Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:30:25 (530141): wrapper (7.7.26015): starting
21:30:25 (530141): wrapper: running run_atlas (--nthreads 3)
[2025-11-18 21:30:25] Arguments: --nthreads 3
[2025-11-18 21:30:25] Threads: 3
[2025-11-18 21:30:25] Checking for CVMFS
[2025-11-18 21:30:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-18 21:30:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-18 21:30:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-18 21:30:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-18 21:30:26] 2.9.2.0 4099368 131 61160 153013 0 88 34151807 36864000 0 130560 0 1879063 99.927 136122 7533 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-18 21:30:26] CVMFS is ok
[2025-11-18 21:30:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-18 21:30:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-18 21:30:26] Further information can be found at the LHC@home message board.
[2025-11-18 21:30:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-18 21:30:26] Checking for apptainer binary...
[2025-11-18 21:30:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-18 21:30:26] Running /usr/bin/apptainer --version
[2025-11-18 21:30:26] apptainer version 1.4.1-1.1
[2025-11-18 21:30:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-18 21:30:26] thA335
[2025-11-18 21:30:26] apptainer works
[2025-11-18 21:30:26] Set ATHENA_PROC_NUMBER=3
[2025-11-18 21:30:26] Set ATHENA_CORE_NUMBER=3
[2025-11-18 21:30:26] Starting ATLAS job with PandaID=6891579504
[2025-11-18 21:30:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-18 21:34:44]  *** The last 200 lines of the pilot log: ***
[2025-11-18 21:34:44] 2025-11-18 20:33:55,406 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-18 21:34:44] 2025-11-18 20:33:55,406 | INFO     | current server update state: UPDATING_FINAL
[2025-11-18 21:34:44] 2025-11-18 20:33:55,406 | INFO     | update_server=False
[2025-11-18 21:34:44] 2025-11-18 20:33:55,406 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-18 21:34:44] 2025-11-18 20:33:55,406 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-18 21:34:44] 2025-11-18 20:33:55,407 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-18 21:34:44] 2025-11-18 20:33:55,407 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-18 21:34:44] 2025-11-18 20:33:55,448 | INFO     | all job control threads have been joined
[2025-11-18 21:34:44] 2025-11-18 20:33:56,158 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-18 21:34:44] 2025-11-18 20:33:56,158 | INFO     | aborting loop
[2025-11-18 21:34:44] 2025-11-18 20:33:56,159 | INFO     | all data control threads have been joined
[2025-11-18 21:34:44] 2025-11-18 20:33:56,203 | INFO     | all payload control threads have been joined
[2025-11-18 21:34:44] 2025-11-18 20:33:56,412 | INFO     | [job] retrieve thread has finished
[2025-11-18 21:34:44] 2025-11-18 20:33:56,413 | INFO     | [job] queue monitor thread has finished
[2025-11-18 21:34:44] 2025-11-18 20:33:56,454 | INFO     | [job] control thread has finished
[2025-11-18 21:34:44] 2025-11-18 20:33:56,493 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-18 21:34:44] 2025-11-18 20:33:56,750 | INFO     | [payload] execute_payloads thread has finished
[2025-11-18 21:34:44] 2025-11-18 20:33:56,961 | INFO     | [payload] validate_post thread has finished
[2025-11-18 21:34:44] 2025-11-18 20:33:57,136 | INFO     | [job] validate thread has finished
[2025-11-18 21:34:44] 2025-11-18 20:33:57,164 | INFO     | [job] job monitor thread has finished
[2025-11-18 21:34:44] 2025-11-18 20:33:57,165 | INFO     | [data] control thread has finished
[2025-11-18 21:34:44] 2025-11-18 20:33:57,210 | INFO     | [payload] control thread has finished
[2025-11-18 21:34:44] 2025-11-18 20:33:57,223 | INFO     | [job] create_data_payload thread has finished
[2025-11-18 21:34:44] 2025-11-18 20:33:57,292 | INFO     | [payload] validate_pre thread has finished
[2025-11-18 21:34:44] 2025-11-18 20:33:57,413 | INFO     | [data] copytool_out thread has finished
[2025-11-18 21:34:44] 2025-11-18 20:33:57,466 | INFO     | [data] copytool_in thread has finished
[2025-11-18 21:34:44] 2025-11-18 20:33:57,546 | INFO     | [payload] failed_post thread has finished
[2025-11-18 21:34:44] 2025-11-18 20:33:59,413 | INFO     | [data] queue_monitor thread has finished
[2025-11-18 21:34:44] 2025-11-18 20:34:26,371 | INFO     | PID=533860 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-18 21:34:44] 2025-11-18 20:34:26,371 | INFO     | found 0 job(s) in 20 queues
[2025-11-18 21:34:44] 2025-11-18 20:34:26,371 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-18 21:34:44] 2025-11-18 20:34:26,371 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-18 21:34:44] 2025-11-18 20:34:37,338 | INFO     | [monitor] cgroup control has ended
[2025-11-18 21:34:44] 2025-11-18 20:34:38,981 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139801558906688)>', '<ExcThread(monitor, started 139801202235136)>']
[2025-11-18 21:34:44] 2025-11-18 20:34:39,439 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-18 21:34:44] 2025-11-18 20:34:39,439 | INFO     | [monitor] control thread has ended
[2025-11-18 21:34:44] 2025-11-18 20:34:44,007 | INFO     | all workflow threads have been joined
[2025-11-18 21:34:44] 2025-11-18 20:34:44,008 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-18 21:34:44] 2025-11-18 20:34:44,008 | INFO     | traces error code: 0
[2025-11-18 21:34:44] 2025-11-18 20:34:44,009 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-18 21:34:44] 2025-11-18 20:34:44,089 [wrapper] ==== pilot stdout END ====
[2025-11-18 21:34:44] 2025-11-18 20:34:44,092 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-18 21:34:44] 2025-11-18 20:34:44,095 [wrapper] pilotpid: 533860
[2025-11-18 21:34:44] 2025-11-18 20:34:44,097 [wrapper] Pilot exit status: 0
[2025-11-18 21:34:44] 2025-11-18 20:34:44,104 [wrapper] pandaids: 6891579504
[2025-11-18 21:34:44] 2025-11-18 20:34:44,121 [wrapper] cleanup supervisor_pilot  533866 533861
[2025-11-18 21:34:44] 2025-11-18 20:34:44,124 [wrapper] Test setup, not cleaning
[2025-11-18 21:34:44] 2025-11-18 20:34:44,126 [wrapper] apfmon messages muted
[2025-11-18 21:34:44] 2025-11-18 20:34:44,128 [wrapper] ==== wrapper stdout END ====
[2025-11-18 21:34:44] 2025-11-18 20:34:44,130 [wrapper] ==== wrapper stderr END ====
[2025-11-18 21:34:44]  *** Error codes and diagnostics ***
[2025-11-18 21:34:44]     "exeErrorCode": 65,
[2025-11-18 21:34:44]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-18 21:34:44]     "pilotErrorCode": 1305,
[2025-11-18 21:34:44]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-18 21:34:44]  *** Listing of results directory ***
[2025-11-18 21:34:44] total 404476
[2025-11-18 21:34:44] -rw-r--r-- 1 boinc boinc    576529 Nov 18 17:45 pilot3.tar.gz
[2025-11-18 21:34:44] -rw-r--r-- 1 boinc boinc      5112 Nov 18 17:52 queuedata.json
[2025-11-18 21:34:44] -rwx------ 1 boinc boinc     36292 Nov 18 17:53 runpilot2-wrapper.sh
[2025-11-18 21:34:44] -rw-r--r-- 1 boinc boinc       100 Nov 18 21:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-18 21:34:44] -rwxr-xr-x 1 boinc boinc      7986 Nov 18 21:30 run_atlas
[2025-11-18 21:34:44] -rw-r--r-- 1 boinc boinc       105 Nov 18 21:30 job.xml
[2025-11-18 21:34:44] -rw-r--r-- 2 boinc boinc 409977814 Nov 18 21:30 EVNT.47493065._000398.pool.root.1
[2025-11-18 21:34:44] -rw-r--r-- 2 boinc boinc    590100 Nov 18 21:30 input.tar.gz
[2025-11-18 21:34:44] -rw-r--r-- 2 boinc boinc     15120 Nov 18 21:30 start_atlas.sh
[2025-11-18 21:34:44] drwxrwx--x 2 boinc boinc      4096 Nov 18 21:30 shared
[2025-11-18 21:34:44] -rw-r--r-- 1 boinc boinc         0 Nov 18 21:30 boinc_setup_complete
[2025-11-18 21:34:44] -rw-r--r-- 1 boinc boinc      6193 Nov 18 21:30 init_data.xml
[2025-11-18 21:34:44] -rw-r--r-- 1 boinc boinc         0 Nov 18 21:30 boinc_lockfile
[2025-11-18 21:34:44] -rw-r--r-- 1 boinc boinc      2773 Nov 18 21:30 pandaJob.out
[2025-11-18 21:34:44] -rw------- 1 boinc boinc    992790 Nov 18 21:30 agis_schedconf.cvmfs.json
[2025-11-18 21:34:44] -rw------- 1 boinc boinc   1525063 Nov 18 21:30 agis_ddmendpoints.agis.ALL.json
[2025-11-18 21:34:44] drwx------ 5 boinc boinc      4096 Nov 18 21:30 pilot3
[2025-11-18 21:34:44] -rw-r--r-- 1 boinc boinc       523 Nov 18 21:31 boinc_task_state.xml
[2025-11-18 21:34:44] -rw------- 1 boinc boinc       955 Nov 18 21:31 memory_monitor_summary.json
[2025-11-18 21:34:44] -rw------- 1 boinc boinc     56200 Nov 18 21:31 log.47493068._003976.job.log.tgz.1
[2025-11-18 21:34:44] -rw------- 1 boinc boinc        95 Nov 18 21:33 pilot_heartbeat.json
[2025-11-18 21:34:44] -rw------- 1 boinc boinc      8412 Nov 18 21:33 heartbeat.json
[2025-11-18 21:34:44] -rw-r--r-- 1 boinc boinc      8192 Nov 18 21:34 boinc_mmap_file
[2025-11-18 21:34:44] -rw-r--r-- 1 boinc boinc        23 Nov 18 21:34 wrapper_checkpoint.txt
[2025-11-18 21:34:44] -rw------- 1 boinc boinc      4751 Nov 18 21:34 pilotlog.txt
[2025-11-18 21:34:44] -rw------- 1 boinc boinc     93611 Nov 18 21:34 log.47493068._003976.job.log.1
[2025-11-18 21:34:44] -rw------- 1 boinc boinc       186 Nov 18 21:34 output.list
[2025-11-18 21:34:44] -rw-r--r-- 1 boinc boinc       620 Nov 18 21:34 runtime_log
[2025-11-18 21:34:44] -rw------- 1 boinc boinc    174080 Nov 18 21:34 result.tar.gz
[2025-11-18 21:34:44] -rw-r--r-- 1 boinc boinc      8624 Nov 18 21:34 runtime_log.err
[2025-11-18 21:34:44] -rw------- 1 boinc boinc       649 Nov 18 21:34 DXhNDm97df8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmVvFKDm1N9GXo.diag
[2025-11-18 21:34:44] -rw-r--r-- 1 boinc boinc      8015 Nov 18 21:34 stderr.txt
[2025-11-18 21:34:44] No HITS result produced
[2025-11-18 21:34:44]  *** Contents of shared directory: ***
[2025-11-18 21:34:44] total 401140
[2025-11-18 21:34:44] -rw-r--r-- 2 boinc boinc 409977814 Nov 18 21:30 ATLAS.root_0
[2025-11-18 21:34:44] -rw-r--r-- 2 boinc boinc    590100 Nov 18 21:30 input.tar.gz
[2025-11-18 21:34:44] -rw-r--r-- 2 boinc boinc     15120 Nov 18 21:30 start_atlas.sh
[2025-11-18 21:34:44] -rw------- 1 boinc boinc    174080 Nov 18 21:34 result.tar.gz
21:34:45 (530141): run_atlas exited; CPU time 31.832727
21:34:45 (530141): called boinc_finish(0)

</stderr_txt>
]]>

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