Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:43:30 (593535): wrapper (7.7.26015): starting
21:43:30 (593535): wrapper: running run_atlas (--nthreads 3)
[2025-11-18 21:43:30] Arguments: --nthreads 3
[2025-11-18 21:43:30] Threads: 3
[2025-11-18 21:43:30] Checking for CVMFS
[2025-11-18 21:43:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-18 21:43:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-18 21:43:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-18 21:43:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-18 21:43:30] 2.9.2.0 4099368 144 61744 153013 3 88 34152191 36864000 0 130560 0 2066984 99.933 136124 7531 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-18 21:43:30] CVMFS is ok
[2025-11-18 21:43:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-18 21:43:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-18 21:43:30] Further information can be found at the LHC@home message board.
[2025-11-18 21:43:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-18 21:43:30] Checking for apptainer binary...
[2025-11-18 21:43:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-18 21:43:30] Running /usr/bin/apptainer --version
[2025-11-18 21:43:30] apptainer version 1.4.1-1.1
[2025-11-18 21:43:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-18 21:43:30] thA335
[2025-11-18 21:43:30] apptainer works
[2025-11-18 21:43:30] Set ATHENA_PROC_NUMBER=3
[2025-11-18 21:43:30] Set ATHENA_CORE_NUMBER=3
[2025-11-18 21:43:30] Starting ATLAS job with PandaID=6891598819
[2025-11-18 21:43:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-18 21:47:47]  *** The last 200 lines of the pilot log: ***
[2025-11-18 21:47:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-18 21:47:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-18 21:47:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-18 21:47:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-18 21:47:47] 
[2025-11-18 21:47:47] 2025-11-18 20:46:53,871 | INFO     | ***************************************
[2025-11-18 21:47:47] 2025-11-18 20:46:54,374 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-18 21:47:47] 2025-11-18 20:46:54,388 | INFO     | sufficient remaining disk space (827495284736 B)
[2025-11-18 21:47:47] 2025-11-18 20:46:54,388 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-18 21:47:47] 2025-11-18 20:46:54,388 | INFO     | current server update state: UPDATING_FINAL
[2025-11-18 21:47:47] 2025-11-18 20:46:54,388 | INFO     | update_server=False
[2025-11-18 21:47:47] 2025-11-18 20:46:54,388 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-18 21:47:47] 2025-11-18 20:46:54,388 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-18 21:47:47] 2025-11-18 20:46:54,389 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-18 21:47:47] 2025-11-18 20:46:54,807 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-18 21:47:47] 2025-11-18 20:46:54,808 | INFO     | aborting loop
[2025-11-18 21:47:47] 2025-11-18 20:46:55,278 | INFO     | all payload control threads have been joined
[2025-11-18 21:47:47] 2025-11-18 20:46:55,374 | INFO     | all data control threads have been joined
[2025-11-18 21:47:47] 2025-11-18 20:46:55,394 | INFO     | [job] queue monitor thread has finished
[2025-11-18 21:47:47] 2025-11-18 20:46:55,395 | INFO     | [job] retrieve thread has finished
[2025-11-18 21:47:47] 2025-11-18 20:46:55,675 | INFO     | all job control threads have been joined
[2025-11-18 21:47:47] 2025-11-18 20:46:55,691 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-18 21:47:47] 2025-11-18 20:46:55,814 | INFO     | [job] job monitor thread has finished
[2025-11-18 21:47:47] 2025-11-18 20:46:55,842 | INFO     | [payload] validate_post thread has finished
[2025-11-18 21:47:47] 2025-11-18 20:46:55,941 | INFO     | [data] copytool_in thread has finished
[2025-11-18 21:47:47] 2025-11-18 20:46:56,127 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-18 21:47:47] 2025-11-18 20:46:56,285 | INFO     | [payload] control thread has finished
[2025-11-18 21:47:47] 2025-11-18 20:46:56,313 | INFO     | [job] validate thread has finished
[2025-11-18 21:47:47] 2025-11-18 20:46:56,380 | INFO     | [data] control thread has finished
[2025-11-18 21:47:47] 2025-11-18 20:46:56,401 | INFO     | [job] create_data_payload thread has finished
[2025-11-18 21:47:47] 2025-11-18 20:46:56,401 | INFO     | [payload] execute_payloads thread has finished
[2025-11-18 21:47:47] 2025-11-18 20:46:56,464 | INFO     | [payload] validate_pre thread has finished
[2025-11-18 21:47:47] 2025-11-18 20:46:56,681 | INFO     | [job] control thread has finished
[2025-11-18 21:47:47] 2025-11-18 20:46:56,880 | INFO     | [payload] failed_post thread has finished
[2025-11-18 21:47:47] 2025-11-18 20:46:57,697 | INFO     | [data] copytool_out thread has finished
[2025-11-18 21:47:47] 2025-11-18 20:46:58,395 | INFO     | [data] queue_monitor thread has finished
[2025-11-18 21:47:47] 2025-11-18 20:47:23,946 | INFO     | PID=597269 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-18 21:47:47] 2025-11-18 20:47:23,947 | INFO     | found 0 job(s) in 20 queues
[2025-11-18 21:47:47] 2025-11-18 20:47:23,947 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-18 21:47:47] 2025-11-18 20:47:23,947 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-18 21:47:47] 2025-11-18 20:47:41,147 | INFO     | [monitor] cgroup control has ended
[2025-11-18 21:47:47] 2025-11-18 20:47:42,153 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139747109287744)>', '<ExcThread(monitor, started 139746474972928)>']
[2025-11-18 21:47:47] 2025-11-18 20:47:43,048 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-18 21:47:47] 2025-11-18 20:47:43,049 | INFO     | [monitor] control thread has ended
[2025-11-18 21:47:47] 2025-11-18 20:47:47,179 | INFO     | all workflow threads have been joined
[2025-11-18 21:47:47] 2025-11-18 20:47:47,180 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-18 21:47:47] 2025-11-18 20:47:47,180 | INFO     | traces error code: 0
[2025-11-18 21:47:47] 2025-11-18 20:47:47,181 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-18 21:47:47] 2025-11-18 20:47:47,227 [wrapper] ==== pilot stdout END ====
[2025-11-18 21:47:47] 2025-11-18 20:47:47,230 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-18 21:47:47] 2025-11-18 20:47:47,233 [wrapper] pilotpid: 597269
[2025-11-18 21:47:47] 2025-11-18 20:47:47,236 [wrapper] Pilot exit status: 0
[2025-11-18 21:47:47] 2025-11-18 20:47:47,243 [wrapper] pandaids: 6891598819
[2025-11-18 21:47:47] 2025-11-18 20:47:47,260 [wrapper] cleanup supervisor_pilot  597275 597270
[2025-11-18 21:47:47] 2025-11-18 20:47:47,263 [wrapper] Test setup, not cleaning
[2025-11-18 21:47:47] 2025-11-18 20:47:47,266 [wrapper] apfmon messages muted
[2025-11-18 21:47:47] 2025-11-18 20:47:47,269 [wrapper] ==== wrapper stdout END ====
[2025-11-18 21:47:47] 2025-11-18 20:47:47,272 [wrapper] ==== wrapper stderr END ====
[2025-11-18 21:47:47]  *** Error codes and diagnostics ***
[2025-11-18 21:47:47]     "exeErrorCode": 65,
[2025-11-18 21:47:47]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-18 21:47:47]     "pilotErrorCode": 1305,
[2025-11-18 21:47:47]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-18 21:47:47]  *** Listing of results directory ***
[2025-11-18 21:47:47] total 404224
[2025-11-18 21:47:47] -rw-r--r-- 1 boinc boinc    576529 Nov 18 19:50 pilot3.tar.gz
[2025-11-18 21:47:47] -rw-r--r-- 1 boinc boinc      5112 Nov 18 20:00 queuedata.json
[2025-11-18 21:47:47] -rwx------ 1 boinc boinc     36292 Nov 18 20:01 runpilot2-wrapper.sh
[2025-11-18 21:47:47] -rw-r--r-- 1 boinc boinc       100 Nov 18 21:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-18 21:47:47] -rwxr-xr-x 1 boinc boinc      7986 Nov 18 21:43 run_atlas
[2025-11-18 21:47:47] -rw-r--r-- 1 boinc boinc       105 Nov 18 21:43 job.xml
[2025-11-18 21:47:47] -rw-r--r-- 2 boinc boinc 409726364 Nov 18 21:43 EVNT.47493065._000808.pool.root.1
[2025-11-18 21:47:47] -rw-r--r-- 2 boinc boinc    590098 Nov 18 21:43 input.tar.gz
[2025-11-18 21:47:47] -rw-r--r-- 2 boinc boinc     15120 Nov 18 21:43 start_atlas.sh
[2025-11-18 21:47:47] drwxrwx--x 2 boinc boinc      4096 Nov 18 21:43 shared
[2025-11-18 21:47:47] -rw-r--r-- 1 boinc boinc         0 Nov 18 21:43 boinc_setup_complete
[2025-11-18 21:47:47] -rw-r--r-- 1 boinc boinc      6193 Nov 18 21:43 init_data.xml
[2025-11-18 21:47:47] -rw-r--r-- 1 boinc boinc         0 Nov 18 21:43 boinc_lockfile
[2025-11-18 21:47:47] -rw-r--r-- 1 boinc boinc      2773 Nov 18 21:43 pandaJob.out
[2025-11-18 21:47:47] -rw------- 1 boinc boinc    992790 Nov 18 21:43 agis_schedconf.cvmfs.json
[2025-11-18 21:47:47] -rw------- 1 boinc boinc   1525063 Nov 18 21:43 agis_ddmendpoints.agis.ALL.json
[2025-11-18 21:47:47] drwx------ 5 boinc boinc      4096 Nov 18 21:43 pilot3
[2025-11-18 21:47:47] -rw-r--r-- 1 boinc boinc       522 Nov 18 21:44 boinc_task_state.xml
[2025-11-18 21:47:47] -rw------- 1 boinc boinc       947 Nov 18 21:44 memory_monitor_summary.json
[2025-11-18 21:47:47] -rw------- 1 boinc boinc     56086 Nov 18 21:44 log.47493068._006728.job.log.tgz.1
[2025-11-18 21:47:47] -rw------- 1 boinc boinc        95 Nov 18 21:46 pilot_heartbeat.json
[2025-11-18 21:47:47] -rw------- 1 boinc boinc      8400 Nov 18 21:46 heartbeat.json
[2025-11-18 21:47:47] -rw-r--r-- 1 boinc boinc      8192 Nov 18 21:47 boinc_mmap_file
[2025-11-18 21:47:47] -rw-r--r-- 1 boinc boinc        22 Nov 18 21:47 wrapper_checkpoint.txt
[2025-11-18 21:47:47] -rw------- 1 boinc boinc      4751 Nov 18 21:47 pilotlog.txt
[2025-11-18 21:47:47] -rw------- 1 boinc boinc     93015 Nov 18 21:47 log.47493068._006728.job.log.1
[2025-11-18 21:47:47] -rw------- 1 boinc boinc       186 Nov 18 21:47 output.list
[2025-11-18 21:47:47] -rw-r--r-- 1 boinc boinc       620 Nov 18 21:47 runtime_log
[2025-11-18 21:47:47] -rw------- 1 boinc boinc    163840 Nov 18 21:47 result.tar.gz
[2025-11-18 21:47:47] -rw-r--r-- 1 boinc boinc      8624 Nov 18 21:47 runtime_log.err
[2025-11-18 21:47:47] -rw------- 1 boinc boinc       649 Nov 18 21:47 quaMDm37ff8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKkFKDmbafZtm.diag
[2025-11-18 21:47:47] -rw-r--r-- 1 boinc boinc      8582 Nov 18 21:47 stderr.txt
[2025-11-18 21:47:47] No HITS result produced
[2025-11-18 21:47:47]  *** Contents of shared directory: ***
[2025-11-18 21:47:47] total 400884
[2025-11-18 21:47:47] -rw-r--r-- 2 boinc boinc 409726364 Nov 18 21:43 ATLAS.root_0
[2025-11-18 21:47:47] -rw-r--r-- 2 boinc boinc    590098 Nov 18 21:43 input.tar.gz
[2025-11-18 21:47:47] -rw-r--r-- 2 boinc boinc     15120 Nov 18 21:43 start_atlas.sh
[2025-11-18 21:47:47] -rw------- 1 boinc boinc    163840 Nov 18 21:47 result.tar.gz
21:47:48 (593535): run_atlas exited; CPU time 31.169817
21:47:48 (593535): called boinc_finish(0)

</stderr_txt>
]]>

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