Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:04:52 (16357): wrapper (7.7.26015): starting
00:04:52 (16357): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 00:04:52] Arguments: --nthreads 8
[2025-11-22 00:04:52] Threads: 8
[2025-11-22 00:04:52] Checking for CVMFS
[2025-11-22 00:04:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 00:04:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 00:04:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 00:04:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 00:04:54] 2.11.2.0 26867 278644 141016 153148 1 179 14080114 25165825 4632 130560 2 133637307 99.878 73806829 2927 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-22 00:04:54] CVMFS is ok
[2025-11-22 00:04:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 00:04:54] Checking for apptainer binary...
[2025-11-22 00:04:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 00:04:54] Running /usr/bin/apptainer --version
[2025-11-22 00:04:55] apptainer version 1.3.2-1.el7
[2025-11-22 00:04:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 00:05:05] cg-vwn435.simple-grid.lan
[2025-11-22 00:05:05] apptainer works
[2025-11-22 00:05:05] Set ATHENA_PROC_NUMBER=8
[2025-11-22 00:05:05] Set ATHENA_CORE_NUMBER=8
[2025-11-22 00:05:06] Starting ATLAS job with PandaID=6891598149
[2025-11-22 00:05:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 01:45:04]  *** The last 200 lines of the pilot log: ***
[2025-11-23 01:45:04] 2025-11-23 00:44:07,995 | INFO     | time since job start (92092s) is within the limit (172800.0s)
[2025-11-23 01:45:04] 2025-11-23 00:44:09,224 | INFO     | PID=20171 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 01:45:04] 2025-11-23 00:44:09,225 | INFO     | .. there are 9 such processes running
[2025-11-23 01:45:04] 2025-11-23 00:44:09,813 | INFO     | monitor loop #6186: job 0:6891598149 is in state 'finished'
[2025-11-23 01:45:04] 2025-11-23 00:44:09,814 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 01:45:04] 2025-11-23 00:44:10,226 | INFO     | time since job start (92095s) is within the limit (172800.0s)
[2025-11-23 01:45:04] 2025-11-23 00:44:12,234 | INFO     | time since job start (92097s) is within the limit (172800.0s)
[2025-11-23 01:45:04] 2025-11-23 00:44:12,317 | INFO     | monitor loop #6187: job 0:6891598149 is in state 'finished'
[2025-11-23 01:45:04] 2025-11-23 00:44:12,318 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 01:45:04] 2025-11-23 00:44:14,240 | INFO     | time since job start (92099s) is within the limit (172800.0s)
[2025-11-23 01:45:04] 2025-11-23 00:44:14,240 | INFO     | 92112s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-23 01:45:04] 2025-11-23 00:44:14,828 | INFO     | monitor loop #6188: job 0:6891598149 is in state 'finished'
[2025-11-23 01:45:04] 2025-11-23 00:44:14,828 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 01:45:04] 2025-11-23 00:44:16,252 | INFO     | time since job start (92101s) is within the limit (172800.0s)
[2025-11-23 01:45:04] 2025-11-23 00:44:16,853 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 01:45:04] 2025-11-23 00:44:16,854 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-23 01:45:04] 2025-11-23 00:44:16,856 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6891598149/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 01:45:04] 2025-11-23 00:44:16,857 | INFO     | extracted standard info from prmon json
[2025-11-23 01:45:04] 2025-11-23 00:44:16,857 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 01:45:04] 2025-11-23 00:44:16,857 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 01:45:04] 2025-11-23 00:44:16,886 | INFO     | fitting pss+swap vs Time
[2025-11-23 01:45:04] 2025-11-23 00:44:16,889 | INFO     | sum of square deviations: 1042352990531.4921
[2025-11-23 01:45:04] 2025-11-23 00:44:16,974 | INFO     | sum of deviations: 5120388088555.398
[2025-11-23 01:45:04] 2025-11-23 00:44:16,975 | INFO     | mean x: 1763812771.7957277
[2025-11-23 01:45:04] 2025-11-23 00:44:16,975 | INFO     | mean y: 2855767.4065420562
[2025-11-23 01:45:04] 2025-11-23 00:44:16,975 | INFO     | intersect: -8661585155.374947
[2025-11-23 01:45:04] 2025-11-23 00:44:16,977 | INFO     | chi2: 21.84953625422372
[2025-11-23 01:45:04] 2025-11-23 00:44:16,979 | INFO     | sum of square deviations: 1031950959575.5708
[2025-11-23 01:45:04] 2025-11-23 00:44:17,039 | INFO     | sum of deviations: 5606356886934.442
[2025-11-23 01:45:04] 2025-11-23 00:44:17,040 | INFO     | mean x: 1763812619.300067
[2025-11-23 01:45:04] 2025-11-23 00:44:17,040 | INFO     | mean y: 2862890.6329537844
[2025-11-23 01:45:04] 2025-11-23 00:44:17,040 | INFO     | intersect: -9579533378.993906
[2025-11-23 01:45:04] 2025-11-23 00:44:17,042 | INFO     | chi2: 18.902794965031564
[2025-11-23 01:45:04] 2025-11-23 00:44:17,042 | INFO     | current chi2=18.902794965031564 (change=13.4865163951593 %)
[2025-11-23 01:45:04] 2025-11-23 00:44:17,042 | INFO     | right removable region: 1492
[2025-11-23 01:45:04] 2025-11-23 00:44:17,045 | INFO     | sum of square deviations: 1031949775565.5698
[2025-11-23 01:45:04] 2025-11-23 00:44:17,108 | INFO     | sum of deviations: 4469846539866.108
[2025-11-23 01:45:04] 2025-11-23 00:44:17,108 | INFO     | mean x: 1763812924.300067
[2025-11-23 01:45:04] 2025-11-23 00:44:17,108 | INFO     | mean y: 2865303.921634293
[2025-11-23 01:45:04] 2025-11-23 00:44:17,109 | INFO     | intersect: -7637015321.405205
[2025-11-23 01:45:04] 2025-11-23 00:44:17,111 | INFO     | chi2: 16.68524947580891
[2025-11-23 01:45:04] 2025-11-23 00:44:17,111 | INFO     | current chi2=16.68524947580891 (change=23.635681409103164 %)
[2025-11-23 01:45:04] 2025-11-23 00:44:17,111 | INFO     | left removable region: 10
[2025-11-23 01:45:04] 2025-11-23 00:44:17,113 | INFO     | sum of square deviations: 1009308235936.3401
[2025-11-23 01:45:04] 2025-11-23 00:44:17,176 | INFO     | sum of deviations: 4474110113685.616
[2025-11-23 01:45:04] 2025-11-23 00:44:17,176 | INFO     | mean x: 1763812893.8097167
[2025-11-23 01:45:04] 2025-11-23 00:44:17,176 | INFO     | mean y: 2882809.3886639676
[2025-11-23 01:45:04] 2025-11-23 00:44:17,177 | INFO     | intersect: -7815831856.624311
[2025-11-23 01:45:04] 2025-11-23 00:44:17,178 | INFO     | chi2: 8.888600006275668
[2025-11-23 01:45:04] 2025-11-23 00:44:17,179 | INFO     | current memory leak: 4.43 B/s (using 1482 data points, chi2=8.89)
[2025-11-23 01:45:04] 2025-11-23 00:44:17,183 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-23 01:45:04] 2025-11-23 00:44:17,183 | INFO     | ..............................
[2025-11-23 01:45:04] 2025-11-23 00:44:17,183 | INFO     | . Timing measurements:
[2025-11-23 01:45:04] 2025-11-23 00:44:17,183 | INFO     | . get job = 0 s
[2025-11-23 01:45:04] 2025-11-23 00:44:17,183 | INFO     | . initial setup = 12 s
[2025-11-23 01:45:04] 2025-11-23 00:44:17,183 | INFO     | . payload setup = 188 s
[2025-11-23 01:45:04] 2025-11-23 00:44:17,183 | INFO     | . stage-in = 0 s
[2025-11-23 01:45:04] 2025-11-23 00:44:17,184 | INFO     | . payload execution = 91514 s
[2025-11-23 01:45:04] 2025-11-23 00:44:17,184 | INFO     | . stage-out = 99 s
[2025-11-23 01:45:04] 2025-11-23 00:44:17,184 | INFO     | . log creation = 1 s
[2025-11-23 01:45:04] 2025-11-23 00:44:17,184 | INFO     | ..............................
[2025-11-23 01:45:04] 2025-11-23 00:44:17,319 | INFO     | 
[2025-11-23 01:45:04] 2025-11-23 00:44:17,319 | INFO     | job summary report
[2025-11-23 01:45:04] 2025-11-23 00:44:17,319 | INFO     | --------------------------------------------------
[2025-11-23 01:45:04] 2025-11-23 00:44:17,319 | INFO     | PanDA job id: 6891598149
[2025-11-23 01:45:04] 2025-11-23 00:44:17,319 | INFO     | task id: 47493068
[2025-11-23 01:45:04] 2025-11-23 00:44:17,319 | INFO     | errors: (none)
[2025-11-23 01:45:04] 2025-11-23 00:44:17,319 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 01:45:04] 2025-11-23 00:44:17,320 | INFO     | pilot state: finished 
[2025-11-23 01:45:04] 2025-11-23 00:44:17,320 | INFO     | transexitcode: 0
[2025-11-23 01:45:04] 2025-11-23 00:44:17,320 | INFO     | exeerrorcode: 0
[2025-11-23 01:45:04] 2025-11-23 00:44:17,320 | INFO     | exeerrordiag: 
[2025-11-23 01:45:04] 2025-11-23 00:44:17,320 | INFO     | exitcode: 0
[2025-11-23 01:45:04] 2025-11-23 00:44:17,320 | INFO     | exitmsg: OK
[2025-11-23 01:45:04] 2025-11-23 00:44:17,320 | INFO     | cpuconsumptiontime: 340085 s
[2025-11-23 01:45:04] 2025-11-23 00:44:17,320 | INFO     | nevents: 1000
[2025-11-23 01:45:04] 2025-11-23 00:44:17,320 | INFO     | neventsw: 0
[2025-11-23 01:45:04] 2025-11-23 00:44:17,320 | INFO     | pid: 26751
[2025-11-23 01:45:04] 2025-11-23 00:44:17,321 | INFO     | pgrp: 26751
[2025-11-23 01:45:04] 2025-11-23 00:44:17,321 | INFO     | corecount: 8
[2025-11-23 01:45:04] 2025-11-23 00:44:17,321 | INFO     | event service: False
[2025-11-23 01:45:04] 2025-11-23 00:44:17,321 | INFO     | sizes: {0: 2298569, 1: 2298824, 12: 2298824, 23: 2298852, 34: 2298880, 44: 2298908, 55: 2299064, 66: 2299092, 77: 2299120, 87: 2299176, 95: 2299466, 98: 2299774, 9
[2025-11-23 01:45:04] 2025-11-23 00:44:17,321 | INFO     | --------------------------------------------------
[2025-11-23 01:45:04] 2025-11-23 00:44:17,321 | INFO     | 
[2025-11-23 01:45:04] 2025-11-23 00:44:17,321 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-11-23 01:45:04] 2025-11-23 00:44:17,443 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 01:45:04] 2025-11-23 00:44:17,444 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 01:45:04] 2025-11-23 00:44:17,444 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 01:45:04] 2025-11-23 00:44:17,444 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 01:45:04] 2025-11-23 00:44:17,444 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 01:45:04] 2025-11-23 00:44:17,444 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 01:45:04] 2025-11-23 00:44:17,444 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 01:45:04] 2025-11-23 00:44:17,444 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 01:45:04] 2025-11-23 00:44:17,444 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 01:45:04] 2025-11-23 00:44:17,445 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 01:45:04] 2025-11-23 00:44:17,445 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 01:45:04] 2025-11-23 00:44:17,445 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 01:45:04] 2025-11-23 00:44:17,445 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 01:45:04] 2025-11-23 00:44:17,445 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 01:45:04] 2025-11-23 00:44:17,445 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 01:45:04] 2025-11-23 00:44:17,445 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 01:45:04] 2025-11-23 00:44:17,445 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 01:45:04] 2025-11-23 00:44:17,445 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 01:45:04] 2025-11-23 00:44:17,445 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 01:45:04] 2025-11-23 00:44:17,445 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 01:45:04] 2025-11-23 00:44:17,446 | INFO     | job 6891598149 has completed (purged errors)
[2025-11-23 01:45:04] 2025-11-23 00:44:17,446 | INFO     | overall cleanup function is called
[2025-11-23 01:45:04] 2025-11-23 00:44:18,464 | INFO     | --- collectZombieJob: --- 10, [26751]
[2025-11-23 01:45:04] 2025-11-23 00:44:18,465 | INFO     | zombie collector waiting for pid 26751
[2025-11-23 01:45:04] 2025-11-23 00:44:18,465 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 01:45:04] 2025-11-23 00:44:18,465 | INFO     | collected zombie processes
[2025-11-23 01:45:04] 2025-11-23 00:44:18,465 | INFO     | will attempt to kill all subprocesses of pid=26751
[2025-11-23 01:45:04] 2025-11-23 00:44:18,563 | INFO     | process IDs to be killed: [26751] (in reverse order)
[2025-11-23 01:45:04] 2025-11-23 00:44:18,636 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 01:45:04] 2025-11-23 00:44:18,637 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 01:45:04] 2025-11-23 00:44:18,641 | INFO     | did not find any defunct processes belonging to 26751
[2025-11-23 01:45:04] 2025-11-23 00:44:18,644 | INFO     | did not find any defunct processes belonging to 26751
[2025-11-23 01:45:04] 2025-11-23 00:44:18,647 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 01:45:04] 2025-11-23 00:44:18,647 | INFO     | ready for new job
[2025-11-23 01:45:04] 2025-11-23 00:44:18,647 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 01:45:04] 2025-11-23 00:44:18,655 | INFO     | ***************************************
[2025-11-23 01:45:04] 2025-11-23 00:44:18,655 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 01:45:04] 2025-11-23 00:44:18,655 | INFO     | ***************************************
[2025-11-23 01:45:04] 2025-11-23 00:44:18,655 | INFO     | 
[2025-11-23 01:45:04] 2025-11-23 00:44:18,656 | INFO     | pilot is running in a VM
[2025-11-23 01:45:04] 2025-11-23 00:44:18,657 | INFO     | architecture information:
[2025-11-23 01:45:04] 2025-11-23 00:44:18,658 | INFO     | executing command: cat /etc/os-release
[2025-11-23 01:45:04] 2025-11-23 00:44:18,984 | INFO     | cat /etc/os-release:
[2025-11-23 01:45:04] NAME="CentOS Linux"
[2025-11-23 01:45:04] VERSION="7 (Core)"
[2025-11-23 01:45:04] ID="centos"
[2025-11-23 01:45:04] ID_LIKE="rhel fedora"
[2025-11-23 01:45:04] VERSION_ID="7"
[2025-11-23 01:45:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 01:45:04] ANSI_COLOR="0;31"
[2025-11-23 01:45:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 01:45:04] HOME_URL="https://www.centos.org/"
[2025-11-23 01:45:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 01:45:04] 
[2025-11-23 01:45:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 01:45:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 01:45:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 01:45:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 01:45:04] 
[2025-11-23 01:45:04] 2025-11-23 00:44:18,985 | INFO     | ***************************************
[2025-11-23 01:45:04] 2025-11-23 00:44:19,489 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-11-23 01:45:04] 2025-11-23 00:44:19,834 | INFO     | sufficient remaining disk space (495005466624 B)
[2025-11-23 01:45:04] 2025-11-23 00:44:19,835 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 01:45:04] 2025-11-23 00:44:19,835 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 01:45:04] 2025-11-23 00:44:19,835 | INFO     | update_server=False
[2025-11-23 01:45:04] 2025-11-23 00:44:19,835 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 01:45:04] 2025-11-23 00:44:19,845 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 01:45:04] 2025-11-23 00:44:19,846 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 01:45:04] 2025-11-23 00:44:19,846 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 01:45:04] 2025-11-23 00:44:19,846 | INFO     | will abort loop
[2025-11-23 01:45:04] 2025-11-23 00:44:20,291 | INFO     | all job control threads have been joined
[2025-11-23 01:45:04] 2025-11-23 00:44:20,336 | INFO     | all data control threads have been joined
[2025-11-23 01:45:04] 2025-11-23 00:44:20,842 | INFO     | [job] retrieve thread has finished
[2025-11-23 01:45:04] 2025-11-23 00:44:20,853 | INFO     | [job] job monitor thread has finished
[2025-11-23 01:45:04] 2025-11-23 00:44:20,927 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 01:45:04] 2025-11-23 00:44:20,935 | INFO     | all payload control threads have been joined
[2025-11-23 01:45:04] 2025-11-23 00:44:20,941 | INFO     | [data] copytool_in thread has finished
[2025-11-23 01:45:04] 2025-11-23 00:44:21,059 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 01:45:04] 2025-11-23 00:44:21,092 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 01:45:04] 2025-11-23 00:44:21,298 | INFO     | [job] control thread has finished
[2025-11-23 01:45:04] 2025-11-23 00:44:21,343 | INFO     | [data] control thread has finished
[2025-11-23 01:45:04] 2025-11-23 00:44:21,453 | INFO     | [payload] validate_post thread has finished
[2025-11-23 01:45:04] 2025-11-23 00:44:21,483 | INFO     | [job] validate thread has finished
[2025-11-23 01:45:04] 2025-11-23 00:44:21,546 | INFO     | [payload] failed_post thread has finished
[2025-11-23 01:45:04] 2025-11-23 00:44:21,941 | INFO     | [payload] control thread has finished
[2025-11-23 01:45:04] 2025-11-23 00:44:21,948 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 01:45:04] 2025-11-23 00:44:22,016 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 01:45:04] 2025-11-23 00:44:22,271 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 01:45:04] 2025-11-23 00:44:22,334 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 01:45:04] 2025-11-23 00:44:22,934 | INFO     | [data] copytool_out thread has finished
[2025-11-23 01:45:04] 2025-11-23 00:44:23,341 | INFO     | [job] queue monitor thread has finished
[2025-11-23 01:45:04] 2025-11-23 00:44:25,068 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 01:45:04] 2025-11-23 00:44:49,426 | INFO     | PID=20171 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 01:45:04] 2025-11-23 00:44:49,427 | INFO     | .. there are 9 such processes running
[2025-11-23 01:45:04] 2025-11-23 00:44:49,427 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 01:45:04] 2025-11-23 00:44:49,427 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 01:45:04] 2025-11-23 00:44:49,427 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 01:45:04] 2025-11-23 00:44:55,523 | INFO     | [monitor] cgroup control has ended
[2025-11-23 01:45:04] 2025-11-23 00:44:55,761 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139747474872128)>', '<ExcThread(monitor, started 139746810517248)>']
[2025-11-23 01:45:04] 2025-11-23 00:44:56,469 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 01:45:04] 2025-11-23 00:44:56,470 | INFO     | [monitor] control thread has ended
[2025-11-23 01:45:04] 2025-11-23 00:45:00,787 | INFO     | all workflow threads have been joined
[2025-11-23 01:45:04] 2025-11-23 00:45:00,788 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 01:45:04] 2025-11-23 00:45:00,788 | INFO     | traces error code: 0
[2025-11-23 01:45:04] 2025-11-23 00:45:00,788 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 01:45:04] 2025-11-23 00:45:01,091 [wrapper] ==== pilot stdout END ====
[2025-11-23 01:45:04] 2025-11-23 00:45:01,177 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 01:45:04] 2025-11-23 00:45:01,228 [wrapper] pilotpid: 20171
[2025-11-23 01:45:04] 2025-11-23 00:45:01,276 [wrapper] Pilot exit status: 0
[2025-11-23 01:45:04] 2025-11-23 00:45:01,692 [wrapper] pandaids: 6891598149
[2025-11-23 01:45:04] 2025-11-23 00:45:01,818 [wrapper] cleanup supervisor_pilot 15589 20172
[2025-11-23 01:45:04] 2025-11-23 00:45:01,874 [wrapper] Test setup, not cleaning
[2025-11-23 01:45:04] 2025-11-23 00:45:01,973 [wrapper] apfmon messages muted
[2025-11-23 01:45:04] 2025-11-23 00:45:02,078 [wrapper] ==== wrapper stdout END ====
[2025-11-23 01:45:04] 2025-11-23 00:45:02,166 [wrapper] ==== wrapper stderr END ====
[2025-11-23 01:45:04]  *** Error codes and diagnostics ***
[2025-11-23 01:45:04]     "exeErrorCode": 0,
[2025-11-23 01:45:04]     "exeErrorDiag": "",
[2025-11-23 01:45:04]     "pilotErrorCode": 0,
[2025-11-23 01:45:04]     "pilotErrorDiag": "",
[2025-11-23 01:45:04]  *** Listing of results directory ***
[2025-11-23 01:45:04] total 1335232
[2025-11-23 01:45:04] -rw-r--r--. 1 boinc boinc    576529 Nov 18 19:50 pilot3.tar.gz
[2025-11-23 01:45:04] -rw-r--r--. 1 boinc boinc      5112 Nov 18 19:58 queuedata.json
[2025-11-23 01:45:04] -rwx------. 1 boinc boinc     36292 Nov 18 20:00 runpilot2-wrapper.sh
[2025-11-23 01:45:04] -rw-r--r--. 1 boinc boinc       100 Nov 22 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 01:45:04] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 00:04 run_atlas
[2025-11-23 01:45:04] -rw-r--r--. 1 boinc boinc       105 Nov 22 00:04 job.xml
[2025-11-23 01:45:04] -rw-r--r--. 2 boinc boinc 408706871 Nov 22 00:04 EVNT.47493065._000804.pool.root.1
[2025-11-23 01:45:04] -rw-r--r--. 1 boinc boinc      6390 Nov 22 00:04 init_data.xml
[2025-11-23 01:45:04] -rw-r--r--. 2 boinc boinc     15120 Nov 22 00:04 start_atlas.sh
[2025-11-23 01:45:04] drwxrwx--x. 2 boinc boinc        68 Nov 22 00:04 shared
[2025-11-23 01:45:04] -rw-r--r--. 2 boinc boinc    590098 Nov 22 00:04 input.tar.gz
[2025-11-23 01:45:04] -rw-r--r--. 1 boinc boinc         0 Nov 22 00:04 boinc_lockfile
[2025-11-23 01:45:04] -rw-r--r--. 1 boinc boinc      2773 Nov 22 00:05 pandaJob.out
[2025-11-23 01:45:04] -rw-------. 1 boinc boinc    989798 Nov 22 00:09 agis_schedconf.cvmfs.json
[2025-11-23 01:45:04] drwx------. 5 boinc boinc      4096 Nov 22 00:09 pilot3
[2025-11-23 01:45:04] -rw-r--r--. 1 boinc boinc       533 Nov 23 01:28 boinc_task_state.xml
[2025-11-23 01:45:04] -rw-------. 1 boinc boinc 924959103 Nov 23 01:39 HITS.47493068._006689.pool.root.1
[2025-11-23 01:45:04] -rw-------. 1 boinc boinc      1030 Nov 23 01:40 memory_monitor_summary.json
[2025-11-23 01:45:04] -rw-------. 1 boinc boinc   1526164 Nov 23 01:41 agis_ddmendpoints.agis.ALL.json
[2025-11-23 01:45:04] -rw-------. 1 boinc boinc   2578704 Nov 23 01:41 log.47493068._006689.job.log.tgz.1
[2025-11-23 01:45:04] -rw-------. 1 boinc boinc        95 Nov 23 01:43 pilot_heartbeat.json
[2025-11-23 01:45:04] -rw-------. 1 boinc boinc      8634 Nov 23 01:44 heartbeat.json
[2025-11-23 01:45:04] -rw-r--r--. 1 boinc boinc      8192 Nov 23 01:44 boinc_mmap_file
[2025-11-23 01:45:04] -rw-r--r--. 1 boinc boinc        29 Nov 23 01:44 wrapper_checkpoint.txt
[2025-11-23 01:45:04] -rw-------. 1 boinc boinc      5070 Nov 23 01:45 pilotlog.txt
[2025-11-23 01:45:04] -rw-------. 1 boinc boinc  12272407 Nov 23 01:45 log.47493068._006689.job.log.1
[2025-11-23 01:45:04] -rw-------. 1 boinc boinc       353 Nov 23 01:45 output.list
[2025-11-23 01:45:04] -rw-r--r--. 1 boinc boinc       620 Nov 23 01:45 runtime_log
[2025-11-23 01:45:04] -rw-------. 1 boinc boinc  14868480 Nov 23 01:45 result.tar.gz
[2025-11-23 01:45:04] -rw-------. 1 boinc boinc       662 Nov 23 01:45 a7tMDm46ff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmVNGKDmUA7MGo.diag
[2025-11-23 01:45:04] -rw-r--r--. 1 boinc boinc      8703 Nov 23 01:45 runtime_log.err
[2025-11-23 01:45:04] -rw-r--r--. 1 boinc boinc     21493 Nov 23 01:45 stderr.txt
[2025-11-23 01:45:04] HITS file was successfully produced:
[2025-11-23 01:45:04] -rw-------. 1 boinc boinc 924959103 Nov 23 01:39 shared/HITS.pool.root.1
[2025-11-23 01:45:04]  *** Contents of shared directory: ***
[2025-11-23 01:45:04] total 1317528
[2025-11-23 01:45:04] -rw-r--r--. 2 boinc boinc 408706871 Nov 22 00:04 ATLAS.root_0
[2025-11-23 01:45:04] -rw-r--r--. 2 boinc boinc     15120 Nov 22 00:04 start_atlas.sh
[2025-11-23 01:45:04] -rw-r--r--. 2 boinc boinc    590098 Nov 22 00:04 input.tar.gz
[2025-11-23 01:45:04] -rw-------. 1 boinc boinc 924959103 Nov 23 01:39 HITS.pool.root.1
[2025-11-23 01:45:04] -rw-------. 1 boinc boinc  14868480 Nov 23 01:45 result.tar.gz
01:45:06 (16357): run_atlas exited; CPU time 340635.972054
01:45:06 (16357): called boinc_finish(0)

</stderr_txt>
]]>

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