] copytool_out thread has finished
[2025-11-18 13:25:36] 2025-11-18 21:24:57,307 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-18 13:25:36] 2025-11-18 21:24:58,322 | INFO     | [job] queue monitor thread has finished
[2025-11-18 13:25:36] 2025-11-18 21:24:58,548 | INFO     | [data] queue_monitor thread has finished
[2025-11-18 13:25:36] 2025-11-18 21:25:24,881 | INFO     | PID=4137119 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-18 13:25:36] 2025-11-18 21:25:24,881 | INFO     | .. there are 19 such processes running
[2025-11-18 13:25:36] 2025-11-18 21:25:24,881 | INFO     | found 0 job(s) in 20 queues
[2025-11-18 13:25:36] 2025-11-18 21:25:24,881 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-18 13:25:36] 2025-11-18 21:25:24,881 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-18 13:25:36] 2025-11-18 21:25:29,044 | INFO     | [monitor] cgroup control has ended
[2025-11-18 13:25:36] 2025-11-18 21:25:30,493 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139734214412096)>', '<ExcThread(monitor, started 139733522962176)>']
[2025-11-18 13:25:36] 2025-11-18 21:25:30,925 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-18 13:25:36] 2025-11-18 21:25:30,925 | INFO     | [monitor] control thread has ended
[2025-11-18 13:25:36] 2025-11-18 21:25:35,519 | INFO     | all workflow threads have been joined
[2025-11-18 13:25:36] 2025-11-18 21:25:35,519 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-18 13:25:36] 2025-11-18 21:25:35,520 | INFO     | traces error code: 0
[2025-11-18 13:25:36] 2025-11-18 21:25:35,520 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-18 13:25:36] 2025-11-18 21:25:35,854 [wrapper] ==== pilot stdout END ====
[2025-11-18 13:25:36] 2025-11-18 21:25:35,880 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-18 13:25:36] 2025-11-18 21:25:35,912 [wrapper] pilotpid: 4137119
[2025-11-18 13:25:36] 2025-11-18 21:25:35,947 [wrapper] Pilot exit status: 0
[2025-11-18 13:25:36] 2025-11-18 21:25:36,082 [wrapper] pandaids: 6891568323
[2025-11-18 13:25:36] 2025-11-18 21:25:36,404 [wrapper] cleanup supervisor_pilot 4137125 4137120
[2025-11-18 13:25:36] 2025-11-18 21:25:36,435 [wrapper] Test setup, not cleaning
[2025-11-18 13:25:36] 2025-11-18 21:25:36,473 [wrapper] apfmon messages muted
[2025-11-18 13:25:36] 2025-11-18 21:25:36,528 [wrapper] ==== wrapper stdout END ====
[2025-11-18 13:25:36] 2025-11-18 21:25:36,542 [wrapper] ==== wrapper stderr END ====
[2025-11-18 13:25:36]  *** Error codes and diagnostics ***
[2025-11-18 13:25:36]     "exeErrorCode": 65,
[2025-11-18 13:25:36]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-18 13:25:36]     "pilotErrorCode": 1305,
[2025-11-18 13:25:36]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-18 13:25:36]  *** Listing of results directory ***
[2025-11-18 13:25:36] total 404948
[2025-11-18 13:25:36] -rw-r--r--. 1 boinc boinc    576529 Nov 18 07:15 pilot3.tar.gz
[2025-11-18 13:25:36] -rw-r--r--. 1 boinc boinc      5112 Nov 18 07:32 queuedata.json
[2025-11-18 13:25:36] -rwx------. 1 boinc boinc     36292 Nov 18 07:33 runpilot2-wrapper.sh
[2025-11-18 13:25:36] -rw-r--r--. 1 boinc boinc       100 Nov 18 13:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-18 13:25:36] -rwxr-xr-x. 1 boinc boinc      7986 Nov 18 13:19 run_atlas
[2025-11-18 13:25:36] -rw-r--r--. 1 boinc boinc       105 Nov 18 13:19 job.xml
[2025-11-18 13:25:36] -rw-r--r--. 2 boinc boinc 410435181 Nov 18 13:19 EVNT.47493065._000186.pool.root.1
[2025-11-18 13:25:36] -rw-r--r--. 2 boinc boinc     15120 Nov 18 13:19 start_atlas.sh
[2025-11-18 13:25:36] drwxrwx--x. 2 boinc boinc      4096 Nov 18 13:19 shared
[2025-11-18 13:25:36] -rw-r--r--. 2 boinc boinc    590104 Nov 18 13:19 input.tar.gz
[2025-11-18 13:25:36] -rw-r--r--. 1 boinc boinc      6445 Nov 18 13:19 init_data.xml
[2025-11-18 13:25:36] -rw-r--r--. 1 boinc boinc         0 Nov 18 13:19 boinc_lockfile
[2025-11-18 13:25:36] -rw-r--r--. 1 boinc boinc      2773 Nov 18 13:19 pandaJob.out
[2025-11-18 13:25:36] -rw-------. 1 boinc boinc    992790 Nov 18 13:19 agis_schedconf.cvmfs.json
[2025-11-18 13:25:36] -rw-------. 1 boinc boinc   1525063 Nov 18 13:19 agis_ddmendpoints.agis.ALL.json
[2025-11-18 13:25:36] drwx------. 5 boinc boinc      4096 Nov 18 13:19 pilot3
[2025-11-18 13:25:36] -rw-r--r--. 1 boinc boinc       524 Nov 18 13:21 boinc_task_state.xml
[2025-11-18 13:25:36] -rw-------. 1 boinc boinc       994 Nov 18 13:22 memory_monitor_summary.json
[2025-11-18 13:25:36] -rw-------. 1 boinc boinc     49222 Nov 18 13:22 log.47493068._001860.job.log.tgz.1
[2025-11-18 13:25:36] -rw-------. 1 boinc boinc        95 Nov 18 13:24 pilot_heartbeat.json
[2025-11-18 13:25:36] -rw-------. 1 boinc boinc     10333 Nov 18 13:24 heartbeat.json
[2025-11-18 13:25:36] -rw-------. 1 boinc boinc      4823 Nov 18 13:25 pilotlog.txt
[2025-11-18 13:25:36] -rw-------. 1 boinc boinc    107114 Nov 18 13:25 log.47493068._001860.job.log.1
[2025-11-18 13:25:36] -rw-r--r--. 1 boinc boinc      8192 Nov 18 13:25 boinc_mmap_file
[2025-11-18 13:25:36] -rw-r--r--. 1 boinc boinc        23 Nov 18 13:25 wrapper_checkpoint.txt
[2025-11-18 13:25:36] -rw-------. 1 boinc boinc       186 Nov 18 13:25 output.list
[2025-11-18 13:25:36] -rw-r--r--. 1 boinc boinc       620 Nov 18 13:25 runtime_log
[2025-11-18 13:25:36] -rw-------. 1 boinc boinc    174080 Nov 18 13:25 result.tar.gz
[2025-11-18 13:25:36] -rw-------. 1 boinc boinc       647 Nov 18 13:25 WcyMDmYtcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmqKFKDmT8VFDo.diag
[2025-11-18 13:25:36] -rw-r--r--. 1 boinc boinc      8526 Nov 18 13:25 runtime_log.err
[2025-11-18 13:25:36] -rw-r--r--. 1 boinc boinc     22511 Nov 18 13:25 stderr.txt
[2025-11-18 13:25:36] No HITS result produced
[2025-11-18 13:25:36]  *** Contents of shared directory: ***
[2025-11-18 13:25:36] total 401584
[2025-11-18 13:25:36] -rw-r--r--. 2 boinc boinc 410435181 Nov 18 13:19 ATLAS.root_0
[2025-11-18 13:25:36] -rw-r--r--. 2 boinc boinc     15120 Nov 18 13:19 start_atlas.sh
[2025-11-18 13:25:36] -rw-r--r--. 2 boinc boinc    590104 Nov 18 13:19 input.tar.gz
[2025-11-18 13:25:36] -rw-------. 1 boinc boinc    174080 Nov 18 13:25 result.tar.gz
13:25:38 (4133483): run_atlas exited; CPU time 52.102668
13:25:38 (4133483): called boinc_finish(0)

</stderr_txt>
]]>

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