Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:19:50 (3840): wrapper (7.7.26015): starting
00:19:50 (3840): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 00:19:50] Arguments: --nthreads 8
[2025-11-22 00:19:50] Threads: 8
[2025-11-22 00:19:50] Checking for CVMFS
[2025-11-22 00:19:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 00:19:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 00:19:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 00:19:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 00:19:53] 2.11.2.0 3755 278856 141756 153148 2 236 17173151 25165824 4582 130560 2 137676096 99.892 72002119 3229 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-22 00:19:53] CVMFS is ok
[2025-11-22 00:19:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 00:19:53] Checking for apptainer binary...
[2025-11-22 00:19:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 00:19:53] Running /usr/bin/apptainer --version
[2025-11-22 00:19:53] apptainer version 1.3.2-1.el7
[2025-11-22 00:19:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 00:20:02] cg-vwn224.simple-grid.lan
[2025-11-22 00:20:02] apptainer works
[2025-11-22 00:20:02] Set ATHENA_PROC_NUMBER=8
[2025-11-22 00:20:02] Set ATHENA_CORE_NUMBER=8
[2025-11-22 00:20:03] Starting ATLAS job with PandaID=6891576639
[2025-11-22 00:20:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 02:00:42]  *** The last 200 lines of the pilot log: ***
[2025-11-23 02:00:42] 2025-11-23 00:59:54,177 | INFO     | time since job start (92182s) is within the limit (172800.0s)
[2025-11-23 02:00:42] 2025-11-23 00:59:55,439 | INFO     | PID=7625 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-23 02:00:42] 2025-11-23 00:59:55,446 | INFO     | .. there are 9 such processes running
[2025-11-23 02:00:42] 2025-11-23 00:59:56,300 | INFO     | monitor loop #6175: job 0:6891576639 is in state 'finished'
[2025-11-23 02:00:42] 2025-11-23 00:59:56,301 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 02:00:42] 2025-11-23 00:59:56,446 | INFO     | time since job start (92184s) is within the limit (172800.0s)
[2025-11-23 02:00:42] 2025-11-23 00:59:58,453 | INFO     | time since job start (92186s) is within the limit (172800.0s)
[2025-11-23 02:00:42] 2025-11-23 00:59:58,810 | INFO     | monitor loop #6176: job 0:6891576639 is in state 'finished'
[2025-11-23 02:00:42] 2025-11-23 00:59:58,811 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 02:00:42] 2025-11-23 01:00:00,460 | INFO     | time since job start (92188s) is within the limit (172800.0s)
[2025-11-23 02:00:42] 2025-11-23 01:00:01,314 | INFO     | monitor loop #6177: job 0:6891576639 is in state 'finished'
[2025-11-23 02:00:42] 2025-11-23 01:00:01,315 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 02:00:42] 2025-11-23 01:00:02,468 | INFO     | time since job start (92190s) is within the limit (172800.0s)
[2025-11-23 02:00:42] 2025-11-23 01:00:03,682 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 02:00:42] 2025-11-23 01:00:03,683 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-23 02:00:42] 2025-11-23 01:00:03,685 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6891576639/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 02:00:42] 2025-11-23 01:00:03,686 | INFO     | extracted standard info from prmon json
[2025-11-23 02:00:42] 2025-11-23 01:00:03,686 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 02:00:42] 2025-11-23 01:00:03,686 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 02:00:42] 2025-11-23 01:00:03,715 | INFO     | fitting pss+swap vs Time
[2025-11-23 02:00:42] 2025-11-23 01:00:03,718 | INFO     | sum of square deviations: 1050722838360.2832
[2025-11-23 02:00:42] 2025-11-23 01:00:03,777 | INFO     | sum of deviations: 4188757135640.869
[2025-11-23 02:00:42] 2025-11-23 01:00:03,777 | INFO     | mean x: 1763813681.776964
[2025-11-23 02:00:42] 2025-11-23 01:00:03,777 | INFO     | mean y: 2841154.8861517976
[2025-11-23 02:00:42] 2025-11-23 01:00:03,778 | INFO     | intersect: -7028686928.213256
[2025-11-23 02:00:42] 2025-11-23 01:00:03,779 | INFO     | chi2: 23.493498131889847
[2025-11-23 02:00:42] 2025-11-23 01:00:03,782 | INFO     | sum of square deviations: 1040265078414.6023
[2025-11-23 02:00:42] 2025-11-23 01:00:03,846 | INFO     | sum of deviations: 4682089720815.432
[2025-11-23 02:00:42] 2025-11-23 01:00:03,847 | INFO     | mean x: 1763813529.281229
[2025-11-23 02:00:42] 2025-11-23 01:00:03,847 | INFO     | mean y: 2848348.0013360055
[2025-11-23 02:00:42] 2025-11-23 01:00:03,847 | INFO     | intersect: -7935833211.384275
[2025-11-23 02:00:42] 2025-11-23 01:00:03,849 | INFO     | chi2: 20.35751728006181
[2025-11-23 02:00:42] 2025-11-23 01:00:03,849 | INFO     | current chi2=20.35751728006181 (change=13.348292511498267 %)
[2025-11-23 02:00:42] 2025-11-23 01:00:03,850 | INFO     | right removable region: 1496
[2025-11-23 02:00:42] 2025-11-23 01:00:03,852 | INFO     | sum of square deviations: 1040263908434.6007
[2025-11-23 02:00:42] 2025-11-23 01:00:03,878 | INFO     | monitor loop #6178: job 0:6891576639 is in state 'finished'
[2025-11-23 02:00:42] 2025-11-23 01:00:03,908 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 02:00:42] 2025-11-23 01:00:03,946 | INFO     | sum of deviations: 3546108739889.58
[2025-11-23 02:00:42] 2025-11-23 01:00:03,946 | INFO     | mean x: 1763813834.281229
[2025-11-23 02:00:42] 2025-11-23 01:00:03,946 | INFO     | mean y: 2850525.2551770206
[2025-11-23 02:00:42] 2025-11-23 01:00:03,946 | INFO     | intersect: -6009734937.500053
[2025-11-23 02:00:42] 2025-11-23 01:00:03,948 | INFO     | chi2: 18.549429066713415
[2025-11-23 02:00:42] 2025-11-23 01:00:03,949 | INFO     | current chi2=18.549429066713415 (change=21.04441423504063 %)
[2025-11-23 02:00:42] 2025-11-23 01:00:03,949 | INFO     | left removable region: 10
[2025-11-23 02:00:42] 2025-11-23 01:00:03,951 | INFO     | sum of square deviations: 1017500433953.9128
[2025-11-23 02:00:42] 2025-11-23 01:00:04,017 | INFO     | sum of deviations: 3595980367117.7676
[2025-11-23 02:00:42] 2025-11-23 01:00:04,017 | INFO     | mean x: 1763813803.7907133
[2025-11-23 02:00:42] 2025-11-23 01:00:04,017 | INFO     | mean y: 2867552.954239569
[2025-11-23 02:00:42] 2025-11-23 01:00:04,017 | INFO     | intersect: -6230682427.005771
[2025-11-23 02:00:42] 2025-11-23 01:00:04,019 | INFO     | chi2: 11.078420730241165
[2025-11-23 02:00:42] 2025-11-23 01:00:04,019 | INFO     | current memory leak: 3.53 B/s (using 1486 data points, chi2=11.08)
[2025-11-23 02:00:42] 2025-11-23 01:00:04,022 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-23 02:00:42] 2025-11-23 01:00:04,023 | INFO     | ..............................
[2025-11-23 02:00:42] 2025-11-23 01:00:04,023 | INFO     | . Timing measurements:
[2025-11-23 02:00:42] 2025-11-23 01:00:04,023 | INFO     | . get job = 0 s
[2025-11-23 02:00:42] 2025-11-23 01:00:04,023 | INFO     | . initial setup = 12 s
[2025-11-23 02:00:42] 2025-11-23 01:00:04,023 | INFO     | . payload setup = 133 s
[2025-11-23 02:00:42] 2025-11-23 01:00:04,023 | INFO     | . stage-in = 0 s
[2025-11-23 02:00:42] 2025-11-23 01:00:04,023 | INFO     | . payload execution = 91744 s
[2025-11-23 02:00:42] 2025-11-23 01:00:04,023 | INFO     | . stage-out = 7 s
[2025-11-23 02:00:42] 2025-11-23 01:00:04,024 | INFO     | . log creation = 1 s
[2025-11-23 02:00:42] 2025-11-23 01:00:04,024 | INFO     | ..............................
[2025-11-23 02:00:42] 2025-11-23 01:00:04,180 | INFO     | 
[2025-11-23 02:00:42] 2025-11-23 01:00:04,181 | INFO     | job summary report
[2025-11-23 02:00:42] 2025-11-23 01:00:04,181 | INFO     | --------------------------------------------------
[2025-11-23 02:00:42] 2025-11-23 01:00:04,181 | INFO     | PanDA job id: 6891576639
[2025-11-23 02:00:42] 2025-11-23 01:00:04,181 | INFO     | task id: 47493068
[2025-11-23 02:00:42] 2025-11-23 01:00:04,181 | INFO     | errors: (none)
[2025-11-23 02:00:42] 2025-11-23 01:00:04,181 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 02:00:42] 2025-11-23 01:00:04,181 | INFO     | pilot state: finished 
[2025-11-23 02:00:42] 2025-11-23 01:00:04,181 | INFO     | transexitcode: 0
[2025-11-23 02:00:42] 2025-11-23 01:00:04,181 | INFO     | exeerrorcode: 0
[2025-11-23 02:00:42] 2025-11-23 01:00:04,181 | INFO     | exeerrordiag: 
[2025-11-23 02:00:42] 2025-11-23 01:00:04,182 | INFO     | exitcode: 0
[2025-11-23 02:00:42] 2025-11-23 01:00:04,182 | INFO     | exitmsg: OK
[2025-11-23 02:00:42] 2025-11-23 01:00:04,182 | INFO     | cpuconsumptiontime: 339931 s
[2025-11-23 02:00:42] 2025-11-23 01:00:04,182 | INFO     | nevents: 1000
[2025-11-23 02:00:42] 2025-11-23 01:00:04,182 | INFO     | neventsw: 0
[2025-11-23 02:00:42] 2025-11-23 01:00:04,182 | INFO     | pid: 14202
[2025-11-23 02:00:42] 2025-11-23 01:00:04,182 | INFO     | pgrp: 14202
[2025-11-23 02:00:42] 2025-11-23 01:00:04,182 | INFO     | corecount: 8
[2025-11-23 02:00:42] 2025-11-23 01:00:04,182 | INFO     | event service: False
[2025-11-23 02:00:42] 2025-11-23 01:00:04,182 | INFO     | sizes: {0: 2298569, 1: 2298824, 2: 2298824, 12: 2298852, 23: 2298880, 34: 2298908, 45: 2299064, 56: 2299092, 66: 2299120, 77: 2299148, 88: 2299204, 99: 2299512, 10
[2025-11-23 02:00:42] 2025-11-23 01:00:04,182 | INFO     | --------------------------------------------------
[2025-11-23 02:00:42] 2025-11-23 01:00:04,182 | INFO     | 
[2025-11-23 02:00:42] 2025-11-23 01:00:04,183 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-11-23 02:00:42] 2025-11-23 01:00:04,477 | INFO     | time since job start (92192s) is within the limit (172800.0s)
[2025-11-23 02:00:42] 2025-11-23 01:00:04,832 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 02:00:42] 2025-11-23 01:00:04,832 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 02:00:42] 2025-11-23 01:00:04,832 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 02:00:42] 2025-11-23 01:00:04,832 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 02:00:42] 2025-11-23 01:00:04,832 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 02:00:42] 2025-11-23 01:00:04,833 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 02:00:42] 2025-11-23 01:00:04,833 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 02:00:42] 2025-11-23 01:00:04,833 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 02:00:42] 2025-11-23 01:00:04,833 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 02:00:42] 2025-11-23 01:00:04,833 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 02:00:42] 2025-11-23 01:00:04,833 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 02:00:42] 2025-11-23 01:00:04,833 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 02:00:42] 2025-11-23 01:00:04,833 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 02:00:42] 2025-11-23 01:00:04,833 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 02:00:42] 2025-11-23 01:00:04,833 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 02:00:42] 2025-11-23 01:00:04,833 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 02:00:42] 2025-11-23 01:00:04,834 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 02:00:42] 2025-11-23 01:00:04,834 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 02:00:42] 2025-11-23 01:00:04,834 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 02:00:42] 2025-11-23 01:00:04,834 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 02:00:42] 2025-11-23 01:00:04,834 | INFO     | job 6891576639 has completed (purged errors)
[2025-11-23 02:00:42] 2025-11-23 01:00:04,834 | INFO     | overall cleanup function is called
[2025-11-23 02:00:42] 2025-11-23 01:00:05,858 | INFO     | --- collectZombieJob: --- 10, [14202]
[2025-11-23 02:00:42] 2025-11-23 01:00:05,859 | INFO     | zombie collector waiting for pid 14202
[2025-11-23 02:00:42] 2025-11-23 01:00:05,859 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 02:00:42] 2025-11-23 01:00:05,859 | INFO     | collected zombie processes
[2025-11-23 02:00:42] 2025-11-23 01:00:05,859 | INFO     | will attempt to kill all subprocesses of pid=14202
[2025-11-23 02:00:42] 2025-11-23 01:00:05,990 | INFO     | process IDs to be killed: [14202] (in reverse order)
[2025-11-23 02:00:42] 2025-11-23 01:00:06,709 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 02:00:42] 2025-11-23 01:00:06,709 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 02:00:42] 2025-11-23 01:00:06,713 | INFO     | did not find any defunct processes belonging to 14202
[2025-11-23 02:00:42] 2025-11-23 01:00:06,717 | INFO     | did not find any defunct processes belonging to 14202
[2025-11-23 02:00:42] 2025-11-23 01:00:06,764 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 02:00:42] 2025-11-23 01:00:06,764 | INFO     | ready for new job
[2025-11-23 02:00:42] 2025-11-23 01:00:06,764 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 02:00:42] 2025-11-23 01:00:06,771 | INFO     | ***************************************
[2025-11-23 02:00:42] 2025-11-23 01:00:06,771 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 02:00:42] 2025-11-23 01:00:06,771 | INFO     | ***************************************
[2025-11-23 02:00:42] 2025-11-23 01:00:06,771 | INFO     | 
[2025-11-23 02:00:42] 2025-11-23 01:00:06,772 | INFO     | pilot is running in a VM
[2025-11-23 02:00:42] 2025-11-23 01:00:06,772 | INFO     | architecture information:
[2025-11-23 02:00:42] 2025-11-23 01:00:06,783 | INFO     | executing command: cat /etc/os-release
[2025-11-23 02:00:42] 2025-11-23 01:00:07,142 | INFO     | cat /etc/os-release:
[2025-11-23 02:00:42] NAME="CentOS Linux"
[2025-11-23 02:00:42] VERSION="7 (Core)"
[2025-11-23 02:00:42] ID="centos"
[2025-11-23 02:00:42] ID_LIKE="rhel fedora"
[2025-11-23 02:00:42] VERSION_ID="7"
[2025-11-23 02:00:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 02:00:42] ANSI_COLOR="0;31"
[2025-11-23 02:00:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 02:00:42] HOME_URL="https://www.centos.org/"
[2025-11-23 02:00:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 02:00:42] 
[2025-11-23 02:00:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 02:00:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 02:00:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 02:00:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 02:00:42] 
[2025-11-23 02:00:42] 2025-11-23 01:00:07,142 | INFO     | ***************************************
[2025-11-23 02:00:42] 2025-11-23 01:00:07,646 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-11-23 02:00:42] 2025-11-23 01:00:07,929 | INFO     | sufficient remaining disk space (495004418048 B)
[2025-11-23 02:00:42] 2025-11-23 01:00:07,930 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 02:00:42] 2025-11-23 01:00:07,930 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 02:00:42] 2025-11-23 01:00:07,930 | INFO     | update_server=False
[2025-11-23 02:00:42] 2025-11-23 01:00:07,930 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 02:00:42] 2025-11-23 01:00:07,930 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 02:00:42] 2025-11-23 01:00:07,930 | INFO     | aborting loop
[2025-11-23 02:00:42] 2025-11-23 01:00:07,931 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 02:00:42] 2025-11-23 01:00:08,122 | INFO     | all data control threads have been joined
[2025-11-23 02:00:42] 2025-11-23 01:00:08,409 | INFO     | all payload control threads have been joined
[2025-11-23 02:00:42] 2025-11-23 01:00:08,936 | INFO     | [job] retrieve thread has finished
[2025-11-23 02:00:42] 2025-11-23 01:00:08,937 | INFO     | [job] job monitor thread has finished
[2025-11-23 02:00:42] 2025-11-23 01:00:09,128 | INFO     | [data] control thread has finished
[2025-11-23 02:00:42] 2025-11-23 01:00:09,192 | INFO     | all job control threads have been joined
[2025-11-23 02:00:42] 2025-11-23 01:00:09,193 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 02:00:42] 2025-11-23 01:00:09,292 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 02:00:42] 2025-11-23 01:00:09,331 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 02:00:42] 2025-11-23 01:00:09,394 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 02:00:42] 2025-11-23 01:00:09,415 | INFO     | [payload] control thread has finished
[2025-11-23 02:00:42] 2025-11-23 01:00:09,639 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 02:00:42] 2025-11-23 01:00:09,910 | INFO     | [payload] validate_post thread has finished
[2025-11-23 02:00:42] 2025-11-23 01:00:09,938 | INFO     | [data] copytool_out thread has finished
[2025-11-23 02:00:42] 2025-11-23 01:00:09,949 | INFO     | [job] validate thread has finished
[2025-11-23 02:00:42] 2025-11-23 01:00:10,198 | INFO     | [job] control thread has finished
[2025-11-23 02:00:42] 2025-11-23 01:00:10,199 | INFO     | [job] queue monitor thread has finished
[2025-11-23 02:00:42] 2025-11-23 01:00:10,270 | INFO     | [data] copytool_in thread has finished
[2025-11-23 02:00:42] 2025-11-23 01:00:10,467 | INFO     | [payload] failed_post thread has finished
[2025-11-23 02:00:42] 2025-11-23 01:00:11,180 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 02:00:42] 2025-11-23 01:00:13,770 | INFO     | [monitor] cgroup control has ended
[2025-11-23 02:00:42] 2025-11-23 01:00:15,189 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 02:00:42] 2025-11-23 01:00:17,269 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139672653776704)>', '<ExcThread(monitor, started 139671992526592)>']
[2025-11-23 02:00:42] 2025-11-23 01:00:22,295 | INFO     | all workflow threads have been joined
[2025-11-23 02:00:42] 2025-11-23 01:00:22,296 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 02:00:42] 2025-11-23 01:00:22,296 | INFO     | traces error code: 0
[2025-11-23 02:00:42] 2025-11-23 01:00:22,296 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 02:00:42] 2025-11-23 01:00:37,700 | INFO     | PID=7625 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-23 02:00:42] 2025-11-23 01:00:37,700 | INFO     | .. there are 9 such processes running
[2025-11-23 02:00:42] 2025-11-23 01:00:37,700 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 02:00:42] 2025-11-23 01:00:37,700 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 02:00:42] 2025-11-23 01:00:37,701 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 02:00:42] 2025-11-23 01:00:37,701 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 02:00:42] 2025-11-23 01:00:37,701 | INFO     | [monitor] control thread has ended
[2025-11-23 02:00:42] 2025-11-23 01:00:38,047 [wrapper] ==== pilot stdout END ====
[2025-11-23 02:00:42] 2025-11-23 01:00:38,097 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 02:00:42] 2025-11-23 01:00:38,219 [wrapper] pilotpid: 7625
[2025-11-23 02:00:42] 2025-11-23 01:00:38,262 [wrapper] Pilot exit status: 0
[2025-11-23 02:00:42] 2025-11-23 01:00:38,376 [wrapper] pandaids: 6891576639
[2025-11-23 02:00:42] 2025-11-23 01:00:39,480 [wrapper] cleanup supervisor_pilot 14426 7626
[2025-11-23 02:00:42] 2025-11-23 01:00:39,522 [wrapper] Test setup, not cleaning
[2025-11-23 02:00:42] 2025-11-23 01:00:39,577 [wrapper] apfmon messages muted
[2025-11-23 02:00:42] 2025-11-23 01:00:39,670 [wrapper] ==== wrapper stdout END ====
[2025-11-23 02:00:42] 2025-11-23 01:00:39,748 [wrapper] ==== wrapper stderr END ====
[2025-11-23 02:00:42]  *** Error codes and diagnostics ***
[2025-11-23 02:00:42]     "exeErrorCode": 0,
[2025-11-23 02:00:42]     "exeErrorDiag": "",
[2025-11-23 02:00:42]     "pilotErrorCode": 0,
[2025-11-23 02:00:42]     "pilotErrorDiag": "",
[2025-11-23 02:00:42]  *** Listing of results directory ***
[2025-11-23 02:00:42] total 1330796
[2025-11-23 02:00:42] -rw-r--r--. 1 boinc boinc    576529 Nov 18 17:24 pilot3.tar.gz
[2025-11-23 02:00:42] -rwx------. 1 boinc boinc     36292 Nov 18 17:43 runpilot2-wrapper.sh
[2025-11-23 02:00:42] -rw-r--r--. 1 boinc boinc      5112 Nov 18 17:43 queuedata.json
[2025-11-23 02:00:42] -rw-r--r--. 1 boinc boinc       100 Nov 22 00:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 02:00:42] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 00:19 run_atlas
[2025-11-23 02:00:42] -rw-r--r--. 1 boinc boinc       105 Nov 22 00:19 job.xml
[2025-11-23 02:00:42] -rw-r--r--. 1 boinc boinc      6391 Nov 22 00:19 init_data.xml
[2025-11-23 02:00:42] -rw-r--r--. 2 boinc boinc 408395941 Nov 22 00:19 EVNT.47493065._000374.pool.root.1
[2025-11-23 02:00:42] -rw-r--r--. 2 boinc boinc     15120 Nov 22 00:19 start_atlas.sh
[2025-11-23 02:00:42] drwxrwx--x. 2 boinc boinc        68 Nov 22 00:19 shared
[2025-11-23 02:00:42] -rw-r--r--. 2 boinc boinc    590096 Nov 22 00:19 input.tar.gz
[2025-11-23 02:00:42] -rw-r--r--. 1 boinc boinc         0 Nov 22 00:19 boinc_lockfile
[2025-11-23 02:00:42] -rw-r--r--. 1 boinc boinc      2773 Nov 22 00:20 pandaJob.out
[2025-11-23 02:00:42] -rw-------. 1 boinc boinc    989798 Nov 22 00:23 agis_schedconf.cvmfs.json
[2025-11-23 02:00:42] drwx------. 5 boinc boinc      4096 Nov 22 00:23 pilot3
[2025-11-23 02:00:42] -rw-r--r--. 1 boinc boinc       533 Nov 23 01:34 boinc_task_state.xml
[2025-11-23 02:00:42] -rw-------. 1 boinc boinc 920776388 Nov 23 01:57 HITS.47493068._003734.pool.root.1
[2025-11-23 02:00:42] -rw-------. 1 boinc boinc      1031 Nov 23 01:58 memory_monitor_summary.json
[2025-11-23 02:00:42] -rw-------. 1 boinc boinc   1526164 Nov 23 01:58 agis_ddmendpoints.agis.ALL.json
[2025-11-23 02:00:42] -rw-------. 1 boinc boinc   2569086 Nov 23 01:58 log.47493068._003734.job.log.tgz.1
[2025-11-23 02:00:42] -rw-------. 1 boinc boinc        95 Nov 23 01:59 pilot_heartbeat.json
[2025-11-23 02:00:42] -rw-------. 1 boinc boinc      8630 Nov 23 02:00 heartbeat.json
[2025-11-23 02:00:42] -rw-r--r--. 1 boinc boinc      8192 Nov 23 02:00 boinc_mmap_file
[2025-11-23 02:00:42] -rw-r--r--. 1 boinc boinc        29 Nov 23 02:00 wrapper_checkpoint.txt
[2025-11-23 02:00:42] -rw-------. 1 boinc boinc       819 Nov 23 02:00 pilotlog.txt
[2025-11-23 02:00:42] -rw-------. 1 boinc boinc  12261876 Nov 23 02:00 log.47493068._003734.job.log.1
[2025-11-23 02:00:42] -rw-------. 1 boinc boinc       353 Nov 23 02:00 output.list
[2025-11-23 02:00:42] -rw-r--r--. 1 boinc boinc       620 Nov 23 02:00 runtime_log
[2025-11-23 02:00:42] -rw-------. 1 boinc boinc  14848000 Nov 23 02:00 result.tar.gz
[2025-11-23 02:00:42] -rw-r--r--. 1 boinc boinc      8703 Nov 23 02:00 runtime_log.err
[2025-11-23 02:00:42] -rw-------. 1 boinc boinc       662 Nov 23 02:00 LyOMDmDzdf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmprFKDm2aq09m.diag
[2025-11-23 02:00:42] -rw-r--r--. 1 boinc boinc     21501 Nov 23 02:00 stderr.txt
[2025-11-23 02:00:42] HITS file was successfully produced:
[2025-11-23 02:00:42] -rw-------. 1 boinc boinc 920776388 Nov 23 01:57 shared/HITS.pool.root.1
[2025-11-23 02:00:42]  *** Contents of shared directory: ***
[2025-11-23 02:00:42] total 1313120
[2025-11-23 02:00:42] -rw-r--r--. 2 boinc boinc 408395941 Nov 22 00:19 ATLAS.root_0
[2025-11-23 02:00:42] -rw-r--r--. 2 boinc boinc     15120 Nov 22 00:19 start_atlas.sh
[2025-11-23 02:00:42] -rw-r--r--. 2 boinc boinc    590096 Nov 22 00:19 input.tar.gz
[2025-11-23 02:00:42] -rw-------. 1 boinc boinc 920776388 Nov 23 01:57 HITS.pool.root.1
[2025-11-23 02:00:42] -rw-------. 1 boinc boinc  14848000 Nov 23 02:00 result.tar.gz
02:00:43 (3840): run_atlas exited; CPU time 340496.193225
02:00:43 (3840): called boinc_finish(0)

</stderr_txt>
]]>

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