Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:01:51 (29624): wrapper (7.7.26015): starting
00:01:51 (29624): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 00:01:51] Arguments: --nthreads 8
[2025-11-22 00:01:51] Threads: 8
[2025-11-22 00:01:51] Checking for CVMFS
[2025-11-22 00:01:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 00:01:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 00:01:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 00:01:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 00:01:53] 2.11.2.0 32329 278754 144060 153148 0 117 14952934 25165825 4632 130560 3 138330789 99.886 80241374 3144 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-22 00:01:53] CVMFS is ok
[2025-11-22 00:01:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 00:01:53] Checking for apptainer binary...
[2025-11-22 00:01:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 00:01:53] Running /usr/bin/apptainer --version
[2025-11-22 00:01:54] apptainer version 1.3.2-1.el7
[2025-11-22 00:01:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 00:02:06] cg-vwn362.simple-grid.lan
[2025-11-22 00:02:06] apptainer works
[2025-11-22 00:02:06] Set ATHENA_PROC_NUMBER=8
[2025-11-22 00:02:06] Set ATHENA_CORE_NUMBER=8
[2025-11-22 00:02:07] Starting ATLAS job with PandaID=6891584409
[2025-11-22 00:02:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 01:13:05]  *** The last 200 lines of the pilot log: ***
[2025-11-23 01:13:05] 2025-11-23 00:12:18,229 | INFO     | time since job start (90377s) is within the limit (172800.0s)
[2025-11-23 01:13:05] 2025-11-23 00:12:19,741 | INFO     | monitor loop #6078: job 0:6891584409 is in state 'finished'
[2025-11-23 01:13:05] 2025-11-23 00:12:19,741 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 01:13:05] 2025-11-23 00:12:20,240 | INFO     | time since job start (90379s) is within the limit (172800.0s)
[2025-11-23 01:13:05] 2025-11-23 00:12:22,245 | INFO     | monitor loop #6079: job 0:6891584409 is in state 'finished'
[2025-11-23 01:13:05] 2025-11-23 00:12:22,245 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 01:13:05] 2025-11-23 00:12:22,250 | INFO     | time since job start (90381s) is within the limit (172800.0s)
[2025-11-23 01:13:05] 2025-11-23 00:12:24,257 | INFO     | time since job start (90383s) is within the limit (172800.0s)
[2025-11-23 01:13:05] 2025-11-23 00:12:24,751 | INFO     | monitor loop #6080: job 0:6891584409 is in state 'finished'
[2025-11-23 01:13:05] 2025-11-23 00:12:24,751 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 01:13:05] 2025-11-23 00:12:26,264 | INFO     | time since job start (90385s) is within the limit (172800.0s)
[2025-11-23 01:13:05] 2025-11-23 00:12:27,256 | INFO     | monitor loop #6081: job 0:6891584409 is in state 'finished'
[2025-11-23 01:13:05] 2025-11-23 00:12:27,256 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 01:13:05] 2025-11-23 00:12:27,462 | INFO     | PID=1042 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-23 01:13:05] 2025-11-23 00:12:27,462 | INFO     | .. there are 9 such processes running
[2025-11-23 01:13:05] 2025-11-23 00:12:27,676 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 01:13:05] 2025-11-23 00:12:27,677 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-23 01:13:05] 2025-11-23 00:12:27,679 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6891584409/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 01:13:05] 2025-11-23 00:12:27,680 | INFO     | extracted standard info from prmon json
[2025-11-23 01:13:05] 2025-11-23 00:12:27,680 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 01:13:05] 2025-11-23 00:12:27,680 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 01:13:05] 2025-11-23 00:12:27,720 | INFO     | fitting pss+swap vs Time
[2025-11-23 01:13:05] 2025-11-23 00:12:27,723 | INFO     | sum of square deviations: 989011093788.7139
[2025-11-23 01:13:05] 2025-11-23 00:12:27,789 | INFO     | sum of deviations: 2529935360566.546
[2025-11-23 01:13:05] 2025-11-23 00:12:27,790 | INFO     | mean x: 1763811767.7894022
[2025-11-23 01:13:05] 2025-11-23 00:12:27,790 | INFO     | mean y: 2846478.188858696
[2025-11-23 01:13:05] 2025-11-23 00:12:27,790 | INFO     | intersect: -4509064246.310155
[2025-11-23 01:13:05] 2025-11-23 00:12:27,792 | INFO     | chi2: 21.036916049639036
[2025-11-23 01:13:05] 2025-11-23 00:12:27,794 | INFO     | sum of square deviations: 978967614580.373
[2025-11-23 01:13:05] 2025-11-23 00:12:27,853 | INFO     | sum of deviations: 3006810708688.6855
[2025-11-23 01:13:05] 2025-11-23 00:12:27,853 | INFO     | mean x: 1763811615.2937968
[2025-11-23 01:13:05] 2025-11-23 00:12:27,854 | INFO     | mean y: 2853717.5923653715
[2025-11-23 01:13:05] 2025-11-23 00:12:27,854 | INFO     | intersect: -5414534533.037518
[2025-11-23 01:13:05] 2025-11-23 00:12:27,856 | INFO     | chi2: 17.86668492235816
[2025-11-23 01:13:05] 2025-11-23 00:12:27,856 | INFO     | current chi2=17.86668492235816 (change=15.069847309369624 %)
[2025-11-23 01:13:05] 2025-11-23 00:12:27,856 | INFO     | right removable region: 1466
[2025-11-23 01:13:05] 2025-11-23 00:12:27,858 | INFO     | sum of square deviations: 978966456800.3735
[2025-11-23 01:13:05] 2025-11-23 00:12:27,921 | INFO     | sum of deviations: 1963048399640.2627
[2025-11-23 01:13:05] 2025-11-23 00:12:27,921 | INFO     | mean x: 1763811920.2937968
[2025-11-23 01:13:05] 2025-11-23 00:12:27,921 | INFO     | mean y: 2855082.8091342878
[2025-11-23 01:13:05] 2025-11-23 00:12:27,921 | INFO     | intersect: -3533985371.066808
[2025-11-23 01:13:05] 2025-11-23 00:12:27,923 | INFO     | chi2: 17.15364169398743
[2025-11-23 01:13:05] 2025-11-23 00:12:27,923 | INFO     | current chi2=17.15364169398743 (change=18.45933285320229 %)
[2025-11-23 01:13:05] 2025-11-23 00:12:27,923 | INFO     | left removable region: 10
[2025-11-23 01:13:05] 2025-11-23 00:12:27,925 | INFO     | sum of square deviations: 957109945542.8407
[2025-11-23 01:13:05] 2025-11-23 00:12:27,990 | INFO     | sum of deviations: 2320805102942.8755
[2025-11-23 01:13:05] 2025-11-23 00:12:27,991 | INFO     | mean x: 1763811889.8001373
[2025-11-23 01:13:05] 2025-11-23 00:12:27,991 | INFO     | mean y: 2867263.6353021977
[2025-11-23 01:13:05] 2025-11-23 00:12:27,991 | INFO     | intersect: -4274032849.609054
[2025-11-23 01:13:05] 2025-11-23 00:12:27,993 | INFO     | chi2: 12.716272614091663
[2025-11-23 01:13:05] 2025-11-23 00:12:27,993 | INFO     | current memory leak: 2.42 B/s (using 1456 data points, chi2=12.72)
[2025-11-23 01:13:05] 2025-11-23 00:12:27,995 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-23 01:13:05] 2025-11-23 00:12:27,995 | INFO     | ..............................
[2025-11-23 01:13:05] 2025-11-23 00:12:27,996 | INFO     | . Timing measurements:
[2025-11-23 01:13:05] 2025-11-23 00:12:27,996 | INFO     | . get job = 0 s
[2025-11-23 01:13:05] 2025-11-23 00:12:27,996 | INFO     | . initial setup = 12 s
[2025-11-23 01:13:05] 2025-11-23 00:12:27,996 | INFO     | . payload setup = 180 s
[2025-11-23 01:13:05] 2025-11-23 00:12:27,996 | INFO     | . stage-in = 0 s
[2025-11-23 01:13:05] 2025-11-23 00:12:27,996 | INFO     | . payload execution = 89901 s
[2025-11-23 01:13:05] 2025-11-23 00:12:27,996 | INFO     | . stage-out = 5 s
[2025-11-23 01:13:05] 2025-11-23 00:12:27,996 | INFO     | . log creation = 1 s
[2025-11-23 01:13:05] 2025-11-23 00:12:27,996 | INFO     | ..............................
[2025-11-23 01:13:05] 2025-11-23 00:12:28,464 | INFO     | time since job start (90387s) is within the limit (172800.0s)
[2025-11-23 01:13:05] 2025-11-23 00:12:28,535 | INFO     | 
[2025-11-23 01:13:05] 2025-11-23 00:12:28,535 | INFO     | job summary report
[2025-11-23 01:13:05] 2025-11-23 00:12:28,535 | INFO     | --------------------------------------------------
[2025-11-23 01:13:05] 2025-11-23 00:12:28,535 | INFO     | PanDA job id: 6891584409
[2025-11-23 01:13:05] 2025-11-23 00:12:28,535 | INFO     | task id: 47493068
[2025-11-23 01:13:05] 2025-11-23 00:12:28,536 | INFO     | errors: (none)
[2025-11-23 01:13:05] 2025-11-23 00:12:28,536 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 01:13:05] 2025-11-23 00:12:28,536 | INFO     | pilot state: finished 
[2025-11-23 01:13:05] 2025-11-23 00:12:28,536 | INFO     | transexitcode: 0
[2025-11-23 01:13:05] 2025-11-23 00:12:28,536 | INFO     | exeerrorcode: 0
[2025-11-23 01:13:05] 2025-11-23 00:12:28,536 | INFO     | exeerrordiag: 
[2025-11-23 01:13:05] 2025-11-23 00:12:28,536 | INFO     | exitcode: 0
[2025-11-23 01:13:05] 2025-11-23 00:12:28,536 | INFO     | exitmsg: OK
[2025-11-23 01:13:05] 2025-11-23 00:12:28,536 | INFO     | cpuconsumptiontime: 334033 s
[2025-11-23 01:13:05] 2025-11-23 00:12:28,536 | INFO     | nevents: 1000
[2025-11-23 01:13:05] 2025-11-23 00:12:28,536 | INFO     | neventsw: 0
[2025-11-23 01:13:05] 2025-11-23 00:12:28,536 | INFO     | pid: 7621
[2025-11-23 01:13:05] 2025-11-23 00:12:28,537 | INFO     | pgrp: 7621
[2025-11-23 01:13:05] 2025-11-23 00:12:28,537 | INFO     | corecount: 8
[2025-11-23 01:13:05] 2025-11-23 00:12:28,537 | INFO     | event service: False
[2025-11-23 01:13:05] 2025-11-23 00:12:28,537 | INFO     | sizes: {0: 2297968, 1: 2298653, 2: 2298852, 3: 2298852, 13: 2298880, 24: 2298936, 35: 2299092, 45: 2299120, 56: 2299148, 67: 2299176, 78: 2299204, 88: 2299540, 95:
[2025-11-23 01:13:05] 2025-11-23 00:12:28,537 | INFO     | --------------------------------------------------
[2025-11-23 01:13:05] 2025-11-23 00:12:28,537 | INFO     | 
[2025-11-23 01:13:05] 2025-11-23 00:12:28,537 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-11-23 01:13:05] 2025-11-23 00:12:29,007 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 01:13:05] 2025-11-23 00:12:29,008 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 01:13:05] 2025-11-23 00:12:29,008 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 01:13:05] 2025-11-23 00:12:29,008 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 01:13:05] 2025-11-23 00:12:29,008 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 01:13:05] 2025-11-23 00:12:29,008 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 01:13:05] 2025-11-23 00:12:29,008 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 01:13:05] 2025-11-23 00:12:29,008 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 01:13:05] 2025-11-23 00:12:29,008 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 01:13:05] 2025-11-23 00:12:29,009 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 01:13:05] 2025-11-23 00:12:29,009 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 01:13:05] 2025-11-23 00:12:29,009 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 01:13:05] 2025-11-23 00:12:29,009 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 01:13:05] 2025-11-23 00:12:29,009 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 01:13:05] 2025-11-23 00:12:29,009 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 01:13:05] 2025-11-23 00:12:29,009 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 01:13:05] 2025-11-23 00:12:29,009 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 01:13:05] 2025-11-23 00:12:29,009 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 01:13:05] 2025-11-23 00:12:29,009 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 01:13:05] 2025-11-23 00:12:29,009 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 01:13:05] 2025-11-23 00:12:29,010 | INFO     | job 6891584409 has completed (purged errors)
[2025-11-23 01:13:05] 2025-11-23 00:12:29,010 | INFO     | overall cleanup function is called
[2025-11-23 01:13:05] 2025-11-23 00:12:30,035 | INFO     | --- collectZombieJob: --- 10, [7621]
[2025-11-23 01:13:05] 2025-11-23 00:12:30,035 | INFO     | zombie collector waiting for pid 7621
[2025-11-23 01:13:05] 2025-11-23 00:12:30,035 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 01:13:05] 2025-11-23 00:12:30,035 | INFO     | collected zombie processes
[2025-11-23 01:13:05] 2025-11-23 00:12:30,036 | INFO     | will attempt to kill all subprocesses of pid=7621
[2025-11-23 01:13:05] 2025-11-23 00:12:30,151 | INFO     | process IDs to be killed: [7621] (in reverse order)
[2025-11-23 01:13:05] 2025-11-23 00:12:31,192 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 01:13:05] 2025-11-23 00:12:31,192 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 01:13:05] 2025-11-23 00:12:31,196 | INFO     | did not find any defunct processes belonging to 7621
[2025-11-23 01:13:05] 2025-11-23 00:12:31,199 | INFO     | did not find any defunct processes belonging to 7621
[2025-11-23 01:13:05] 2025-11-23 00:12:31,263 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 01:13:05] 2025-11-23 00:12:31,264 | INFO     | ready for new job
[2025-11-23 01:13:05] 2025-11-23 00:12:31,264 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 01:13:05] 2025-11-23 00:12:31,270 | INFO     | ***************************************
[2025-11-23 01:13:05] 2025-11-23 00:12:31,270 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 01:13:05] 2025-11-23 00:12:31,270 | INFO     | ***************************************
[2025-11-23 01:13:05] 2025-11-23 00:12:31,271 | INFO     | 
[2025-11-23 01:13:05] 2025-11-23 00:12:31,271 | INFO     | pilot is running in a VM
[2025-11-23 01:13:05] 2025-11-23 00:12:31,271 | INFO     | architecture information:
[2025-11-23 01:13:05] 2025-11-23 00:12:31,283 | INFO     | executing command: cat /etc/os-release
[2025-11-23 01:13:05] 2025-11-23 00:12:31,537 | INFO     | cat /etc/os-release:
[2025-11-23 01:13:05] NAME="CentOS Linux"
[2025-11-23 01:13:05] VERSION="7 (Core)"
[2025-11-23 01:13:05] ID="centos"
[2025-11-23 01:13:05] ID_LIKE="rhel fedora"
[2025-11-23 01:13:05] VERSION_ID="7"
[2025-11-23 01:13:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 01:13:05] ANSI_COLOR="0;31"
[2025-11-23 01:13:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 01:13:05] HOME_URL="https://www.centos.org/"
[2025-11-23 01:13:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 01:13:05] 
[2025-11-23 01:13:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 01:13:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 01:13:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 01:13:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 01:13:05] 
[2025-11-23 01:13:05] 2025-11-23 00:12:31,537 | INFO     | ***************************************
[2025-11-23 01:13:05] 2025-11-23 00:12:32,041 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-11-23 01:13:05] 2025-11-23 00:12:32,331 | INFO     | sufficient remaining disk space (494977155072 B)
[2025-11-23 01:13:05] 2025-11-23 00:12:32,332 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 01:13:05] 2025-11-23 00:12:32,332 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 01:13:05] 2025-11-23 00:12:32,332 | INFO     | update_server=False
[2025-11-23 01:13:05] 2025-11-23 00:12:32,332 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 01:13:05] 2025-11-23 00:12:32,333 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 01:13:05] 2025-11-23 00:12:32,375 | INFO     | all job control threads have been joined
[2025-11-23 01:13:05] 2025-11-23 00:12:32,886 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 01:13:05] 2025-11-23 00:12:33,141 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 01:13:05] 2025-11-23 00:12:33,246 | INFO     | all data control threads have been joined
[2025-11-23 01:13:05] 2025-11-23 00:12:33,279 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 01:13:05] 2025-11-23 00:12:33,279 | INFO     | aborting loop
[2025-11-23 01:13:05] 2025-11-23 00:12:33,338 | INFO     | [job] retrieve thread has finished
[2025-11-23 01:13:05] 2025-11-23 00:12:33,381 | INFO     | [job] control thread has finished
[2025-11-23 01:13:05] 2025-11-23 00:12:33,422 | INFO     | [data] copytool_in thread has finished
[2025-11-23 01:13:05] 2025-11-23 00:12:33,509 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 01:13:05] 2025-11-23 00:12:33,561 | INFO     | [payload] failed_post thread has finished
[2025-11-23 01:13:05] 2025-11-23 00:12:33,594 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 01:13:05] 2025-11-23 00:12:33,744 | INFO     | all payload control threads have been joined
[2025-11-23 01:13:05] 2025-11-23 00:12:33,825 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 01:13:05] 2025-11-23 00:12:34,147 | INFO     | [job] queue monitor thread has finished
[2025-11-23 01:13:05] 2025-11-23 00:12:34,252 | INFO     | [data] control thread has finished
[2025-11-23 01:13:05] 2025-11-23 00:12:34,284 | INFO     | [job] job monitor thread has finished
[2025-11-23 01:13:05] 2025-11-23 00:12:34,341 | INFO     | [data] copytool_out thread has finished
[2025-11-23 01:13:05] 2025-11-23 00:12:34,465 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 01:13:05] 2025-11-23 00:12:34,466 | INFO     | [payload] validate_post thread has finished
[2025-11-23 01:13:05] 2025-11-23 00:12:34,545 | INFO     | [job] validate thread has finished
[2025-11-23 01:13:05] 2025-11-23 00:12:34,750 | INFO     | [payload] control thread has finished
[2025-11-23 01:13:05] 2025-11-23 00:12:36,895 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 01:13:05] 2025-11-23 00:12:38,443 | INFO     | [monitor] cgroup control has ended
[2025-11-23 01:13:05] 2025-11-23 00:12:40,047 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139892858201920)>', '<ExcThread(monitor, started 139892419966720)>']
[2025-11-23 01:13:05] 2025-11-23 00:12:45,073 | INFO     | all workflow threads have been joined
[2025-11-23 01:13:05] 2025-11-23 00:12:45,073 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 01:13:05] 2025-11-23 00:12:45,074 | INFO     | traces error code: 0
[2025-11-23 01:13:05] 2025-11-23 00:12:45,074 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 01:13:05] 2025-11-23 00:13:01,664 | INFO     | PID=1042 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-23 01:13:05] 2025-11-23 00:13:01,665 | INFO     | .. there are 9 such processes running
[2025-11-23 01:13:05] 2025-11-23 00:13:01,665 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 01:13:05] 2025-11-23 00:13:01,665 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 01:13:05] 2025-11-23 00:13:01,665 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 01:13:05] 2025-11-23 00:13:01,665 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 01:13:05] 2025-11-23 00:13:01,665 | INFO     | [monitor] control thread has ended
[2025-11-23 01:13:05] 2025-11-23 00:13:02,042 [wrapper] ==== pilot stdout END ====
[2025-11-23 01:13:05] 2025-11-23 00:13:02,128 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 01:13:05] 2025-11-23 00:13:02,252 [wrapper] pilotpid: 1042
[2025-11-23 01:13:05] 2025-11-23 00:13:02,267 [wrapper] Pilot exit status: 0
[2025-11-23 01:13:05] 2025-11-23 00:13:02,541 [wrapper] pandaids: 6891584409
[2025-11-23 01:13:05] 2025-11-23 00:13:02,596 [wrapper] cleanup supervisor_pilot 21626 1043
[2025-11-23 01:13:05] 2025-11-23 00:13:02,615 [wrapper] Test setup, not cleaning
[2025-11-23 01:13:05] 2025-11-23 00:13:02,619 [wrapper] apfmon messages muted
[2025-11-23 01:13:05] 2025-11-23 00:13:02,629 [wrapper] ==== wrapper stdout END ====
[2025-11-23 01:13:05] 2025-11-23 00:13:02,687 [wrapper] ==== wrapper stderr END ====
[2025-11-23 01:13:05]  *** Error codes and diagnostics ***
[2025-11-23 01:13:05]     "exeErrorCode": 0,
[2025-11-23 01:13:05]     "exeErrorDiag": "",
[2025-11-23 01:13:05]     "pilotErrorCode": 0,
[2025-11-23 01:13:05]     "pilotErrorDiag": "",
[2025-11-23 01:13:05]  *** Listing of results directory ***
[2025-11-23 01:13:05] total 1315664
[2025-11-23 01:13:05] -rw-r--r--. 1 boinc boinc    576529 Nov 18 17:45 pilot3.tar.gz
[2025-11-23 01:13:05] -rw-r--r--. 1 boinc boinc      5112 Nov 18 18:15 queuedata.json
[2025-11-23 01:13:05] -rwx------. 1 boinc boinc     36292 Nov 18 18:15 runpilot2-wrapper.sh
[2025-11-23 01:13:05] -rw-r--r--. 1 boinc boinc       100 Nov 22 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 01:13:05] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 00:01 run_atlas
[2025-11-23 01:13:05] -rw-r--r--. 1 boinc boinc       105 Nov 22 00:01 job.xml
[2025-11-23 01:13:05] -rw-r--r--. 2 boinc boinc 408257668 Nov 22 00:01 EVNT.47493065._000457.pool.root.1
[2025-11-23 01:13:05] -rw-r--r--. 1 boinc boinc      6391 Nov 22 00:01 init_data.xml
[2025-11-23 01:13:05] -rw-r--r--. 2 boinc boinc     15120 Nov 22 00:01 start_atlas.sh
[2025-11-23 01:13:05] drwxrwx--x. 2 boinc boinc        68 Nov 22 00:01 shared
[2025-11-23 01:13:05] -rw-r--r--. 2 boinc boinc    590100 Nov 22 00:01 input.tar.gz
[2025-11-23 01:13:05] -rw-r--r--. 1 boinc boinc         0 Nov 22 00:01 boinc_lockfile
[2025-11-23 01:13:05] -rw-r--r--. 1 boinc boinc      2773 Nov 22 00:02 pandaJob.out
[2025-11-23 01:13:05] -rw-------. 1 boinc boinc    989798 Nov 22 00:05 agis_schedconf.cvmfs.json
[2025-11-23 01:13:05] drwx------. 5 boinc boinc      4096 Nov 22 00:06 pilot3
[2025-11-23 01:13:05] -rw-r--r--. 1 boinc boinc       533 Nov 23 00:45 boinc_task_state.xml
[2025-11-23 01:13:05] -rw-------. 1 boinc boinc 905963750 Nov 23 01:09 HITS.47493068._004567.pool.root.1
[2025-11-23 01:13:05] -rw-------. 1 boinc boinc      1030 Nov 23 01:10 memory_monitor_summary.json
[2025-11-23 01:13:05] -rw-------. 1 boinc boinc   1526164 Nov 23 01:10 agis_ddmendpoints.agis.ALL.json
[2025-11-23 01:13:05] -rw-------. 1 boinc boinc   2545057 Nov 23 01:10 log.47493068._004567.job.log.tgz.1
[2025-11-23 01:13:05] -rw-------. 1 boinc boinc        95 Nov 23 01:12 pilot_heartbeat.json
[2025-11-23 01:13:05] -rw-------. 1 boinc boinc      8632 Nov 23 01:12 heartbeat.json
[2025-11-23 01:13:05] -rw-r--r--. 1 boinc boinc        29 Nov 23 01:12 wrapper_checkpoint.txt
[2025-11-23 01:13:05] -rw-r--r--. 1 boinc boinc      8192 Nov 23 01:12 boinc_mmap_file
[2025-11-23 01:13:05] -rw-------. 1 boinc boinc       819 Nov 23 01:13 pilotlog.txt
[2025-11-23 01:13:05] -rw-------. 1 boinc boinc  12011348 Nov 23 01:13 log.47493068._004567.job.log.1
[2025-11-23 01:13:05] -rw-------. 1 boinc boinc       353 Nov 23 01:13 output.list
[2025-11-23 01:13:05] -rw-r--r--. 1 boinc boinc       620 Nov 23 01:13 runtime_log
[2025-11-23 01:13:05] -rw-------. 1 boinc boinc  14571520 Nov 23 01:13 result.tar.gz
[2025-11-23 01:13:05] -rw-r--r--. 1 boinc boinc      8703 Nov 23 01:13 runtime_log.err
[2025-11-23 01:13:05] -rw-------. 1 boinc boinc       662 Nov 23 01:13 QlHODmGUef8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRzFKDmSHvCDo.diag
[2025-11-23 01:13:05] -rw-r--r--. 1 boinc boinc     21495 Nov 23 01:13 stderr.txt
[2025-11-23 01:13:05] HITS file was successfully produced:
[2025-11-23 01:13:05] -rw-------. 1 boinc boinc 905963750 Nov 23 01:09 shared/HITS.pool.root.1
[2025-11-23 01:13:05]  *** Contents of shared directory: ***
[2025-11-23 01:13:05] total 1298252
[2025-11-23 01:13:05] -rw-r--r--. 2 boinc boinc 408257668 Nov 22 00:01 ATLAS.root_0
[2025-11-23 01:13:05] -rw-r--r--. 2 boinc boinc     15120 Nov 22 00:01 start_atlas.sh
[2025-11-23 01:13:05] -rw-r--r--. 2 boinc boinc    590100 Nov 22 00:01 input.tar.gz
[2025-11-23 01:13:05] -rw-------. 1 boinc boinc 905963750 Nov 23 01:09 HITS.pool.root.1
[2025-11-23 01:13:05] -rw-------. 1 boinc boinc  14571520 Nov 23 01:13 result.tar.gz
01:13:07 (29624): run_atlas exited; CPU time 334555.859454
01:13:07 (29624): called boinc_finish(0)

</stderr_txt>
]]>

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