Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:07:55 (3536325): wrapper (7.7.26015): starting
13:07:55 (3536325): wrapper: running run_atlas (--nthreads 12)
[2025-11-18 13:07:55] Arguments: --nthreads 12
[2025-11-18 13:07:55] Threads: 12
[2025-11-18 13:07:55] Checking for CVMFS
[2025-11-18 13:07:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-18 13:07:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-18 13:07:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-18 13:07:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-18 13:07:55] 2.11.5.0 3591329 17333 353180 153013 0 559 39078469 45568001 14915 130560 0 151287195 99.767 110751945 27462 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-18 13:07:55] CVMFS is ok
[2025-11-18 13:07:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-18 13:07:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-18 13:07:55] Further information can be found at the LHC@home message board.
[2025-11-18 13:07:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-18 13:07:55] Checking for apptainer binary...
[2025-11-18 13:07:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-18 13:07:55] Running /usr/bin/apptainer --version
[2025-11-18 13:07:55] apptainer version 1.4.1-1.el9
[2025-11-18 13:07:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-18 13:07:56] wns0096.triumf.lcg
[2025-11-18 13:07:56] apptainer works
[2025-11-18 13:07:56] Set ATHENA_PROC_NUMBER=12
[2025-11-18 13:07:56] Set ATHENA_CORE_NUMBER=12
[2025-11-18 13:07:56] Starting ATLAS job with PandaID=6891601588
[2025-11-18 13:07:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-18 13:14:43]  *** The last 200 lines of the pilot log: ***
[2025-11-18 13:14:43] 2025-11-18 21:14:09,200 | WARNING  | wrong length of table data, x=[1763500155.0, 1763500216.0, 1763500277.0], y=[968.0, 763783.0, 489152.0] (must be same and length>=4)
[2025-11-18 13:14:43] 2025-11-18 21:14:09,200 | INFO     | could have reported an average CPU frequency of 2642 MHz (4 samples)
[2025-11-18 13:14:43] 2025-11-18 21:14:09,200 | INFO     | ..............................
[2025-11-18 13:14:43] 2025-11-18 21:14:09,200 | INFO     | . Timing measurements:
[2025-11-18 13:14:43] 2025-11-18 21:14:09,200 | INFO     | . get job = 0 s
[2025-11-18 13:14:43] 2025-11-18 21:14:09,201 | INFO     | . initial setup = 3 s
[2025-11-18 13:14:43] 2025-11-18 21:14:09,201 | INFO     | . payload setup = 7 s
[2025-11-18 13:14:43] 2025-11-18 21:14:09,201 | INFO     | . stage-in = 0 s
[2025-11-18 13:14:43] 2025-11-18 21:14:09,201 | INFO     | . payload execution = 169 s
[2025-11-18 13:14:43] 2025-11-18 21:14:09,201 | INFO     | . stage-out = 0 s
[2025-11-18 13:14:43] 2025-11-18 21:14:09,201 | INFO     | . log creation = 0 s
[2025-11-18 13:14:43] 2025-11-18 21:14:09,201 | INFO     | ..............................
[2025-11-18 13:14:43] 2025-11-18 21:14:09,201 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 13:14:43] 2025-11-18 21:14:09,201 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891601588/pilotlog.txt
[2025-11-18 13:14:43] 2025-11-18 21:14:09,214 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-18 13:14:43] - Log from pilotlog.txt -
[2025-11-18 13:14:43] 2025-11-18 21:14:09,197 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891601588/memory_monitor_summary.json (trf name=prmon)
[2025-11-18 13:14:43] 2025-11-18 21:14:09,198 | INFO     | extracted standard info from prmon json
[2025-11-18 13:14:43] 2025-11-18 21:14:09,198 | INFO     | extracted standard memory fields from prmon json
[2025-11-18 13:14:43] 2025-11-18 21:14:09,198 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-18 13:14:43] 2025-11-18 21:14:09,199 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-18 13:14:43] 2025-11-18 21:14:09,199 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-18 13:14:43] 2025-11-18 21:14:09,200 | WARNING  | wrong length of table data, x=[1763500155.0, 1763500216.0, 1763500277.0], y=[968.0, 763783.0, 489152.0] (must be same and length>=4)
[2025-11-18 13:14:43] 2025-11-18 21:14:09,200 | INFO     | could have reported an average CPU frequency of 2642 MHz (4 samples)
[2025-11-18 13:14:43] 2025-11-18 21:14:09,200 | INFO     | ..............................
[2025-11-18 13:14:43] 2025-11-18 21:14:09,200 | INFO     | . Timing measurements:
[2025-11-18 13:14:43] 2025-11-18 21:14:09,200 | INFO     | . get job = 0 s
[2025-11-18 13:14:43] 2025-11-18 21:14:09,201 | INFO     | . initial setup = 3 s
[2025-11-18 13:14:43] 2025-11-18 21:14:09,201 | INFO     | . payload setup = 7 s
[2025-11-18 13:14:43] 2025-11-18 21:14:09,201 | INFO     | . stage-in = 0 s
[2025-11-18 13:14:43] 2025-11-18 21:14:09,201 | INFO     | . payload execution = 169 s
[2025-11-18 13:14:43] 2025-11-18 21:14:09,201 | INFO     | . stage-out = 0 s
[2025-11-18 13:14:43] 2025-11-18 21:14:09,201 | INFO     | . log creation = 0 s
[2025-11-18 13:14:43] 2025-11-18 21:14:09,201 | INFO     | ..............................
[2025-11-18 13:14:43] 2025-11-18 21:14:09,201 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 13:14:43] 2025-11-18 21:14:09,201 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891601588/pilotlog.txt
[2025-11-18 13:14:43] 2025-11-18 21:14:09,214 | WARNING  | 
[2025-11-18 13:14:43] [begin log extracts]
[2025-11-18 13:14:43] - Log from pilotlog.txt -
[2025-11-18 13:14:43] 2025-11-18 21:14:09,197 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891601588/memory_monitor_summary.json (trf name=prmon)
[2025-11-18 13:14:43] 2025-11-18 21:14:09,198 | INFO     | extracted standard info from prmon json
[2025-11-18 13:14:43] 2025-11-18 21:14:09,198 | INFO     | extracted standard memory fields from prmon json
[2025-11-18 13:14:43] 2025-11-18 21:14:09,198 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-18 13:14:43] 2025-11-18 21:14:09,199 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-18 13:14:43] 2025-11-18 21:14:09,199 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-18 13:14:43] 2025-11-18 21:14:09,200 | WARNING  | wrong length of table data, x=[1763500155.0, 1763500216.0, 1763500277.0], y=[968.0, 763783.0, 489152.0] (must be same and length>=4)
[2025-11-18 13:14:43] 2025-11-18 21:14:09,200 | INFO     | could have reported an average CPU frequency of 2642 MHz (4 samples)
[2025-11-18 13:14:43] 2025-11-18 21:14:09,200 | INFO     | ..............................
[2025-11-18 13:14:43] 2025-11-18 21:14:09,200 | INFO     | . Timing measurements:
[2025-11-18 13:14:43] 2025-11-18 21:14:09,200 | INFO     | . get job = 0 s
[2025-11-18 13:14:43] 2025-11-18 21:14:09,201 | INFO     | . initial setup = 3 s
[2025-11-18 13:14:43] 2025-11-18 21:14:09,201 | INFO     | . payload setup = 7 s
[2025-11-18 13:14:43] 2025-11-18 21:14:09,201 | INFO     | . stage-in = 0 s
[2025-11-18 13:14:43] 2025-11-18 21:14:09,201 | INFO     | . payload execution = 169 s
[2025-11-18 13:14:43] 2025-11-18 21:14:09,201 | INFO     | . stage-out = 0 s
[2025-11-18 13:14:43] 2025-11-18 21:14:09,201 | INFO     | . log creation = 0 s
[2025-11-18 13:14:43] 2025-11-18 21:14:09,201 | INFO     | ..............................
[2025-11-18 13:14:43] 2025-11-18 21:14:09,201 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 13:14:43] 2025-11-18 21:14:09,201 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891601588/pilotlog.txt
[2025-11-18 13:14:43] [end log extracts]
[2025-11-18 13:14:43] 2025-11-18 21:14:09,214 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-18 13:14:43] 2025-11-18 21:14:09,215 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-18 13:14:43] 2025-11-18 21:14:09,763 | INFO     | 
[2025-11-18 13:14:43] 2025-11-18 21:14:09,763 | INFO     | job summary report
[2025-11-18 13:14:43] 2025-11-18 21:14:09,763 | INFO     | --------------------------------------------------
[2025-11-18 13:14:43] 2025-11-18 21:14:09,763 | INFO     | PanDA job id: 6891601588
[2025-11-18 13:14:43] 2025-11-18 21:14:09,763 | INFO     | task id: 47493068
[2025-11-18 13:14:43] 2025-11-18 21:14:09,763 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-18 13:11:50,235 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-18 13:14:43] 2025-11-18 21:14:09,763 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-18 13:14:43] 2025-11-18 21:14:09,763 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-18 13:14:43] 2025-11-18 21:14:09,763 | INFO     | pilot state: failed 
[2025-11-18 13:14:43] 2025-11-18 21:14:09,763 | INFO     | transexitcode: 65
[2025-11-18 13:14:43] 2025-11-18 21:14:09,763 | INFO     | exeerrorcode: 65
[2025-11-18 13:14:43] 2025-11-18 21:14:09,763 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-18 13:14:43] 2025-11-18 21:14:09,763 | INFO     | exitcode: 65
[2025-11-18 13:14:43] 2025-11-18 21:14:09,763 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-18 13:14:43] 2025-11-18 21:14:09,763 | INFO     | cpuconsumptiontime: 44 s
[2025-11-18 13:14:43] 2025-11-18 21:14:09,764 | INFO     | nevents: 0
[2025-11-18 13:14:43] 2025-11-18 21:14:09,764 | INFO     | neventsw: 0
[2025-11-18 13:14:43] 2025-11-18 21:14:09,764 | INFO     | pid: 3546589
[2025-11-18 13:14:43] 2025-11-18 21:14:09,764 | INFO     | pgrp: 3546589
[2025-11-18 13:14:43] 2025-11-18 21:14:09,764 | INFO     | corecount: 12
[2025-11-18 13:14:43] 2025-11-18 21:14:09,764 | INFO     | event service: False
[2025-11-18 13:14:43] 2025-11-18 21:14:09,764 | INFO     | sizes: {0: 2296975, 1: 2297174, 12: 2297174, 23: 2297464, 33: 2297492, 179: 2322930, 180: 2323034, 181: 2327352, 184: 2327380, 308: 2327546}
[2025-11-18 13:14:43] 2025-11-18 21:14:09,764 | INFO     | --------------------------------------------------
[2025-11-18 13:14:43] 2025-11-18 21:14:09,764 | INFO     | 
[2025-11-18 13:14:43] 2025-11-18 21:14:09,764 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-18 13:14:43] 2025-11-18 21:14:09,831 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-18 13:14:43] 2025-11-18 21:14:09,831 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-18 13:14:43] 2025-11-18 21:14:09,832 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-18 13:14:43] 2025-11-18 21:14:09,832 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-18 13:14:43] 2025-11-18 21:14:09,832 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-18 13:14:43] 2025-11-18 21:14:09,832 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-18 13:14:43] 2025-11-18 21:14:09,832 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-18 13:14:43] 2025-11-18 21:14:09,832 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-18 13:14:43] 2025-11-18 21:14:09,832 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-18 13:14:43] 2025-11-18 21:14:09,832 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-18 13:14:43] 2025-11-18 21:14:09,832 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-18 13:14:43] 2025-11-18 21:14:09,832 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-18 13:14:43] 2025-11-18 21:14:09,832 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-18 13:14:43] 2025-11-18 21:14:09,832 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-18 13:14:43] 2025-11-18 21:14:09,832 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-18 13:14:43] 2025-11-18 21:14:09,832 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-18 13:14:43] 2025-11-18 21:14:09,832 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-18 13:14:43] 2025-11-18 21:14:09,832 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-18 13:14:43] 2025-11-18 21:14:09,832 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-18 13:14:43] 2025-11-18 21:14:09,833 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-18 13:14:43] 2025-11-18 21:14:09,833 | INFO     | job 6891601588 has completed (purged errors)
[2025-11-18 13:14:43] 2025-11-18 21:14:09,833 | INFO     | overall cleanup function is called
[2025-11-18 13:14:43] 2025-11-18 21:14:10,849 | INFO     | --- collectZombieJob: --- 10, [3546589]
[2025-11-18 13:14:43] 2025-11-18 21:14:10,849 | INFO     | zombie collector waiting for pid 3546589
[2025-11-18 13:14:43] 2025-11-18 21:14:10,849 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-18 13:14:43] 2025-11-18 21:14:10,849 | INFO     | collected zombie processes
[2025-11-18 13:14:43] 2025-11-18 21:14:10,849 | INFO     | will attempt to kill all subprocesses of pid=3546589
[2025-11-18 13:14:43] 2025-11-18 21:14:11,425 | INFO     | process IDs to be killed: [3546589] (in reverse order)
[2025-11-18 13:14:43] 2025-11-18 21:14:11,504 | WARNING  | found no corresponding commands to process id(s)
[2025-11-18 13:14:43] 2025-11-18 21:14:11,504 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-18 13:14:43] 2025-11-18 21:14:11,515 | INFO     | did not find any defunct processes belonging to 3546589
[2025-11-18 13:14:43] 2025-11-18 21:14:11,570 | INFO     | did not find any defunct processes belonging to 3546589
[2025-11-18 13:14:43] 2025-11-18 21:14:11,591 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-18 13:14:43] 2025-11-18 21:14:11,591 | INFO     | ready for new job
[2025-11-18 13:14:43] 2025-11-18 21:14:11,591 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-18 13:14:43] 2025-11-18 21:14:11,592 | INFO     | ***************************************
[2025-11-18 13:14:43] 2025-11-18 21:14:11,592 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-18 13:14:43] 2025-11-18 21:14:11,592 | INFO     | ***************************************
[2025-11-18 13:14:43] 2025-11-18 21:14:11,592 | INFO     | 
[2025-11-18 13:14:43] 2025-11-18 21:14:11,594 | INFO     | architecture information:
[2025-11-18 13:14:43] 2025-11-18 21:14:11,614 | INFO     | executing command: cat /etc/os-release
[2025-11-18 13:14:43] 2025-11-18 21:14:11,649 | INFO     | cat /etc/os-release:
[2025-11-18 13:14:43] NAME="CentOS Linux"
[2025-11-18 13:14:43] VERSION="7 (Core)"
[2025-11-18 13:14:43] ID="centos"
[2025-11-18 13:14:43] ID_LIKE="rhel fedora"
[2025-11-18 13:14:43] VERSION_ID="7"
[2025-11-18 13:14:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-18 13:14:43] ANSI_COLOR="0;31"
[2025-11-18 13:14:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-18 13:14:43] HOME_URL="https://www.centos.org/"
[2025-11-18 13:14:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-18 13:14:43] 
[2025-11-18 13:14:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-18 13:14:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-18 13:14:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-18 13:14:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-18 13:14:43] 
[2025-11-18 13:14:43] 2025-11-18 21:14:11,649 | INFO     | ***************************************
[2025-11-18 13:14:43] 2025-11-18 21:14:12,153 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-18 13:14:43] 2025-11-18 21:14:12,193 | INFO     | sufficient remaining disk space (2153402859520 B)
[2025-11-18 13:14:43] 2025-11-18 21:14:12,193 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-18 13:14:43] 2025-11-18 21:14:12,194 | INFO     | current server update state: UPDATING_FINAL
[2025-11-18 13:14:43] 2025-11-18 21:14:12,194 | INFO     | update_server=False
[2025-11-18 13:14:43] 2025-11-18 21:14:12,194 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-18 13:14:43] 2025-11-18 21:14:12,231 | INFO     | [monitor] cgroup control has ended
[2025-11-18 13:14:43] 2025-11-18 21:14:12,408 | INFO     | all job control threads have been joined
[2025-11-18 13:14:43] 2025-11-18 21:14:12,439 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-18 13:14:43] 2025-11-18 21:14:12,606 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-18 13:14:43] 2025-11-18 21:14:12,606 | INFO     | aborting loop
[2025-11-18 13:14:43] 2025-11-18 21:14:12,672 | INFO     | all payload control threads have been joined
[2025-11-18 13:14:43] 2025-11-18 21:14:12,833 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-18 13:14:43] 2025-11-18 21:14:13,200 | INFO     | [job] retrieve thread has finished
[2025-11-18 13:14:43] 2025-11-18 21:14:13,218 | INFO     | all data control threads have been joined
[2025-11-18 13:14:43] 2025-11-18 21:14:13,380 | INFO     | [payload] validate_post thread has finished
[2025-11-18 13:14:43] 2025-11-18 21:14:13,415 | INFO     | [job] control thread has finished
[2025-11-18 13:14:43] 2025-11-18 21:14:13,613 | INFO     | [job] job monitor thread has finished
[2025-11-18 13:14:43] 2025-11-18 21:14:13,669 | INFO     | [payload] failed_post thread has finished
[2025-11-18 13:14:43] 2025-11-18 21:14:13,678 | INFO     | [payload] control thread has finished
[2025-11-18 13:14:43] 2025-11-18 21:14:13,929 | INFO     | [payload] execute_payloads thread has finished
[2025-11-18 13:14:43] 2025-11-18 21:14:13,961 | INFO     | [payload] validate_pre thread has finished
[2025-11-18 13:14:43] 2025-11-18 21:14:14,216 | INFO     | [data] copytool_in thread has finished
[2025-11-18 13:14:43] 2025-11-18 21:14:14,224 | INFO     | [data] control thread has finished
[2025-11-18 13:14:43] 2025-11-18 21:14:14,308 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-18 13:14:43] 2025-11-18 21:14:14,362 | INFO     | [job] create_data_payload thread has finished
[2025-11-18 13:14:43] 2025-11-18 21:14:14,363 | INFO     | [job] validate thread has finished
[2025-11-18 13:14:43] 2025-11-18 21:14:14,363 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-18 13:14:43] 2025-11-18 21:14:14,840 | INFO     | [data] copytool_out thread has finished
[2025-11-18 13:14:43] 2025-11-18 21:14:15,314 | INFO     | [job] queue monitor thread has finished
[2025-11-18 13:14:43] 2025-11-18 21:14:16,448 | INFO     | [data] queue_monitor thread has finished
[2025-11-18 13:14:43] 2025-11-18 21:14:16,916 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140327203526464)>', '<ExcThread(monitor, started 140326438168320)>']
[2025-11-18 13:14:43] 2025-11-18 21:14:21,943 | INFO     | all workflow threads have been joined
[2025-11-18 13:14:43] 2025-11-18 21:14:21,943 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-18 13:14:43] 2025-11-18 21:14:21,943 | INFO     | traces error code: 0
[2025-11-18 13:14:43] 2025-11-18 21:14:21,943 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-18 13:14:43] 2025-11-18 21:14:41,832 | INFO     | PID=3539955 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-18 13:14:43] 2025-11-18 21:14:41,832 | INFO     | .. there are 21 such processes running
[2025-11-18 13:14:43] 2025-11-18 21:14:41,833 | INFO     | found 0 job(s) in 20 queues
[2025-11-18 13:14:43] 2025-11-18 21:14:41,833 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-18 13:14:43] 2025-11-18 21:14:41,833 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-18 13:14:43] 2025-11-18 21:14:41,833 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-18 13:14:43] 2025-11-18 21:14:41,833 | CRITICAL | thread 'MainThread' is not alive
[2025-11-18 13:14:43] 2025-11-18 21:14:41,833 | INFO     | [monitor] control thread has ended
[2025-11-18 13:14:43] 2025-11-18 21:14:42,373 [wrapper] ==== pilot stdout END ====
[2025-11-18 13:14:43] 2025-11-18 21:14:42,406 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-18 13:14:43] 2025-11-18 21:14:42,428 [wrapper] pilotpid: 3539955
[2025-11-18 13:14:43] 2025-11-18 21:14:42,434 [wrapper] Pilot exit status: 0
[2025-11-18 13:14:43] 2025-11-18 21:14:42,473 [wrapper] pandaids: 6891601588
[2025-11-18 13:14:43] 2025-11-18 21:14:42,548 [wrapper] cleanup supervisor_pilot 3539961 3539956
[2025-11-18 13:14:43] 2025-11-18 21:14:42,550 [wrapper] Test setup, not cleaning
[2025-11-18 13:14:43] 2025-11-18 21:14:42,552 [wrapper] apfmon messages muted
[2025-11-18 13:14:43] 2025-11-18 21:14:42,554 [wrapper] ==== wrapper stdout END ====
[2025-11-18 13:14:43] 2025-11-18 21:14:42,556 [wrapper] ==== wrapper stderr END ====
[2025-11-18 13:14:43]  *** Error codes and diagnostics ***
[2025-11-18 13:14:43]     "exeErrorCode": 65,
[2025-11-18 13:14:43]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-18 13:14:43]     "pilotErrorCode": 1305,
[2025-11-18 13:14:43]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-18 13:14:43]  *** Listing of results directory ***
[2025-11-18 13:14:43] total 405456
[2025-11-18 13:14:43] -rw-r--r--. 1 boinc boinc    576529 Nov 18 10:50 pilot3.tar.gz
[2025-11-18 13:14:43] -rw-r--r--. 1 boinc boinc      5112 Nov 18 11:13 queuedata.json
[2025-11-18 13:14:43] -rwx------. 1 boinc boinc     36292 Nov 18 11:14 runpilot2-wrapper.sh
[2025-11-18 13:14:43] -rw-r--r--. 1 boinc boinc       100 Nov 18 13:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-18 13:14:43] -rwxr-xr-x. 1 boinc boinc      7986 Nov 18 13:07 run_atlas
[2025-11-18 13:14:43] -rw-r--r--. 1 boinc boinc       105 Nov 18 13:07 job.xml
[2025-11-18 13:14:43] -rw-r--r--. 2 boinc boinc 410946239 Nov 18 13:07 EVNT.47493065._000835.pool.root.1
[2025-11-18 13:14:43] -rw-r--r--. 1 boinc boinc      6595 Nov 18 13:07 init_data.xml
[2025-11-18 13:14:43] -rw-r--r--. 2 boinc boinc     15120 Nov 18 13:07 start_atlas.sh
[2025-11-18 13:14:43] drwxrwx--x. 2 boinc boinc      4096 Nov 18 13:07 shared
[2025-11-18 13:14:43] -rw-r--r--. 2 boinc boinc    590098 Nov 18 13:07 input.tar.gz
[2025-11-18 13:14:43] -rw-r--r--. 1 boinc boinc         0 Nov 18 13:07 boinc_lockfile
[2025-11-18 13:14:43] -rw-r--r--. 1 boinc boinc      2772 Nov 18 13:07 pandaJob.out
[2025-11-18 13:14:43] -rw-------. 1 boinc boinc    992790 Nov 18 13:08 agis_schedconf.cvmfs.json
[2025-11-18 13:14:43] -rw-------. 1 boinc boinc   1525063 Nov 18 13:08 agis_ddmendpoints.agis.ALL.json
[2025-11-18 13:14:43] drwx------. 5 boinc boinc      4096 Nov 18 13:08 pilot3
[2025-11-18 13:14:43] -rw-r--r--. 1 boinc boinc       525 Nov 18 13:11 boinc_task_state.xml
[2025-11-18 13:14:43] -rw-------. 1 boinc boinc       996 Nov 18 13:11 memory_monitor_summary.json
[2025-11-18 13:14:43] -rw-------. 1 boinc boinc     49695 Nov 18 13:12 log.47493068._006992.job.log.tgz.1
[2025-11-18 13:14:43] -rw-------. 1 boinc boinc     10342 Nov 18 13:14 heartbeat.json
[2025-11-18 13:14:43] -rw-r--r--. 1 boinc boinc      8192 Nov 18 13:14 boinc_mmap_file
[2025-11-18 13:14:43] -rw-r--r--. 1 boinc boinc        23 Nov 18 13:14 wrapper_checkpoint.txt
[2025-11-18 13:14:43] -rw-------. 1 boinc boinc       893 Nov 18 13:14 pilotlog.txt
[2025-11-18 13:14:43] -rw-------. 1 boinc boinc        95 Nov 18 13:14 pilot_heartbeat.json
[2025-11-18 13:14:43] -rw-------. 1 boinc boinc    109601 Nov 18 13:14 log.47493068._006992.job.log.1
[2025-11-18 13:14:43] -rw-------. 1 boinc boinc       186 Nov 18 13:14 output.list
[2025-11-18 13:14:43] -rw-r--r--. 1 boinc boinc       620 Nov 18 13:14 runtime_log
[2025-11-18 13:14:43] -rw-------. 1 boinc boinc    184320 Nov 18 13:14 result.tar.gz
[2025-11-18 13:14:43] -rw-r--r--. 1 boinc boinc      8528 Nov 18 13:14 runtime_log.err
[2025-11-18 13:14:43] -rw-------. 1 boinc boinc       644 Nov 18 13:14 fMcNDmcKgf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm2lFKDmwOnVIm.diag
[2025-11-18 13:14:43] -rw-r--r--. 1 boinc boinc     22572 Nov 18 13:14 stderr.txt
[2025-11-18 13:14:43] No HITS result produced
[2025-11-18 13:14:43]  *** Contents of shared directory: ***
[2025-11-18 13:14:43] total 402096
[2025-11-18 13:14:43] -rw-r--r--. 2 boinc boinc 410946239 Nov 18 13:07 ATLAS.root_0
[2025-11-18 13:14:43] -rw-r--r--. 2 boinc boinc     15120 Nov 18 13:07 start_atlas.sh
[2025-11-18 13:14:43] -rw-r--r--. 2 boinc boinc    590098 Nov 18 13:07 input.tar.gz
[2025-11-18 13:14:43] -rw-------. 1 boinc boinc    184320 Nov 18 13:14 result.tar.gz
13:14:44 (3536325): run_atlas exited; CPU time 47.833761
13:14:44 (3536325): called boinc_finish(0)

</stderr_txt>
]]>

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