Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:43:32 (4131780): wrapper (7.7.26015): starting
13:43:32 (4131780): wrapper: running run_atlas (--nthreads 12)
[2025-11-18 13:43:32] Arguments: --nthreads 12
[2025-11-18 13:43:32] Threads: 12
[2025-11-18 13:43:32] Checking for CVMFS
[2025-11-18 13:43:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-18 13:43:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-18 13:43:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-18 13:43:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-18 13:43:34] 2.11.5.0 4091557 17134 168036 153014 1 271 24696313 45568001 15046 130560 0 144835287 99.750 100999313 22335 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-18 13:43:34] CVMFS is ok
[2025-11-18 13:43:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-18 13:43:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-18 13:43:34] Further information can be found at the LHC@home message board.
[2025-11-18 13:43:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-18 13:43:34] Checking for apptainer binary...
[2025-11-18 13:43:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-18 13:43:34] Running /usr/bin/apptainer --version
[2025-11-18 13:43:34] apptainer version 1.4.1-1.el9
[2025-11-18 13:43:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-18 13:43:36] wns0073.triumf.lcg
[2025-11-18 13:43:36] apptainer works
[2025-11-18 13:43:36] Set ATHENA_PROC_NUMBER=12
[2025-11-18 13:43:36] Set ATHENA_CORE_NUMBER=12
[2025-11-18 13:43:36] Starting ATLAS job with PandaID=6891601608
[2025-11-18 13:43:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-18 13:53:34]  *** The last 200 lines of the pilot log: ***
[2025-11-18 13:53:34] 2025-11-18 21:52:33,634 | INFO     | could have reported an average CPU frequency of 1477 MHz (4 samples)
[2025-11-18 13:53:34] 2025-11-18 21:52:33,634 | INFO     | ..............................
[2025-11-18 13:53:34] 2025-11-18 21:52:33,634 | INFO     | . Timing measurements:
[2025-11-18 13:53:34] 2025-11-18 21:52:33,635 | INFO     | . get job = 0 s
[2025-11-18 13:53:34] 2025-11-18 21:52:33,635 | INFO     | . initial setup = 5 s
[2025-11-18 13:53:34] 2025-11-18 21:52:33,635 | INFO     | . payload setup = 31 s
[2025-11-18 13:53:34] 2025-11-18 21:52:33,635 | INFO     | . stage-in = 1 s
[2025-11-18 13:53:34] 2025-11-18 21:52:33,635 | INFO     | . payload execution = 226 s
[2025-11-18 13:53:34] 2025-11-18 21:52:33,635 | INFO     | . stage-out = 1 s
[2025-11-18 13:53:34] 2025-11-18 21:52:33,635 | INFO     | . log creation = 0 s
[2025-11-18 13:53:34] 2025-11-18 21:52:33,635 | INFO     | ..............................
[2025-11-18 13:53:34] 2025-11-18 21:52:33,636 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 13:53:34] 2025-11-18 21:52:33,636 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891601608/pilotlog.txt
[2025-11-18 13:53:34] 2025-11-18 21:52:33,673 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-18 13:53:34] - Log from pilotlog.txt -
[2025-11-18 13:53:34] 2025-11-18 21:52:33,611 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891601608/memory_monitor_summary.json (trf name=prmon)
[2025-11-18 13:53:34] 2025-11-18 21:52:33,612 | INFO     | extracted standard info from prmon json
[2025-11-18 13:53:34] 2025-11-18 21:52:33,612 | INFO     | extracted standard memory fields from prmon json
[2025-11-18 13:53:34] 2025-11-18 21:52:33,613 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-18 13:53:34] 2025-11-18 21:52:33,613 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-18 13:53:34] 2025-11-18 21:52:33,613 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-18 13:53:34] 2025-11-18 21:52:33,614 | WARNING  | wrong length of table data, x=[1763502408.0, 1763502469.0, 1763502530.0, 1763502591.0], y=[12181.0, 524953.0, 350265.0, 758946.0] (must be same and length>=4)
[2025-11-18 13:53:34] 2025-11-18 21:52:33,634 | INFO     | could have reported an average CPU frequency of 1477 MHz (4 samples)
[2025-11-18 13:53:34] 2025-11-18 21:52:33,634 | INFO     | ..............................
[2025-11-18 13:53:34] 2025-11-18 21:52:33,634 | INFO     | . Timing measurements:
[2025-11-18 13:53:34] 2025-11-18 21:52:33,635 | INFO     | . get job = 0 s
[2025-11-18 13:53:34] 2025-11-18 21:52:33,635 | INFO     | . initial setup = 5 s
[2025-11-18 13:53:34] 2025-11-18 21:52:33,635 | INFO     | . payload setup = 31 s
[2025-11-18 13:53:34] 2025-11-18 21:52:33,635 | INFO     | . stage-in = 1 s
[2025-11-18 13:53:34] 2025-11-18 21:52:33,635 | INFO     | . payload execution = 226 s
[2025-11-18 13:53:34] 2025-11-18 21:52:33,635 | INFO     | . stage-out = 1 s
[2025-11-18 13:53:34] 2025-11-18 21:52:33,635 | INFO     | . log creation = 0 s
[2025-11-18 13:53:34] 2025-11-18 21:52:33,635 | INFO     | ..............................
[2025-11-18 13:53:34] 2025-11-18 21:52:33,636 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 13:53:34] 2025-11-18 21:52:33,636 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891601608/pilotlog.txt
[2025-11-18 13:53:34] 2025-11-18 21:52:33,674 | WARNING  | 
[2025-11-18 13:53:34] [begin log extracts]
[2025-11-18 13:53:34] - Log from pilotlog.txt -
[2025-11-18 13:53:34] 2025-11-18 21:52:33,611 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891601608/memory_monitor_summary.json (trf name=prmon)
[2025-11-18 13:53:34] 2025-11-18 21:52:33,612 | INFO     | extracted standard info from prmon json
[2025-11-18 13:53:34] 2025-11-18 21:52:33,612 | INFO     | extracted standard memory fields from prmon json
[2025-11-18 13:53:34] 2025-11-18 21:52:33,613 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-18 13:53:34] 2025-11-18 21:52:33,613 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-18 13:53:34] 2025-11-18 21:52:33,613 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-18 13:53:34] 2025-11-18 21:52:33,614 | WARNING  | wrong length of table data, x=[1763502408.0, 1763502469.0, 1763502530.0, 1763502591.0], y=[12181.0, 524953.0, 350265.0, 758946.0] (must be same and length>=4)
[2025-11-18 13:53:34] 2025-11-18 21:52:33,634 | INFO     | could have reported an average CPU frequency of 1477 MHz (4 samples)
[2025-11-18 13:53:34] 2025-11-18 21:52:33,634 | INFO     | ..............................
[2025-11-18 13:53:34] 2025-11-18 21:52:33,634 | INFO     | . Timing measurements:
[2025-11-18 13:53:34] 2025-11-18 21:52:33,635 | INFO     | . get job = 0 s
[2025-11-18 13:53:34] 2025-11-18 21:52:33,635 | INFO     | . initial setup = 5 s
[2025-11-18 13:53:34] 2025-11-18 21:52:33,635 | INFO     | . payload setup = 31 s
[2025-11-18 13:53:34] 2025-11-18 21:52:33,635 | INFO     | . stage-in = 1 s
[2025-11-18 13:53:34] 2025-11-18 21:52:33,635 | INFO     | . payload execution = 226 s
[2025-11-18 13:53:34] 2025-11-18 21:52:33,635 | INFO     | . stage-out = 1 s
[2025-11-18 13:53:34] 2025-11-18 21:52:33,635 | INFO     | . log creation = 0 s
[2025-11-18 13:53:34] 2025-11-18 21:52:33,635 | INFO     | ..............................
[2025-11-18 13:53:34] 2025-11-18 21:52:33,636 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 13:53:34] 2025-11-18 21:52:33,636 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891601608/pilotlog.txt
[2025-11-18 13:53:34] [end log extracts]
[2025-11-18 13:53:34] 2025-11-18 21:52:33,674 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-18 13:53:34] 2025-11-18 21:52:33,675 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-18 13:53:34] 2025-11-18 21:52:34,271 | INFO     | 
[2025-11-18 13:53:34] 2025-11-18 21:52:34,271 | INFO     | job summary report
[2025-11-18 13:53:34] 2025-11-18 21:52:34,271 | INFO     | --------------------------------------------------
[2025-11-18 13:53:34] 2025-11-18 21:52:34,271 | INFO     | PanDA job id: 6891601608
[2025-11-18 13:53:34] 2025-11-18 21:52:34,272 | INFO     | task id: 47493068
[2025-11-18 13:53:34] 2025-11-18 21:52:34,272 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-18 13:49:58,700 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-18 13:53:34] 2025-11-18 21:52:34,272 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-18 13:53:34] 2025-11-18 21:52:34,272 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-18 13:53:34] 2025-11-18 21:52:34,272 | INFO     | pilot state: failed 
[2025-11-18 13:53:34] 2025-11-18 21:52:34,272 | INFO     | transexitcode: 65
[2025-11-18 13:53:34] 2025-11-18 21:52:34,272 | INFO     | exeerrorcode: 65
[2025-11-18 13:53:34] 2025-11-18 21:52:34,272 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-18 13:53:34] 2025-11-18 21:52:34,272 | INFO     | exitcode: 65
[2025-11-18 13:53:34] 2025-11-18 21:52:34,272 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-18 13:53:34] 2025-11-18 21:52:34,273 | INFO     | cpuconsumptiontime: 86 s
[2025-11-18 13:53:34] 2025-11-18 21:52:34,273 | INFO     | nevents: 0
[2025-11-18 13:53:34] 2025-11-18 21:52:34,273 | INFO     | neventsw: 0
[2025-11-18 13:53:34] 2025-11-18 21:52:34,273 | INFO     | pid: 4142380
[2025-11-18 13:53:34] 2025-11-18 21:52:34,273 | INFO     | pgrp: 4142380
[2025-11-18 13:53:34] 2025-11-18 21:52:34,273 | INFO     | corecount: 12
[2025-11-18 13:53:34] 2025-11-18 21:52:34,273 | INFO     | event service: False
[2025-11-18 13:53:34] 2025-11-18 21:52:34,273 | INFO     | sizes: {0: 2296970, 2: 2297111, 3: 2297253, 14: 2297253, 25: 2297281, 36: 2297571, 37: 2297727, 49: 2297755, 262: 2323225, 264: 2327515, 266: 2327571, 409: 2328045
[2025-11-18 13:53:34] 2025-11-18 21:52:34,273 | INFO     | --------------------------------------------------
[2025-11-18 13:53:34] 2025-11-18 21:52:34,273 | INFO     | 
[2025-11-18 13:53:34] 2025-11-18 21:52:34,274 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-18 13:53:34] 2025-11-18 21:52:34,335 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-18 13:53:34] 2025-11-18 21:52:34,336 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-18 13:53:34] 2025-11-18 21:52:34,336 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-18 13:53:34] 2025-11-18 21:52:34,336 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-18 13:53:34] 2025-11-18 21:52:34,336 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-18 13:53:34] 2025-11-18 21:52:34,336 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-18 13:53:34] 2025-11-18 21:52:34,337 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-18 13:53:34] 2025-11-18 21:52:34,337 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-18 13:53:34] 2025-11-18 21:52:34,337 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-18 13:53:34] 2025-11-18 21:52:34,337 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-18 13:53:34] 2025-11-18 21:52:34,337 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-18 13:53:34] 2025-11-18 21:52:34,337 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-18 13:53:34] 2025-11-18 21:52:34,337 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-18 13:53:34] 2025-11-18 21:52:34,337 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-18 13:53:34] 2025-11-18 21:52:34,337 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-18 13:53:34] 2025-11-18 21:52:34,338 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-18 13:53:34] 2025-11-18 21:52:34,338 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-18 13:53:34] 2025-11-18 21:52:34,338 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-18 13:53:34] 2025-11-18 21:52:34,338 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-18 13:53:34] 2025-11-18 21:52:34,338 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-18 13:53:34] 2025-11-18 21:52:34,338 | INFO     | job 6891601608 has completed (purged errors)
[2025-11-18 13:53:34] 2025-11-18 21:52:34,338 | INFO     | overall cleanup function is called
[2025-11-18 13:53:34] 2025-11-18 21:52:35,349 | INFO     | --- collectZombieJob: --- 10, [4142380]
[2025-11-18 13:53:34] 2025-11-18 21:52:35,349 | INFO     | zombie collector waiting for pid 4142380
[2025-11-18 13:53:34] 2025-11-18 21:52:35,349 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-18 13:53:34] 2025-11-18 21:52:35,349 | INFO     | collected zombie processes
[2025-11-18 13:53:34] 2025-11-18 21:52:35,349 | INFO     | will attempt to kill all subprocesses of pid=4142380
[2025-11-18 13:53:34] 2025-11-18 21:52:35,512 | INFO     | process IDs to be killed: [4142380] (in reverse order)
[2025-11-18 13:53:34] 2025-11-18 21:52:35,576 | WARNING  | found no corresponding commands to process id(s)
[2025-11-18 13:53:34] 2025-11-18 21:52:35,577 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-18 13:53:34] 2025-11-18 21:52:35,584 | INFO     | did not find any defunct processes belonging to 4142380
[2025-11-18 13:53:34] 2025-11-18 21:52:35,591 | INFO     | did not find any defunct processes belonging to 4142380
[2025-11-18 13:53:34] 2025-11-18 21:52:35,592 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-18 13:53:34] 2025-11-18 21:52:35,592 | INFO     | ready for new job
[2025-11-18 13:53:34] 2025-11-18 21:52:35,592 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-18 13:53:34] 2025-11-18 21:52:35,594 | INFO     | ***************************************
[2025-11-18 13:53:34] 2025-11-18 21:52:35,594 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-18 13:53:34] 2025-11-18 21:52:35,594 | INFO     | ***************************************
[2025-11-18 13:53:34] 2025-11-18 21:52:35,594 | INFO     | 
[2025-11-18 13:53:34] 2025-11-18 21:52:35,596 | INFO     | architecture information:
[2025-11-18 13:53:34] 2025-11-18 21:52:35,596 | INFO     | executing command: cat /etc/os-release
[2025-11-18 13:53:34] 2025-11-18 21:52:35,612 | INFO     | cat /etc/os-release:
[2025-11-18 13:53:34] NAME="CentOS Linux"
[2025-11-18 13:53:34] VERSION="7 (Core)"
[2025-11-18 13:53:34] ID="centos"
[2025-11-18 13:53:34] ID_LIKE="rhel fedora"
[2025-11-18 13:53:34] VERSION_ID="7"
[2025-11-18 13:53:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-18 13:53:34] ANSI_COLOR="0;31"
[2025-11-18 13:53:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-18 13:53:34] HOME_URL="https://www.centos.org/"
[2025-11-18 13:53:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-18 13:53:34] 
[2025-11-18 13:53:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-18 13:53:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-18 13:53:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-18 13:53:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-18 13:53:34] 
[2025-11-18 13:53:34] 2025-11-18 21:52:35,613 | INFO     | ***************************************
[2025-11-18 13:53:34] 2025-11-18 21:52:36,118 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-18 13:53:34] 2025-11-18 21:52:36,188 | INFO     | sufficient remaining disk space (1237131984896 B)
[2025-11-18 13:53:34] 2025-11-18 21:52:36,193 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-18 13:53:34] 2025-11-18 21:52:36,194 | INFO     | current server update state: UPDATING_FINAL
[2025-11-18 13:53:34] 2025-11-18 21:52:36,194 | INFO     | update_server=False
[2025-11-18 13:53:34] 2025-11-18 21:52:36,194 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-18 13:53:34] 2025-11-18 21:52:36,197 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-18 13:53:34] 2025-11-18 21:52:36,197 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-18 13:53:34] 2025-11-18 21:52:36,198 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-18 13:53:34] 2025-11-18 21:52:36,198 | INFO     | will abort loop
[2025-11-18 13:53:34] 2025-11-18 21:52:36,505 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-18 13:53:34] 2025-11-18 21:52:36,647 | INFO     | all job control threads have been joined
[2025-11-18 13:53:34] 2025-11-18 21:52:37,200 | INFO     | [job] retrieve thread has finished
[2025-11-18 13:53:34] 2025-11-18 21:52:37,201 | INFO     | all data control threads have been joined
[2025-11-18 13:53:34] 2025-11-18 21:52:37,205 | INFO     | [job] job monitor thread has finished
[2025-11-18 13:53:34] 2025-11-18 21:52:37,305 | INFO     | [payload] failed_post thread has finished
[2025-11-18 13:53:34] 2025-11-18 21:52:37,330 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-18 13:53:34] 2025-11-18 21:52:37,363 | INFO     | [job] validate thread has finished
[2025-11-18 13:53:34] 2025-11-18 21:52:37,388 | INFO     | [payload] validate_pre thread has finished
[2025-11-18 13:53:34] 2025-11-18 21:52:37,653 | INFO     | [job] control thread has finished
[2025-11-18 13:53:34] 2025-11-18 21:52:37,675 | INFO     | all payload control threads have been joined
[2025-11-18 13:53:34] 2025-11-18 21:52:37,700 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-18 13:53:34] 2025-11-18 21:52:37,926 | INFO     | [data] copytool_in thread has finished
[2025-11-18 13:53:34] 2025-11-18 21:52:38,091 | INFO     | [job] create_data_payload thread has finished
[2025-11-18 13:53:34] 2025-11-18 21:52:38,207 | INFO     | [data] control thread has finished
[2025-11-18 13:53:34] 2025-11-18 21:52:38,395 | INFO     | [payload] execute_payloads thread has finished
[2025-11-18 13:53:34] 2025-11-18 21:52:38,681 | INFO     | [payload] control thread has finished
[2025-11-18 13:53:34] 2025-11-18 21:52:38,705 | INFO     | [payload] validate_post thread has finished
[2025-11-18 13:53:34] 2025-11-18 21:52:38,803 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-18 13:53:34] 2025-11-18 21:52:39,337 | INFO     | [data] copytool_out thread has finished
[2025-11-18 13:53:34] 2025-11-18 21:52:39,809 | INFO     | [job] queue monitor thread has finished
[2025-11-18 13:53:34] 2025-11-18 21:52:40,528 | INFO     | [data] queue_monitor thread has finished
[2025-11-18 13:53:34] 2025-11-18 21:53:06,766 | INFO     | PID=4135537 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-18 13:53:34] 2025-11-18 21:53:06,766 | INFO     | .. there are 20 such processes running
[2025-11-18 13:53:34] 2025-11-18 21:53:06,766 | INFO     | found 0 job(s) in 20 queues
[2025-11-18 13:53:34] 2025-11-18 21:53:06,766 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-18 13:53:34] 2025-11-18 21:53:06,766 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-18 13:53:34] 2025-11-18 21:53:28,805 | INFO     | [monitor] cgroup control has ended
[2025-11-18 13:53:34] 2025-11-18 21:53:28,886 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140119930087232)>', '<ExcThread(monitor, started 140118912382720)>']
[2025-11-18 13:53:34] 2025-11-18 21:53:28,904 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-18 13:53:34] 2025-11-18 21:53:28,905 | INFO     | [monitor] control thread has ended
[2025-11-18 13:53:34] 2025-11-18 21:53:33,919 | INFO     | all workflow threads have been joined
[2025-11-18 13:53:34] 2025-11-18 21:53:33,919 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-18 13:53:34] 2025-11-18 21:53:33,924 | INFO     | traces error code: 0
[2025-11-18 13:53:34] 2025-11-18 21:53:33,924 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-18 13:53:34] 2025-11-18 21:53:34,540 [wrapper] ==== pilot stdout END ====
[2025-11-18 13:53:34] 2025-11-18 21:53:34,550 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-18 13:53:34] 2025-11-18 21:53:34,557 [wrapper] pilotpid: 4135537
[2025-11-18 13:53:34] 2025-11-18 21:53:34,567 [wrapper] Pilot exit status: 0
[2025-11-18 13:53:34] 2025-11-18 21:53:34,614 [wrapper] pandaids: 6891601608
[2025-11-18 13:53:34] 2025-11-18 21:53:34,655 [wrapper] cleanup supervisor_pilot 4135543 4135538
[2025-11-18 13:53:34] 2025-11-18 21:53:34,659 [wrapper] Test setup, not cleaning
[2025-11-18 13:53:34] 2025-11-18 21:53:34,661 [wrapper] apfmon messages muted
[2025-11-18 13:53:34] 2025-11-18 21:53:34,663 [wrapper] ==== wrapper stdout END ====
[2025-11-18 13:53:34] 2025-11-18 21:53:34,665 [wrapper] ==== wrapper stderr END ====
[2025-11-18 13:53:34]  *** Error codes and diagnostics ***
[2025-11-18 13:53:34]     "exeErrorCode": 65,
[2025-11-18 13:53:34]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-18 13:53:34]     "pilotErrorCode": 1305,
[2025-11-18 13:53:34]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-18 13:53:34]  *** Listing of results directory ***
[2025-11-18 13:53:34] total 404496
[2025-11-18 13:53:34] -rw-r--r--. 1 boinc boinc    576529 Nov 18 10:50 pilot3.tar.gz
[2025-11-18 13:53:34] -rw-r--r--. 1 boinc boinc      5112 Nov 18 11:15 queuedata.json
[2025-11-18 13:53:34] -rwx------. 1 boinc boinc     36292 Nov 18 11:16 runpilot2-wrapper.sh
[2025-11-18 13:53:34] -rw-r--r--. 1 boinc boinc       100 Nov 18 13:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-18 13:53:34] -rwxr-xr-x. 1 boinc boinc      7986 Nov 18 13:43 run_atlas
[2025-11-18 13:53:34] -rw-r--r--. 1 boinc boinc       105 Nov 18 13:43 job.xml
[2025-11-18 13:53:34] -rw-r--r--. 1 boinc boinc      6594 Nov 18 13:43 init_data.xml
[2025-11-18 13:53:34] -rw-r--r--. 2 boinc boinc 409932104 Nov 18 13:43 EVNT.47493065._000837.pool.root.1
[2025-11-18 13:53:34] -rw-r--r--. 2 boinc boinc     15120 Nov 18 13:43 start_atlas.sh
[2025-11-18 13:53:34] drwxrwx--x. 2 boinc boinc      4096 Nov 18 13:43 shared
[2025-11-18 13:53:34] -rw-r--r--. 2 boinc boinc    590096 Nov 18 13:43 input.tar.gz
[2025-11-18 13:53:34] -rw-r--r--. 1 boinc boinc         0 Nov 18 13:43 boinc_lockfile
[2025-11-18 13:53:34] -rw-r--r--. 1 boinc boinc      2773 Nov 18 13:43 pandaJob.out
[2025-11-18 13:53:34] -rw-------. 1 boinc boinc    992790 Nov 18 13:44 agis_schedconf.cvmfs.json
[2025-11-18 13:53:34] -rw-------. 1 boinc boinc   1525063 Nov 18 13:44 agis_ddmendpoints.agis.ALL.json
[2025-11-18 13:53:34] drwx------. 5 boinc boinc      4096 Nov 18 13:44 pilot3
[2025-11-18 13:53:34] -rw-r--r--. 1 boinc boinc       525 Nov 18 13:49 boinc_task_state.xml
[2025-11-18 13:53:34] -rw-------. 1 boinc boinc      1003 Nov 18 13:50 memory_monitor_summary.json
[2025-11-18 13:53:34] -rw-------. 1 boinc boinc     51534 Nov 18 13:50 log.47493068._007012.job.log.tgz.1
[2025-11-18 13:53:34] -rw-------. 1 boinc boinc        95 Nov 18 13:52 pilot_heartbeat.json
[2025-11-18 13:53:34] -rw-------. 1 boinc boinc     10340 Nov 18 13:52 heartbeat.json
[2025-11-18 13:53:34] -rw-r--r--. 1 boinc boinc      8192 Nov 18 13:53 boinc_mmap_file
[2025-11-18 13:53:34] -rw-r--r--. 1 boinc boinc        23 Nov 18 13:53 wrapper_checkpoint.txt
[2025-11-18 13:53:34] -rw-------. 1 boinc boinc      5009 Nov 18 13:53 pilotlog.txt
[2025-11-18 13:53:34] -rw-------. 1 boinc boinc    122506 Nov 18 13:53 log.47493068._007012.job.log.1
[2025-11-18 13:53:34] -rw-------. 1 boinc boinc       186 Nov 18 13:53 output.list
[2025-11-18 13:53:34] -rw-r--r--. 1 boinc boinc       620 Nov 18 13:53 runtime_log
[2025-11-18 13:53:34] -rw-------. 1 boinc boinc    194560 Nov 18 13:53 result.tar.gz
[2025-11-18 13:53:34] -rw-r--r--. 1 boinc boinc      8528 Nov 18 13:53 runtime_log.err
[2025-11-18 13:53:34] -rw-------. 1 boinc boinc       645 Nov 18 13:53 L5GLDmtMgf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmNmFKDmaX63Nm.diag
[2025-11-18 13:53:34] -rw-r--r--. 1 boinc boinc     22596 Nov 18 13:53 stderr.txt
[2025-11-18 13:53:34] No HITS result produced
[2025-11-18 13:53:34]  *** Contents of shared directory: ***
[2025-11-18 13:53:34] total 401120
[2025-11-18 13:53:34] -rw-r--r--. 2 boinc boinc 409932104 Nov 18 13:43 ATLAS.root_0
[2025-11-18 13:53:34] -rw-r--r--. 2 boinc boinc     15120 Nov 18 13:43 start_atlas.sh
[2025-11-18 13:53:34] -rw-r--r--. 2 boinc boinc    590096 Nov 18 13:43 input.tar.gz
[2025-11-18 13:53:34] -rw-------. 1 boinc boinc    194560 Nov 18 13:53 result.tar.gz
13:53:35 (4131780): run_atlas exited; CPU time 91.472464
13:53:35 (4131780): called boinc_finish(0)

</stderr_txt>
]]>

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