Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:52:14 (635199): wrapper (7.7.26015): starting
21:52:14 (635199): wrapper: running run_atlas (--nthreads 3)
[2025-11-18 21:52:14] Arguments: --nthreads 3
[2025-11-18 21:52:14] Threads: 3
[2025-11-18 21:52:14] Checking for CVMFS
[2025-11-18 21:52:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-18 21:52:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-18 21:52:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-18 21:52:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-18 21:52:14] 2.9.2.0 4099368 153 61736 153013 3 88 34152191 36864000 0 130560 0 2192258 99.937 136126 7521 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-18 21:52:14] CVMFS is ok
[2025-11-18 21:52:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-18 21:52:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-18 21:52:14] Further information can be found at the LHC@home message board.
[2025-11-18 21:52:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-18 21:52:14] Checking for apptainer binary...
[2025-11-18 21:52:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-18 21:52:14] Running /usr/bin/apptainer --version
[2025-11-18 21:52:14] apptainer version 1.4.1-1.1
[2025-11-18 21:52:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-18 21:52:14] thA335
[2025-11-18 21:52:14] apptainer works
[2025-11-18 21:52:14] Set ATHENA_PROC_NUMBER=3
[2025-11-18 21:52:14] Set ATHENA_CORE_NUMBER=3
[2025-11-18 21:52:14] Starting ATLAS job with PandaID=6891601287
[2025-11-18 21:52:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-18 21:56:34]  *** The last 200 lines of the pilot log: ***
[2025-11-18 21:56:34] ID_LIKE="rhel fedora"
[2025-11-18 21:56:34] VERSION_ID="7"
[2025-11-18 21:56:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-18 21:56:34] ANSI_COLOR="0;31"
[2025-11-18 21:56:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-18 21:56:34] HOME_URL="https://www.centos.org/"
[2025-11-18 21:56:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-18 21:56:34] 
[2025-11-18 21:56:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-18 21:56:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-18 21:56:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-18 21:56:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-18 21:56:34] 
[2025-11-18 21:56:34] 2025-11-18 20:55:41,723 | INFO     | ***************************************
[2025-11-18 21:56:34] 2025-11-18 20:55:42,227 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-18 21:56:34] 2025-11-18 20:55:42,240 | INFO     | sufficient remaining disk space (827907375104 B)
[2025-11-18 21:56:34] 2025-11-18 20:55:42,240 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-18 21:56:34] 2025-11-18 20:55:42,240 | INFO     | current server update state: UPDATING_FINAL
[2025-11-18 21:56:34] 2025-11-18 20:55:42,240 | INFO     | update_server=False
[2025-11-18 21:56:34] 2025-11-18 20:55:42,240 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-18 21:56:34] 2025-11-18 20:55:42,240 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-18 21:56:34] 2025-11-18 20:55:42,240 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-18 21:56:34] 2025-11-18 20:55:42,339 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-18 21:56:34] 2025-11-18 20:55:42,340 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-18 21:56:34] 2025-11-18 20:55:42,340 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-18 21:56:34] 2025-11-18 20:55:42,340 | INFO     | will abort loop
[2025-11-18 21:56:34] 2025-11-18 20:55:42,514 | INFO     | all data control threads have been joined
[2025-11-18 21:56:34] 2025-11-18 20:55:42,811 | INFO     | all payload control threads have been joined
[2025-11-18 21:56:34] 2025-11-18 20:55:43,242 | INFO     | [job] queue monitor thread has finished
[2025-11-18 21:56:34] 2025-11-18 20:55:43,245 | INFO     | [job] retrieve thread has finished
[2025-11-18 21:56:34] 2025-11-18 20:55:43,346 | INFO     | [job] job monitor thread has finished
[2025-11-18 21:56:34] 2025-11-18 20:55:43,415 | INFO     | all job control threads have been joined
[2025-11-18 21:56:34] 2025-11-18 20:55:43,451 | INFO     | [payload] validate_post thread has finished
[2025-11-18 21:56:34] 2025-11-18 20:55:43,521 | INFO     | [data] control thread has finished
[2025-11-18 21:56:34] 2025-11-18 20:55:43,817 | INFO     | [payload] control thread has finished
[2025-11-18 21:56:34] 2025-11-18 20:55:43,821 | INFO     | [data] copytool_in thread has finished
[2025-11-18 21:56:34] 2025-11-18 20:55:43,823 | INFO     | [job] validate thread has finished
[2025-11-18 21:56:34] 2025-11-18 20:55:43,906 | INFO     | [job] create_data_payload thread has finished
[2025-11-18 21:56:34] 2025-11-18 20:55:43,967 | INFO     | [payload] validate_pre thread has finished
[2025-11-18 21:56:34] 2025-11-18 20:55:43,994 | INFO     | [payload] failed_post thread has finished
[2025-11-18 21:56:34] 2025-11-18 20:55:44,246 | INFO     | [data] copytool_out thread has finished
[2025-11-18 21:56:34] 2025-11-18 20:55:44,409 | INFO     | [payload] execute_payloads thread has finished
[2025-11-18 21:56:34] 2025-11-18 20:55:44,420 | INFO     | [job] control thread has finished
[2025-11-18 21:56:34] 2025-11-18 20:55:44,507 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-18 21:56:34] 2025-11-18 20:55:44,692 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-18 21:56:34] 2025-11-18 20:55:48,514 | INFO     | [data] queue_monitor thread has finished
[2025-11-18 21:56:34] 2025-11-18 20:56:11,888 | INFO     | PID=638938 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-18 21:56:34] 2025-11-18 20:56:11,888 | INFO     | found 0 job(s) in 20 queues
[2025-11-18 21:56:34] 2025-11-18 20:56:11,888 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-18 21:56:34] 2025-11-18 20:56:11,888 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-18 21:56:34] 2025-11-18 20:56:27,018 | INFO     | [monitor] cgroup control has ended
[2025-11-18 21:56:34] 2025-11-18 20:56:28,369 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139623237936960)>', '<ExcThread(monitor, started 139622608795392)>']
[2025-11-18 21:56:34] 2025-11-18 20:56:28,978 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-18 21:56:34] 2025-11-18 20:56:28,979 | INFO     | [monitor] control thread has ended
[2025-11-18 21:56:34] 2025-11-18 20:56:33,395 | INFO     | all workflow threads have been joined
[2025-11-18 21:56:34] 2025-11-18 20:56:33,403 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-18 21:56:34] 2025-11-18 20:56:33,404 | INFO     | traces error code: 0
[2025-11-18 21:56:34] 2025-11-18 20:56:33,405 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-18 21:56:34] 2025-11-18 20:56:33,450 [wrapper] ==== pilot stdout END ====
[2025-11-18 21:56:34] 2025-11-18 20:56:33,453 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-18 21:56:34] 2025-11-18 20:56:33,456 [wrapper] pilotpid: 638938
[2025-11-18 21:56:34] 2025-11-18 20:56:33,459 [wrapper] Pilot exit status: 0
[2025-11-18 21:56:34] 2025-11-18 20:56:33,466 [wrapper] pandaids: 6891601287
[2025-11-18 21:56:34] 2025-11-18 20:56:33,482 [wrapper] cleanup supervisor_pilot  638944 638939
[2025-11-18 21:56:34] 2025-11-18 20:56:33,486 [wrapper] Test setup, not cleaning
[2025-11-18 21:56:34] 2025-11-18 20:56:33,488 [wrapper] apfmon messages muted
[2025-11-18 21:56:34] 2025-11-18 20:56:33,491 [wrapper] ==== wrapper stdout END ====
[2025-11-18 21:56:34] 2025-11-18 20:56:33,494 [wrapper] ==== wrapper stderr END ====
[2025-11-18 21:56:34]  *** Error codes and diagnostics ***
[2025-11-18 21:56:34]     "exeErrorCode": 65,
[2025-11-18 21:56:34]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-18 21:56:34]     "pilotErrorCode": 1305,
[2025-11-18 21:56:34]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-18 21:56:34]  *** Listing of results directory ***
[2025-11-18 21:56:34] total 402832
[2025-11-18 21:56:34] -rw-r--r-- 1 boinc boinc    576529 Nov 18 19:50 pilot3.tar.gz
[2025-11-18 21:56:34] -rw-r--r-- 1 boinc boinc      5112 Nov 18 20:05 queuedata.json
[2025-11-18 21:56:34] -rwx------ 1 boinc boinc     36292 Nov 18 20:08 runpilot2-wrapper.sh
[2025-11-18 21:56:34] -rw-r--r-- 1 boinc boinc       100 Nov 18 21:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-18 21:56:34] -rwxr-xr-x 1 boinc boinc      7986 Nov 18 21:52 run_atlas
[2025-11-18 21:56:34] -rw-r--r-- 1 boinc boinc       105 Nov 18 21:52 job.xml
[2025-11-18 21:56:34] -rw-r--r-- 2 boinc boinc 408297763 Nov 18 21:52 EVNT.47493065._000829.pool.root.1
[2025-11-18 21:56:34] -rw-r--r-- 2 boinc boinc    590102 Nov 18 21:52 input.tar.gz
[2025-11-18 21:56:34] -rw-r--r-- 2 boinc boinc     15120 Nov 18 21:52 start_atlas.sh
[2025-11-18 21:56:34] drwxrwx--x 2 boinc boinc      4096 Nov 18 21:52 shared
[2025-11-18 21:56:34] -rw-r--r-- 1 boinc boinc         0 Nov 18 21:52 boinc_setup_complete
[2025-11-18 21:56:34] -rw-r--r-- 1 boinc boinc      6193 Nov 18 21:52 init_data.xml
[2025-11-18 21:56:34] -rw-r--r-- 1 boinc boinc         0 Nov 18 21:52 boinc_lockfile
[2025-11-18 21:56:34] -rw-r--r-- 1 boinc boinc      2773 Nov 18 21:52 pandaJob.out
[2025-11-18 21:56:34] -rw------- 1 boinc boinc    992790 Nov 18 21:52 agis_schedconf.cvmfs.json
[2025-11-18 21:56:34] -rw------- 1 boinc boinc   1525063 Nov 18 21:52 agis_ddmendpoints.agis.ALL.json
[2025-11-18 21:56:34] drwx------ 5 boinc boinc      4096 Nov 18 21:52 pilot3
[2025-11-18 21:56:34] -rw-r--r-- 1 boinc boinc       523 Nov 18 21:53 boinc_task_state.xml
[2025-11-18 21:56:34] -rw------- 1 boinc boinc       984 Nov 18 21:53 memory_monitor_summary.json
[2025-11-18 21:56:34] -rw------- 1 boinc boinc     55977 Nov 18 21:53 log.47493068._006940.job.log.tgz.1
[2025-11-18 21:56:34] -rw------- 1 boinc boinc        95 Nov 18 21:55 pilot_heartbeat.json
[2025-11-18 21:56:34] -rw------- 1 boinc boinc      8398 Nov 18 21:55 heartbeat.json
[2025-11-18 21:56:34] -rw-r--r-- 1 boinc boinc        22 Nov 18 21:56 wrapper_checkpoint.txt
[2025-11-18 21:56:34] -rw-r--r-- 1 boinc boinc      8192 Nov 18 21:56 boinc_mmap_file
[2025-11-18 21:56:34] -rw------- 1 boinc boinc      4937 Nov 18 21:56 pilotlog.txt
[2025-11-18 21:56:34] -rw------- 1 boinc boinc     92263 Nov 18 21:56 log.47493068._006940.job.log.1
[2025-11-18 21:56:34] -rw------- 1 boinc boinc       186 Nov 18 21:56 output.list
[2025-11-18 21:56:34] -rw-r--r-- 1 boinc boinc       620 Nov 18 21:56 runtime_log
[2025-11-18 21:56:34] -rw------- 1 boinc boinc    163840 Nov 18 21:56 result.tar.gz
[2025-11-18 21:56:34] -rw-r--r-- 1 boinc boinc      8624 Nov 18 21:56 runtime_log.err
[2025-11-18 21:56:34] -rw------- 1 boinc boinc       649 Nov 18 21:56 UgIMDm3Egf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmnPGKDmzect1m.diag
[2025-11-18 21:56:34] -rw-r--r-- 1 boinc boinc      9191 Nov 18 21:56 stderr.txt
[2025-11-18 21:56:34] No HITS result produced
[2025-11-18 21:56:34]  *** Contents of shared directory: ***
[2025-11-18 21:56:34] total 399492
[2025-11-18 21:56:34] -rw-r--r-- 2 boinc boinc 408297763 Nov 18 21:52 ATLAS.root_0
[2025-11-18 21:56:34] -rw-r--r-- 2 boinc boinc    590102 Nov 18 21:52 input.tar.gz
[2025-11-18 21:56:34] -rw-r--r-- 2 boinc boinc     15120 Nov 18 21:52 start_atlas.sh
[2025-11-18 21:56:34] -rw------- 1 boinc boinc    163840 Nov 18 21:56 result.tar.gz
21:56:36 (635199): run_atlas exited; CPU time 31.082929
21:56:36 (635199): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN