Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:45:45 (657744): wrapper (7.7.26015): starting
10:45:45 (657744): wrapper: running run_atlas (--nthreads 3)
[2025-11-19 10:45:45] Arguments: --nthreads 3
[2025-11-19 10:45:45] Threads: 3
[2025-11-19 10:45:45] Checking for CVMFS
[2025-11-19 10:45:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 10:45:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 10:45:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 10:45:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 10:45:46] 2.9.2.0 528461 952 56904 153037 1 81 33741591 36864001 0 130560 0 352866 99.446 226148 8676 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-19 10:45:46] CVMFS is ok
[2025-11-19 10:45:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 10:45:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 10:45:46] Further information can be found at the LHC@home message board.
[2025-11-19 10:45:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 10:45:46] Checking for apptainer binary...
[2025-11-19 10:45:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 10:45:46] Running /usr/bin/apptainer --version
[2025-11-19 10:45:46] apptainer version 1.4.1-1.1
[2025-11-19 10:45:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 10:45:46] magicA246a
[2025-11-19 10:45:46] apptainer works
[2025-11-19 10:45:46] Set ATHENA_PROC_NUMBER=3
[2025-11-19 10:45:46] Set ATHENA_CORE_NUMBER=3
[2025-11-19 10:45:46] Starting ATLAS job with PandaID=6891598826
[2025-11-19 10:45:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-19 18:35:38]  *** The last 200 lines of the pilot log: ***
[2025-11-19 18:35:38] 
[2025-11-19 18:35:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-19 18:35:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-19 18:35:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-19 18:35:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-19 18:35:38] 
[2025-11-19 18:35:38] 2025-11-19 17:35:06,891 | INFO     | ***************************************
[2025-11-19 18:35:38] 2025-11-19 17:35:07,394 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-19 18:35:38] 2025-11-19 17:35:07,407 | INFO     | sufficient remaining disk space (267416240128 B)
[2025-11-19 18:35:38] 2025-11-19 17:35:07,407 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-19 18:35:38] 2025-11-19 17:35:07,407 | INFO     | current server update state: UPDATING_FINAL
[2025-11-19 18:35:38] 2025-11-19 17:35:07,407 | INFO     | update_server=False
[2025-11-19 18:35:38] 2025-11-19 17:35:07,407 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-19 18:35:38] 2025-11-19 17:35:07,407 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-19 18:35:38] 2025-11-19 17:35:07,620 | INFO     | all data control threads have been joined
[2025-11-19 18:35:38] 2025-11-19 17:35:07,726 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-19 18:35:38] 2025-11-19 17:35:07,726 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-19 18:35:38] 2025-11-19 17:35:07,726 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-19 18:35:38] 2025-11-19 17:35:07,726 | INFO     | will abort loop
[2025-11-19 18:35:38] 2025-11-19 17:35:07,836 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-19 18:35:38] 2025-11-19 17:35:08,286 | INFO     | all payload control threads have been joined
[2025-11-19 18:35:38] 2025-11-19 17:35:08,359 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-19 18:35:38] 2025-11-19 17:35:08,413 | INFO     | [job] retrieve thread has finished
[2025-11-19 18:35:38] 2025-11-19 17:35:08,413 | INFO     | [job] queue monitor thread has finished
[2025-11-19 18:35:38] 2025-11-19 17:35:08,522 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-19 18:35:38] 2025-11-19 17:35:08,626 | INFO     | [data] control thread has finished
[2025-11-19 18:35:38] 2025-11-19 17:35:08,651 | INFO     | all job control threads have been joined
[2025-11-19 18:35:38] 2025-11-19 17:35:08,728 | INFO     | [payload] validate_post thread has finished
[2025-11-19 18:35:38] 2025-11-19 17:35:08,732 | INFO     | [job] job monitor thread has finished
[2025-11-19 18:35:38] 2025-11-19 17:35:09,019 | INFO     | [payload] failed_post thread has finished
[2025-11-19 18:35:38] 2025-11-19 17:35:09,291 | INFO     | [payload] control thread has finished
[2025-11-19 18:35:38] 2025-11-19 17:35:09,350 | INFO     | [data] copytool_in thread has finished
[2025-11-19 18:35:38] 2025-11-19 17:35:09,653 | INFO     | [job] control thread has finished
[2025-11-19 18:35:38] 2025-11-19 17:35:09,699 | INFO     | [job] validate thread has finished
[2025-11-19 18:35:38] 2025-11-19 17:35:09,788 | INFO     | [payload] validate_pre thread has finished
[2025-11-19 18:35:38] 2025-11-19 17:35:09,795 | INFO     | [job] create_data_payload thread has finished
[2025-11-19 18:35:38] 2025-11-19 17:35:09,804 | INFO     | [payload] execute_payloads thread has finished
[2025-11-19 18:35:38] 2025-11-19 17:35:09,842 | INFO     | [data] copytool_out thread has finished
[2025-11-19 18:35:38] 2025-11-19 17:35:12,366 | INFO     | [data] queue_monitor thread has finished
[2025-11-19 18:35:38] 2025-11-19 17:35:25,751 | INFO     | [monitor] cgroup control has ended
[2025-11-19 18:35:38] 2025-11-19 17:35:26,050 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140650018457408)>', '<ExcThread(monitor, started 140649147909888)>']
[2025-11-19 18:35:38] 2025-11-19 17:35:31,076 | INFO     | all workflow threads have been joined
[2025-11-19 18:35:38] 2025-11-19 17:35:31,076 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-19 18:35:38] 2025-11-19 17:35:31,077 | INFO     | traces error code: 0
[2025-11-19 18:35:38] 2025-11-19 17:35:31,077 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-19 18:35:38] 2025-11-19 17:35:38,454 | INFO     | PID=661462 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-19 18:35:38] 2025-11-19 17:35:38,455 | INFO     | found 0 job(s) in 20 queues
[2025-11-19 18:35:38] 2025-11-19 17:35:38,455 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-19 18:35:38] 2025-11-19 17:35:38,455 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-19 18:35:38] 2025-11-19 17:35:38,455 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-19 18:35:38] 2025-11-19 17:35:38,455 | INFO     | [monitor] control thread has ended
[2025-11-19 18:35:38] 2025-11-19 17:35:38,504 [wrapper] ==== pilot stdout END ====
[2025-11-19 18:35:38] 2025-11-19 17:35:38,506 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-19 18:35:38] 2025-11-19 17:35:38,509 [wrapper] pilotpid: 661462
[2025-11-19 18:35:38] 2025-11-19 17:35:38,511 [wrapper] Pilot exit status: 0
[2025-11-19 18:35:38] 2025-11-19 17:35:38,518 [wrapper] pandaids: 6891598826
[2025-11-19 18:35:38] 2025-11-19 17:35:38,534 [wrapper] cleanup supervisor_pilot  725184 661463
[2025-11-19 18:35:38] 2025-11-19 17:35:38,537 [wrapper] Test setup, not cleaning
[2025-11-19 18:35:38] 2025-11-19 17:35:38,539 [wrapper] apfmon messages muted
[2025-11-19 18:35:38] 2025-11-19 17:35:38,541 [wrapper] ==== wrapper stdout END ====
[2025-11-19 18:35:38] 2025-11-19 17:35:38,543 [wrapper] ==== wrapper stderr END ====
[2025-11-19 18:35:38]  *** Error codes and diagnostics ***
[2025-11-19 18:35:38]     "exeErrorCode": 0,
[2025-11-19 18:35:38]     "exeErrorDiag": "",
[2025-11-19 18:35:38]     "pilotErrorCode": 0,
[2025-11-19 18:35:38]     "pilotErrorDiag": "",
[2025-11-19 18:35:38]  *** Listing of results directory ***
[2025-11-19 18:35:38] total 1297964
[2025-11-19 18:35:38] -rw-r--r-- 1 boinc boinc    576529 Nov 18 19:50 pilot3.tar.gz
[2025-11-19 18:35:38] -rw-r--r-- 1 boinc boinc      5112 Nov 18 20:00 queuedata.json
[2025-11-19 18:35:38] -rwx------ 1 boinc boinc     36292 Nov 18 20:01 runpilot2-wrapper.sh
[2025-11-19 18:35:38] -rw-r--r-- 1 boinc boinc       100 Nov 19 10:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-19 18:35:38] -rwxr-xr-x 1 boinc boinc      7986 Nov 19 10:45 run_atlas
[2025-11-19 18:35:38] -rw-r--r-- 1 boinc boinc       105 Nov 19 10:45 job.xml
[2025-11-19 18:35:38] -rw-r--r-- 2 boinc boinc 408642339 Nov 19 10:45 EVNT.47493065._000809.pool.root.1
[2025-11-19 18:35:38] -rw-r--r-- 2 boinc boinc    590103 Nov 19 10:45 input.tar.gz
[2025-11-19 18:35:38] -rw-r--r-- 2 boinc boinc     15120 Nov 19 10:45 start_atlas.sh
[2025-11-19 18:35:38] drwxrwx--x 2 boinc boinc      4096 Nov 19 10:45 shared
[2025-11-19 18:35:38] -rw-r--r-- 1 boinc boinc         0 Nov 19 10:45 boinc_setup_complete
[2025-11-19 18:35:38] -rw-r--r-- 1 boinc boinc      6446 Nov 19 10:45 init_data.xml
[2025-11-19 18:35:38] -rw-r--r-- 1 boinc boinc         0 Nov 19 10:45 boinc_lockfile
[2025-11-19 18:35:38] -rw-r--r-- 1 boinc boinc      2773 Nov 19 10:45 pandaJob.out
[2025-11-19 18:35:38] -rw------- 1 boinc boinc    989279 Nov 19 10:45 agis_schedconf.cvmfs.json
[2025-11-19 18:35:38] drwx------ 5 boinc boinc      4096 Nov 19 10:45 pilot3
[2025-11-19 18:35:38] -rw-r--r-- 1 boinc boinc       531 Nov 19 18:31 boinc_task_state.xml
[2025-11-19 18:35:38] -rw------- 1 boinc boinc 906328308 Nov 19 18:34 HITS.47493068._006735.pool.root.1
[2025-11-19 18:35:38] -rw------- 1 boinc boinc      1022 Nov 19 18:34 memory_monitor_summary.json
[2025-11-19 18:35:38] -rw------- 1 boinc boinc   1525063 Nov 19 18:35 agis_ddmendpoints.agis.ALL.json
[2025-11-19 18:35:38] -rw------- 1 boinc boinc   1158813 Nov 19 18:35 log.47493068._006735.job.log.tgz.1
[2025-11-19 18:35:38] -rw------- 1 boinc boinc      8568 Nov 19 18:35 heartbeat.json
[2025-11-19 18:35:38] -rw-r--r-- 1 boinc boinc        28 Nov 19 18:35 wrapper_checkpoint.txt
[2025-11-19 18:35:38] -rw-r--r-- 1 boinc boinc      8192 Nov 19 18:35 boinc_mmap_file
[2025-11-19 18:35:38] -rw------- 1 boinc boinc       746 Nov 19 18:35 pilotlog.txt
[2025-11-19 18:35:38] -rw------- 1 boinc boinc        95 Nov 19 18:35 pilot_heartbeat.json
[2025-11-19 18:35:38] -rw------- 1 boinc boinc   3959435 Nov 19 18:35 log.47493068._006735.job.log.1
[2025-11-19 18:35:38] -rw------- 1 boinc boinc       353 Nov 19 18:35 output.list
[2025-11-19 18:35:38] -rw-r--r-- 1 boinc boinc       620 Nov 19 18:35 runtime_log
[2025-11-19 18:35:38] -rw------- 1 boinc boinc   5140480 Nov 19 18:35 result.tar.gz
[2025-11-19 18:35:38] -rw-r--r-- 1 boinc boinc      8798 Nov 19 18:35 runtime_log.err
[2025-11-19 18:35:38] -rw------- 1 boinc boinc       669 Nov 19 18:35 dxjMDm37ff8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmQkFKDmtFt71m.diag
[2025-11-19 18:35:38] -rw-r--r-- 1 boinc boinc      8461 Nov 19 18:35 stderr.txt
[2025-11-19 18:35:38] HITS file was successfully produced:
[2025-11-19 18:35:38] -rw------- 1 boinc boinc 906328308 Nov 19 18:34 shared/HITS.pool.root.1
[2025-11-19 18:35:38]  *** Contents of shared directory: ***
[2025-11-19 18:35:38] total 1289780
[2025-11-19 18:35:38] -rw-r--r-- 2 boinc boinc 408642339 Nov 19 10:45 ATLAS.root_0
[2025-11-19 18:35:38] -rw-r--r-- 2 boinc boinc    590103 Nov 19 10:45 input.tar.gz
[2025-11-19 18:35:38] -rw-r--r-- 2 boinc boinc     15120 Nov 19 10:45 start_atlas.sh
[2025-11-19 18:35:38] -rw------- 1 boinc boinc 906328308 Nov 19 18:34 HITS.pool.root.1
[2025-11-19 18:35:38] -rw------- 1 boinc boinc   5140480 Nov 19 18:35 result.tar.gz
18:35:40 (657744): run_atlas exited; CPU time 83124.194006
18:35:40 (657744): called boinc_finish(0)

</stderr_txt>
]]>

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