Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:06:24 (3433388): wrapper (7.7.26015): starting
21:06:24 (3433388): wrapper: running run_atlas (--nthreads 3)
[2025-11-19 21:06:24] Arguments: --nthreads 3
[2025-11-19 21:06:24] Threads: 3
[2025-11-19 21:06:24] Checking for CVMFS
[2025-11-19 21:06:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 21:06:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 21:06:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 21:06:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 21:06:24] 2.9.2.0 3193051 594 53520 153055 2 81 7487332 36864001 0 130560 0 204075 99.979 21164 24215 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-19 21:06:24] CVMFS is ok
[2025-11-19 21:06:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 21:06:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 21:06:24] Further information can be found at the LHC@home message board.
[2025-11-19 21:06:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 21:06:24] Checking for apptainer binary...
[2025-11-19 21:06:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 21:06:24] Running /usr/bin/apptainer --version
[2025-11-19 21:06:24] apptainer version 1.4.1-1.1
[2025-11-19 21:06:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 21:06:24] atlasA221b
[2025-11-19 21:06:24] apptainer works
[2025-11-19 21:06:24] Set ATHENA_PROC_NUMBER=3
[2025-11-19 21:06:24] Set ATHENA_CORE_NUMBER=3
[2025-11-19 21:06:24] Starting ATLAS job with PandaID=6891596429
[2025-11-19 21:06:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 06:22:31]  *** The last 200 lines of the pilot log: ***
[2025-11-20 06:22:31] 2025-11-20 05:21:35,226 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 06:22:31] 2025-11-20 05:21:35,226 | INFO     | collected zombie processes
[2025-11-20 06:22:31] 2025-11-20 05:21:35,226 | INFO     | will attempt to kill all subprocesses of pid=3443637
[2025-11-20 06:22:31] 2025-11-20 05:21:35,301 | INFO     | process IDs to be killed: [3443637] (in reverse order)
[2025-11-20 06:22:31] 2025-11-20 05:21:35,330 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 06:22:31] 2025-11-20 05:21:35,331 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 06:22:31] 2025-11-20 05:21:35,333 | INFO     | did not find any defunct processes belonging to 3443637
[2025-11-20 06:22:31] 2025-11-20 05:21:35,334 | INFO     | did not find any defunct processes belonging to 3443637
[2025-11-20 06:22:31] 2025-11-20 05:21:35,335 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 06:22:31] 2025-11-20 05:21:35,335 | INFO     | ready for new job
[2025-11-20 06:22:31] 2025-11-20 05:21:35,335 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 06:22:31] 2025-11-20 05:21:35,336 | INFO     | ***************************************
[2025-11-20 06:22:31] 2025-11-20 05:21:35,336 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 06:22:31] 2025-11-20 05:21:35,336 | INFO     | ***************************************
[2025-11-20 06:22:31] 2025-11-20 05:21:35,336 | INFO     | 
[2025-11-20 06:22:31] 2025-11-20 05:21:35,337 | INFO     | architecture information:
[2025-11-20 06:22:31] 2025-11-20 05:21:35,337 | INFO     | executing command: cat /etc/os-release
[2025-11-20 06:22:31] 2025-11-20 05:21:35,346 | INFO     | cat /etc/os-release:
[2025-11-20 06:22:31] NAME="CentOS Linux"
[2025-11-20 06:22:31] VERSION="7 (Core)"
[2025-11-20 06:22:31] ID="centos"
[2025-11-20 06:22:31] ID_LIKE="rhel fedora"
[2025-11-20 06:22:31] VERSION_ID="7"
[2025-11-20 06:22:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 06:22:31] ANSI_COLOR="0;31"
[2025-11-20 06:22:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 06:22:31] HOME_URL="https://www.centos.org/"
[2025-11-20 06:22:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 06:22:31] 
[2025-11-20 06:22:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 06:22:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 06:22:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 06:22:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 06:22:31] 
[2025-11-20 06:22:31] 2025-11-20 05:21:35,346 | INFO     | ***************************************
[2025-11-20 06:22:31] 2025-11-20 05:21:35,849 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-20 06:22:31] 2025-11-20 05:21:35,864 | INFO     | sufficient remaining disk space (350582996992 B)
[2025-11-20 06:22:31] 2025-11-20 05:21:35,864 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 06:22:31] 2025-11-20 05:21:35,864 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 06:22:31] 2025-11-20 05:21:35,864 | INFO     | update_server=False
[2025-11-20 06:22:31] 2025-11-20 05:21:35,864 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 06:22:31] 2025-11-20 05:21:35,864 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 06:22:31] 2025-11-20 05:21:35,864 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 06:22:31] 2025-11-20 05:21:35,864 | INFO     | aborting loop
[2025-11-20 06:22:31] 2025-11-20 05:21:35,864 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 06:22:31] 2025-11-20 05:21:35,864 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-20 06:22:31] 2025-11-20 05:21:35,865 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 06:22:31] 2025-11-20 05:21:35,865 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 06:22:31] 2025-11-20 05:21:35,865 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 06:22:31] 2025-11-20 05:21:35,910 | INFO     | all data control threads have been joined
[2025-11-20 06:22:31] 2025-11-20 05:21:36,869 | INFO     | [job] retrieve thread has finished
[2025-11-20 06:22:31] 2025-11-20 05:21:36,869 | INFO     | [job] job monitor thread has finished
[2025-11-20 06:22:31] 2025-11-20 05:21:36,869 | INFO     | [job] queue monitor thread has finished
[2025-11-20 06:22:31] 2025-11-20 05:21:36,914 | INFO     | [data] control thread has finished
[2025-11-20 06:22:31] 2025-11-20 05:21:36,962 | INFO     | all job control threads have been joined
[2025-11-20 06:22:31] 2025-11-20 05:21:37,171 | INFO     | [payload] failed_post thread has finished
[2025-11-20 06:22:31] 2025-11-20 05:21:37,335 | INFO     | all payload control threads have been joined
[2025-11-20 06:22:31] 2025-11-20 05:21:37,550 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 06:22:31] 2025-11-20 05:21:37,664 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 06:22:31] 2025-11-20 05:21:37,679 | INFO     | [data] copytool_in thread has finished
[2025-11-20 06:22:31] 2025-11-20 05:21:37,727 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 06:22:31] 2025-11-20 05:21:37,730 | INFO     | [payload] validate_post thread has finished
[2025-11-20 06:22:31] 2025-11-20 05:21:37,870 | INFO     | [data] copytool_out thread has finished
[2025-11-20 06:22:31] 2025-11-20 05:21:37,967 | INFO     | [job] control thread has finished
[2025-11-20 06:22:31] 2025-11-20 05:21:38,029 | INFO     | [job] validate thread has finished
[2025-11-20 06:22:31] 2025-11-20 05:21:38,198 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 06:22:31] 2025-11-20 05:21:38,340 | INFO     | [payload] control thread has finished
[2025-11-20 06:22:31] 2025-11-20 05:21:39,046 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 06:22:31] 2025-11-20 05:21:43,053 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 06:22:31] 2025-11-20 05:22:23,952 | INFO     | [monitor] cgroup control has ended
[2025-11-20 06:22:31] 2025-11-20 05:22:25,848 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139679543736128)>', '<ExcThread(monitor, started 139678762129152)>']
[2025-11-20 06:22:31] 2025-11-20 05:22:26,114 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 06:22:31] 2025-11-20 05:22:26,115 | INFO     | [monitor] control thread has ended
[2025-11-20 06:22:31] 2025-11-20 05:22:30,875 | INFO     | all workflow threads have been joined
[2025-11-20 06:22:31] 2025-11-20 05:22:30,875 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 06:22:31] 2025-11-20 05:22:30,876 | INFO     | traces error code: 0
[2025-11-20 06:22:31] 2025-11-20 05:22:30,876 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 06:22:31] 2025-11-20 05:22:30,928 [wrapper] ==== pilot stdout END ====
[2025-11-20 06:22:31] 2025-11-20 05:22:30,931 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 06:22:31] 2025-11-20 05:22:30,933 [wrapper] pilotpid: 3437138
[2025-11-20 06:22:31] 2025-11-20 05:22:30,936 [wrapper] Pilot exit status: 0
[2025-11-20 06:22:31] 2025-11-20 05:22:30,943 [wrapper] pandaids: 6891596429
[2025-11-20 06:22:31] 2025-11-20 05:22:30,965 [wrapper] cleanup supervisor_pilot 3559920 3437139
[2025-11-20 06:22:31] 2025-11-20 05:22:30,968 [wrapper] Test setup, not cleaning
[2025-11-20 06:22:31] 2025-11-20 05:22:30,971 [wrapper] apfmon messages muted
[2025-11-20 06:22:31] 2025-11-20 05:22:30,973 [wrapper] ==== wrapper stdout END ====
[2025-11-20 06:22:31] 2025-11-20 05:22:30,975 [wrapper] ==== wrapper stderr END ====
[2025-11-20 06:22:31]  *** Error codes and diagnostics ***
[2025-11-20 06:22:31]     "exeErrorCode": 0,
[2025-11-20 06:22:31]     "exeErrorDiag": "",
[2025-11-20 06:22:31]     "pilotErrorCode": 0,
[2025-11-20 06:22:31]     "pilotErrorDiag": "",
[2025-11-20 06:22:31]  *** Listing of results directory ***
[2025-11-20 06:22:31] total 1318468
[2025-11-20 06:22:31] -rw-r--r-- 1 boinc boinc    598293 Nov  6 09:41 pilot3.tar.gz
[2025-11-20 06:22:31] -rw-r--r-- 1 boinc boinc      5112 Nov 18 19:48 queuedata.json
[2025-11-20 06:22:31] -rwx------ 1 boinc boinc     36292 Nov 18 19:50 runpilot2-wrapper.sh
[2025-11-20 06:22:31] -rw-r--r-- 1 boinc boinc       100 Nov 19 21:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 06:22:31] -rwxr-xr-x 1 boinc boinc      7986 Nov 19 21:06 run_atlas
[2025-11-20 06:22:31] -rw-r--r-- 1 boinc boinc       105 Nov 19 21:06 job.xml
[2025-11-20 06:22:31] -rw-r--r-- 2 boinc boinc 409672858 Nov 19 21:06 EVNT.47493065._000783.pool.root.1
[2025-11-20 06:22:31] drwxrwx--x 2 boinc boinc      4096 Nov 19 21:06 shared
[2025-11-20 06:22:31] -rw-r--r-- 2 boinc boinc    611272 Nov 19 21:06 input.tar.gz
[2025-11-20 06:22:31] -rw-r--r-- 2 boinc boinc     15120 Nov 19 21:06 start_atlas.sh
[2025-11-20 06:22:31] -rw-r--r-- 1 boinc boinc         0 Nov 19 21:06 boinc_setup_complete
[2025-11-20 06:22:31] -rw-r--r-- 1 boinc boinc      6199 Nov 19 21:06 init_data.xml
[2025-11-20 06:22:31] -rw-r--r-- 1 boinc boinc         0 Nov 19 21:06 boinc_lockfile
[2025-11-20 06:22:31] -rw-r--r-- 1 boinc boinc      2773 Nov 19 21:06 pandaJob.out
[2025-11-20 06:22:31] -rw------- 1 boinc boinc    989451 Nov 19 21:06 agis_schedconf.cvmfs.json
[2025-11-20 06:22:31] drwx------ 7 boinc boinc      4096 Nov 19 21:06 pilot3
[2025-11-20 06:22:31] -rw-r--r-- 1 boinc boinc       532 Nov 20 06:17 boinc_task_state.xml
[2025-11-20 06:22:31] -rw------- 1 boinc boinc        95 Nov 20 06:20 pilot_heartbeat.json
[2025-11-20 06:22:31] -rw------- 1 boinc boinc 924683757 Nov 20 06:21 HITS.47493068._006479.pool.root.1
[2025-11-20 06:22:31] -rw------- 1 boinc boinc      1032 Nov 20 06:21 memory_monitor_summary.json
[2025-11-20 06:22:31] -rw------- 1 boinc boinc   1525063 Nov 20 06:21 agis_ddmendpoints.agis.ALL.json
[2025-11-20 06:22:31] -rw------- 1 boinc boinc   1221659 Nov 20 06:21 log.47493068._006479.job.log.tgz.1
[2025-11-20 06:22:31] -rw------- 1 boinc boinc      8574 Nov 20 06:21 heartbeat.json
[2025-11-20 06:22:31] -rw-r--r-- 1 boinc boinc        28 Nov 20 06:22 wrapper_checkpoint.txt
[2025-11-20 06:22:31] -rw-r--r-- 1 boinc boinc      8192 Nov 20 06:22 boinc_mmap_file
[2025-11-20 06:22:31] -rw------- 1 boinc boinc      4556 Nov 20 06:22 pilotlog.txt
[2025-11-20 06:22:31] -rw------- 1 boinc boinc   4677769 Nov 20 06:22 log.47493068._006479.job.log.1
[2025-11-20 06:22:31] -rw------- 1 boinc boinc       353 Nov 20 06:22 output.list
[2025-11-20 06:22:31] -rw-r--r-- 1 boinc boinc       620 Nov 20 06:22 runtime_log
[2025-11-20 06:22:31] -rw------- 1 boinc boinc   5918720 Nov 20 06:22 result.tar.gz
[2025-11-20 06:22:31] -rw-r--r-- 1 boinc boinc      8798 Nov 20 06:22 runtime_log.err
[2025-11-20 06:22:31] -rw------- 1 boinc boinc       669 Nov 20 06:22 41mLDm7xff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4KGKDmgjZumn.diag
[2025-11-20 06:22:31] -rw-r--r-- 1 boinc boinc     10561 Nov 20 06:22 stderr.txt
[2025-11-20 06:22:31] HITS file was successfully produced:
[2025-11-20 06:22:31] -rw------- 1 boinc boinc 924683757 Nov 20 06:21 shared/HITS.pool.root.1
[2025-11-20 06:22:31]  *** Contents of shared directory: ***
[2025-11-20 06:22:31] total 1309488
[2025-11-20 06:22:31] -rw-r--r-- 2 boinc boinc 409672858 Nov 19 21:06 ATLAS.root_0
[2025-11-20 06:22:31] -rw-r--r-- 2 boinc boinc    611272 Nov 19 21:06 input.tar.gz
[2025-11-20 06:22:31] -rw-r--r-- 2 boinc boinc     15120 Nov 19 21:06 start_atlas.sh
[2025-11-20 06:22:31] -rw------- 1 boinc boinc 924683757 Nov 20 06:21 HITS.pool.root.1
[2025-11-20 06:22:31] -rw------- 1 boinc boinc   5918720 Nov 20 06:22 result.tar.gz
06:22:32 (3433388): run_atlas exited; CPU time 98629.299237
06:22:32 (3433388): called boinc_finish(0)

</stderr_txt>
]]>

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