Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-20 06:47:57 (1512921): vboxwrapper version 26210
2025-11-20 06:47:57 (1512921): BOINC client version: 8.0.4
2025-11-20 06:47:57 (1512921): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2025-11-20 06:47:57 (1512921): Successfully copied 'init_data.xml' to the shared directory.
2025-11-20 06:47:57 (1512921): Create VM. (boinc_8452ee0ca6182605, slot#0)
2025-11-20 06:47:57 (1512921): Setting Memory Size for VM. (4800MB)
2025-11-20 06:47:57 (1512921): Setting CPU Count for VM. (8)
2025-11-20 06:47:57 (1512921): Setting Chipset Options for VM.
2025-11-20 06:47:57 (1512921): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-20 06:47:57 (1512921): Setting Boot Options for VM.
2025-11-20 06:47:57 (1512921): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-20 06:47:57 (1512921): Enabling VM Network Access.
2025-11-20 06:47:57 (1512921): Disabling USB Support for VM.
2025-11-20 06:47:58 (1512921): Disabling COM Port Support for VM.
2025-11-20 06:47:58 (1512921): Disabling LPT Port Support for VM.
2025-11-20 06:47:58 (1512921): Disabling Audio Support for VM.
2025-11-20 06:47:58 (1512921): Disabling Clipboard Support for VM.
2025-11-20 06:47:58 (1512921): Disabling Drag and Drop Support for VM.
2025-11-20 06:47:58 (1512921): Adding storage controller(s) to VM.
2025-11-20 06:47:58 (1512921): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-20 06:47:58 (1512921): Adding VirtualBox Guest Additions to VM.
2025-11-20 06:47:59 (1512921): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-20 06:47:59 (1512921): forwarding host port 48591 to guest port 80
2025-11-20 06:47:59 (1512921): Enabling remote desktop for VM.
2025-11-20 06:47:59 (1512921): Required extension pack not installed, remote desktop not enabled.
2025-11-20 06:47:59 (1512921): Enabling shared directory for VM.
2025-11-20 06:47:59 (1512921): Starting VM using VBoxManage interface. (boinc_8452ee0ca6182605, slot#0)
2025-11-20 06:48:00 (1512921): Successfully started VM. (PID = '1513500')
2025-11-20 06:48:00 (1512921): Reporting VM Process ID to BOINC.
2025-11-20 06:48:00 (1512921): Guest Log: BIOS: VirtualBox 7.2.2
2025-11-20 06:48:00 (1512921): Guest Log: CPUID EDX: 0x178bfbff
2025-11-20 06:48:00 (1512921): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-20 06:48:00 (1512921): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-20 06:48:00 (1512921): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-20 06:48:00 (1512921): Detected: Web Application Enabled (http://localhost:48591)
2025-11-20 06:48:00 (1512921): Preference change detected
2025-11-20 06:48:00 (1512921): Setting CPU throttle for VM. (100%)
2025-11-20 06:48:00 (1512921): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-20 06:48:02 (1512921): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-20 06:48:02 (1512921): Guest Log: BIOS: Booting from Hard Disk...
2025-11-20 06:48:05 (1512921): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-20 06:48:05 (1512921): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-20 06:48:05 (1512921): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-20 06:48:05 (1512921): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-20 06:48:05 (1512921): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-20 06:48:05 (1512921): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-20 06:48:05 (1512921): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-20 06:48:05 (1512921): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-20 06:48:05 (1512921): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-20 06:48:05 (1512921): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-20 06:48:05 (1512921): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-20 06:48:05 (1512921): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-20 06:48:05 (1512921): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-20 06:48:05 (1512921): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-20 06:48:05 (1512921): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-20 06:48:05 (1512921): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-20 06:48:05 (1512921): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-20 06:48:05 (1512921): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-20 06:48:05 (1512921): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-20 06:48:05 (1512921): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-20 06:48:05 (1512921): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-20 06:48:05 (1512921): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-20 06:48:05 (1512921): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-20 06:48:05 (1512921): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-20 06:48:05 (1512921): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-20 06:48:05 (1512921): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-20 06:48:05 (1512921): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-20 06:48:05 (1512921): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-20 06:48:05 (1512921): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-20 06:48:05 (1512921): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-20 06:48:05 (1512921): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-20 06:48:05 (1512921): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-20 06:48:13 (1512921): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-20 06:48:13 (1512921): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-20 06:48:21 (1512921): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-20 06:48:21 (1512921): Guest Log: 00:00:00.000305 main     Log opened 2025-11-20T06:48:19.016265000Z
2025-11-20 06:48:21 (1512921): Guest Log: 00:00:00.000484 main     OS Product: Linux
2025-11-20 06:48:21 (1512921): Guest Log: 00:00:00.000550 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-20 06:48:21 (1512921): Guest Log: 00:00:00.000640 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-20 06:48:21 (1512921): Guest Log: 00:00:00.000710 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-20 06:48:21 (1512921): Guest Log: 00:00:00.000712 main     Process ID: 1372
2025-11-20 06:48:21 (1512921): Guest Log: 00:00:00.000713 main     Package type: LINUX_64BITS_GENERIC
2025-11-20 06:48:21 (1512921): Guest Log: 00:00:00.002422 main     5.2.32 r132073 started. Verbose level = 0
2025-11-20 06:48:21 (1512921): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-20 06:48:21 (1512921): Guest Log: [INFO] Mounting shared directory
2025-11-20 06:48:21 (1512921): Guest Log: [INFO] Checking for init_data.xml
2025-11-20 06:50:17 (1512921): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-20 06:50:17 (1512921): Guest Log: [INFO] Detected branch: prod
2025-11-20 06:50:18 (1512921): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-20 06:50:18 (1512921): Guest Log: Copying input files
2025-11-20 06:50:21 (1512921): Guest Log: Copied input files into RunAtlas.
2025-11-20 06:50:21 (1512921): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-20 06:50:21 (1512921): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-20 06:50:21 (1512921): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-20 06:50:21 (1512921): Guest Log: Further information can be found at the LHC@home message board.
2025-11-20 06:53:14 (1512921): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-20 06:53:14 (1512921): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-20 06:53:14 (1512921): Guest Log: 2.6.3.0 1689 4 32164 153069 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-20 06:53:15 (1512921): Guest Log: copied the webapp to /var/www
2025-11-20 06:53:15 (1512921): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-20 06:53:15 (1512921): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-20 06:53:15 (1512921): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-20 06:53:15 (1512921): Guest Log:  *** Starting ATLAS job. (PandaID=6891582182 taskID=47493068) ***
2025-11-20 08:27:01 (1512921): Status Report: Elapsed Time: '6000.000000'
2025-11-20 08:27:01 (1512921): Status Report: CPU Time: '34778.750000'
2025-11-20 10:06:01 (1512921): Status Report: Elapsed Time: '12000.000000'
2025-11-20 10:06:01 (1512921): Status Report: CPU Time: '81765.310000'
2025-11-20 11:45:02 (1512921): Status Report: Elapsed Time: '18000.000000'
2025-11-20 11:45:02 (1512921): Status Report: CPU Time: '128834.800000'
2025-11-20 13:24:02 (1512921): Status Report: Elapsed Time: '24000.000000'
2025-11-20 13:24:02 (1512921): Status Report: CPU Time: '175904.950000'
2025-11-20 15:03:03 (1512921): Status Report: Elapsed Time: '30000.000000'
2025-11-20 15:03:03 (1512921): Status Report: CPU Time: '222894.280000'
2025-11-20 16:42:04 (1512921): Status Report: Elapsed Time: '36000.000000'
2025-11-20 16:42:04 (1512921): Status Report: CPU Time: '269990.370000'
2025-11-20 18:16:24 (1512921): Guest Log:  *** Job finished ***
2025-11-20 18:16:24 (1512921): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-20 18:16:24 (1512921): Guest Log: 2025-11-20 18:15:54,789 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-20 18:16:24 (1512921): Guest Log: 2025-11-20 18:15:54,790 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-20 18:16:24 (1512921): Guest Log: 2025-11-20 18:16:15,012 | INFO     | [monitor] cgroup control has ended
2025-11-20 18:16:24 (1512921): Guest Log: 2025-11-20 18:16:15,733 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140481881450304)>', '<ExcThread(monitor, started 140480989882112)>']
2025-11-20 18:16:24 (1512921): Guest Log: 2025-11-20 18:16:15,879 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-20 18:16:24 (1512921): Guest Log: 2025-11-20 18:16:15,879 | INFO     | [monitor] control thread has ended
2025-11-20 18:16:24 (1512921): Guest Log: 2025-11-20 18:16:20,739 | INFO     | all workflow threads have been joined
2025-11-20 18:16:24 (1512921): Guest Log: 2025-11-20 18:16:20,739 | INFO     | end of generic workflow (traces error code: 0)
2025-11-20 18:16:24 (1512921): Guest Log: 2025-11-20 18:16:20,740 | INFO     | traces error code: 0
2025-11-20 18:16:24 (1512921): Guest Log: 2025-11-20 18:16:20,741 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-20 18:16:24 (1512921): Guest Log: 2025-11-20 18:16:20,889 [wrapper] ==== pilot stdout END ====
2025-11-20 18:16:24 (1512921): Guest Log: 2025-11-20 18:16:20,898 [wrapper] ==== wrapper stdout RESUME ====
2025-11-20 18:16:24 (1512921): Guest Log: 2025-11-20 18:16:20,906 [wrapper] pilotpid: 6235
2025-11-20 18:16:24 (1512921): Guest Log: 2025-11-20 18:16:20,915 [wrapper] Pilot exit status: 0
2025-11-20 18:16:24 (1512921): Guest Log: 2025-11-20 18:16:20,950 [wrapper] pandaids: 6891582182
2025-11-20 18:16:24 (1512921): Guest Log: 2025-11-20 18:16:21,031 [wrapper] cleanup supervisor_pilot 21503 6236
2025-11-20 18:16:24 (1512921): Guest Log: 2025-11-20 18:16:21,046 [wrapper] Test setup, not cleaning
2025-11-20 18:16:24 (1512921): Guest Log: 2025-11-20 18:16:21,057 [wrapper] apfmon messages muted
2025-11-20 18:16:24 (1512921): Guest Log: 2025-11-20 18:16:21,069 [wrapper] ==== wrapper stdout END ====
2025-11-20 18:16:24 (1512921): Guest Log: 2025-11-20 18:16:21,081 [wrapper] ==== wrapper stderr END ====
2025-11-20 18:16:24 (1512921): Guest Log:  *** Error codes and diagnostics ***
2025-11-20 18:16:24 (1512921): Guest Log:     "exeErrorCode": 0,
2025-11-20 18:16:24 (1512921): Guest Log:     "exeErrorDiag": "",
2025-11-20 18:16:24 (1512921): Guest Log:     "pilotErrorCode": 0,
2025-11-20 18:16:24 (1512921): Guest Log:     "pilotErrorDiag": "",
2025-11-20 18:16:24 (1512921): Guest Log:  *** Listing of results directory ***
2025-11-20 18:16:24 (1512921): Guest Log: total 903840
2025-11-20 18:16:24 (1512921): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 18 16:45 pilot3.tar.gz
2025-11-20 18:16:24 (1512921): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 18 17:02 queuedata.json
2025-11-20 18:16:24 (1512921): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 18 17:02 runpilot2-wrapper.sh
2025-11-20 18:16:24 (1512921): Guest Log: -rw-r--r--. 1 atlas atlas    590102 Nov 20 06:50 input.tar.gz
2025-11-20 18:16:24 (1512921): Guest Log: -rw-r--r--. 1 atlas atlas      6555 Nov 20 06:50 init_data.xml
2025-11-20 18:16:24 (1512921): Guest Log: -rw-r--r--. 1 atlas atlas     15120 Nov 20 06:50 start_atlas.sh
2025-11-20 18:16:24 (1512921): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 20 06:50 EVNT.47493065._000421.pool.root.1 -> /data/./ATLAS.root_0
2025-11-20 18:16:24 (1512921): Guest Log: -rw-r--r--. 1 atlas atlas      2773 Nov 20 06:53 pandaJob.out
2025-11-20 18:16:24 (1512921): Guest Log: -rw-------. 1 atlas atlas    989427 Nov 20 06:58 agis_schedconf.cvmfs.json
2025-11-20 18:16:24 (1512921): Guest Log: drwx------. 5 atlas atlas      4096 Nov 20 06:58 pilot3
2025-11-20 18:16:24 (1512921): Guest Log: -rw-------. 1 atlas atlas 907871259 Nov 20 18:10 HITS.47493068._004204.pool.root.1
2025-11-20 18:16:24 (1512921): Guest Log: -rw-------. 1 atlas atlas      1051 Nov 20 18:11 memory_monitor_summary.json
2025-11-20 18:16:24 (1512921): Guest Log: -rw-------. 1 atlas atlas   1526164 Nov 20 18:11 agis_ddmendpoints.agis.ALL.json
2025-11-20 18:16:24 (1512921): Guest Log: -rw-------. 1 atlas atlas   1918375 Nov 20 18:11 log.47493068._004204.job.log.tgz.1
2025-11-20 18:16:24 (1512921): Guest Log: -rw-------. 1 atlas atlas        95 Nov 20 18:15 pilot_heartbeat.json
2025-11-20 18:16:24 (1512921): Guest Log: -rw-------. 1 atlas atlas      8702 Nov 20 18:15 heartbeat.json
2025-11-20 18:16:24 (1512921): Guest Log: -rw-------. 1 atlas atlas      4805 Nov 20 18:16 pilotlog.txt
2025-11-20 18:16:24 (1512921): Guest Log: -rw-------. 1 atlas atlas   4987997 Nov 20 18:16 log.47493068._004204.job.log.1
2025-11-20 18:16:24 (1512921): Guest Log: -rw-------. 1 atlas atlas       353 Nov 20 18:16 output.list
2025-11-20 18:16:24 (1512921): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 20 18:16 runtime_log
2025-11-20 18:16:24 (1512921): Guest Log: -rw-------. 1 atlas atlas   6922240 Nov 20 18:16 result.tar.gz
2025-11-20 18:16:24 (1512921): Guest Log: -rw-------. 1 atlas atlas       670 Nov 20 18:16 Wf2LDm7Gef8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmTWFKDmCUL4Wn.diag
2025-11-20 18:16:24 (1512921): Guest Log: -rw-r--r--. 1 atlas atlas      8664 Nov 20 18:16 runtime_log.err
2025-11-20 18:16:24 (1512921): Guest Log: Looking for outputfile HITS.47493068._004204.pool.root.1
2025-11-20 18:16:24 (1512921): Guest Log: HITS file was successfully produced
2025-11-20 18:16:24 (1512921): Guest Log: -rw-------. 1 atlas atlas 907871259 Nov 20 18:10 /home/atlas/RunAtlas/HITS.47493068._004204.pool.root.1
2025-11-20 18:16:24 (1512921): Guest Log: Successfully finished the ATLAS job!
2025-11-20 18:16:24 (1512921): Guest Log: Copying the results back to the shared directory!
2025-11-20 18:16:25 (1512921): Guest Log:  *** Contents of shared directory: ***
2025-11-20 18:16:25 (1512921): Guest Log: total 405504
2025-11-20 18:16:25 (1512921): Guest Log: -rw-r--r--. 1 root root 407688999 Nov 20 06:47 ATLAS.root_0
2025-11-20 18:16:25 (1512921): Guest Log: -rw-r--r--. 1 root root      6555 Nov 20 06:47 init_data.xml
2025-11-20 18:16:25 (1512921): Guest Log: -rw-r--r--. 1 root root    590102 Nov 20 06:47 input.tar.gz
2025-11-20 18:16:25 (1512921): Guest Log: -rw-r--r--. 1 root root   6922240 Nov 20 18:16 result.tar.gz
2025-11-20 18:16:25 (1512921): Guest Log: -rw-r--r--. 1 root root     15120 Nov 20 06:47 start_atlas.sh
2025-11-20 18:16:25 (1512921): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-20 18:16:25 (1512921): VM Completion File Detected.
2025-11-20 18:16:25 (1512921): Powering off VM.
2025-11-20 18:16:25 (1512921): Successfully stopped VM.
2025-11-20 18:16:25 (1512921): Deregistering VM. (boinc_8452ee0ca6182605, slot#0)
2025-11-20 18:16:26 (1512921): Removing network bandwidth throttle group from VM.
2025-11-20 18:16:26 (1512921): Removing VM from VirtualBox.
2025-11-20 18:16:31 (1512921): called boinc_finish(0)

</stderr_txt>
]]>

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