Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:38:09 (24331): wrapper (7.7.26015): starting
22:38:09 (24331): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 22:38:09] Arguments: --nthreads 8
[2025-11-19 22:38:09] Threads: 8
[2025-11-19 22:38:09] Checking for CVMFS
[2025-11-19 22:38:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 22:38:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 22:38:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 22:38:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 22:38:13] 2.11.2.0 7869 275690 140716 153057 3 227 16221954 25165825 4585 130560 2 134258543 99.884 72544681 2861 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 22:38:13] CVMFS is ok
[2025-11-19 22:38:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 22:38:13] Checking for apptainer binary...
[2025-11-19 22:38:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 22:38:13] Running /usr/bin/apptainer --version
[2025-11-19 22:38:13] apptainer version 1.3.2-1.el7
[2025-11-19 22:38:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 22:38:22] cg-vwn276.simple-grid.lan
[2025-11-19 22:38:22] apptainer works
[2025-11-19 22:38:22] Set ATHENA_PROC_NUMBER=8
[2025-11-19 22:38:22] Set ATHENA_CORE_NUMBER=8
[2025-11-19 22:38:22] Starting ATLAS job with PandaID=6891581182
[2025-11-19 22:38:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 23:47:09]  *** The last 200 lines of the pilot log: ***
[2025-11-20 23:47:09] 2025-11-20 22:45:45,618 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:47:09] 2025-11-20 22:45:47,073 | INFO     | time since job start (90206s) is within the limit (172800.0s)
[2025-11-20 23:47:09] 2025-11-20 22:45:48,122 | INFO     | monitor loop #6066: job 0:6891581182 is in state 'finished'
[2025-11-20 23:47:09] 2025-11-20 22:45:48,122 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:47:09] 2025-11-20 22:45:49,081 | INFO     | time since job start (90208s) is within the limit (172800.0s)
[2025-11-20 23:47:09] 2025-11-20 22:45:50,627 | INFO     | monitor loop #6067: job 0:6891581182 is in state 'finished'
[2025-11-20 23:47:09] 2025-11-20 22:45:50,627 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:47:09] 2025-11-20 22:45:51,093 | INFO     | time since job start (90210s) is within the limit (172800.0s)
[2025-11-20 23:47:09] 2025-11-20 22:45:52,245 | INFO     | PID=28121 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 23:47:09] 2025-11-20 22:45:52,246 | INFO     | .. there are 9 such processes running
[2025-11-20 23:47:09] 2025-11-20 22:45:53,132 | INFO     | monitor loop #6068: job 0:6891581182 is in state 'finished'
[2025-11-20 23:47:09] 2025-11-20 22:45:53,132 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:47:09] 2025-11-20 22:45:53,247 | INFO     | time since job start (90212s) is within the limit (172800.0s)
[2025-11-20 23:47:09] 2025-11-20 22:45:55,254 | INFO     | time since job start (90214s) is within the limit (172800.0s)
[2025-11-20 23:47:09] 2025-11-20 22:45:55,587 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 23:47:09] 2025-11-20 22:45:55,588 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-20 23:47:09] 2025-11-20 22:45:55,590 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6891581182/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 23:47:09] 2025-11-20 22:45:55,591 | INFO     | extracted standard info from prmon json
[2025-11-20 23:47:09] 2025-11-20 22:45:55,591 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 23:47:09] 2025-11-20 22:45:55,591 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 23:47:09] 2025-11-20 22:45:55,636 | INFO     | fitting pss+swap vs Time
[2025-11-20 23:47:09] 2025-11-20 22:45:55,639 | INFO     | sum of square deviations: 982975963990.6257
[2025-11-20 23:47:09] 2025-11-20 22:45:55,657 | INFO     | monitor loop #6069: job 0:6891581182 is in state 'finished'
[2025-11-20 23:47:09] 2025-11-20 22:45:55,657 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:47:09] 2025-11-20 22:45:55,780 | INFO     | sum of deviations: 3335017562870.9307
[2025-11-20 23:47:09] 2025-11-20 22:45:55,781 | INFO     | mean x: 1763633871.117767
[2025-11-20 23:47:09] 2025-11-20 22:45:55,781 | INFO     | mean y: 2826357.7113682777
[2025-11-20 23:47:09] 2025-11-20 22:45:55,781 | INFO     | intersect: -5980788857.836153
[2025-11-20 23:47:09] 2025-11-20 22:45:55,783 | INFO     | chi2: 27.48269819394102
[2025-11-20 23:47:09] 2025-11-20 22:45:55,785 | INFO     | sum of square deviations: 972973374914.3575
[2025-11-20 23:47:09] 2025-11-20 22:45:55,846 | INFO     | sum of deviations: 3813910617020.3164
[2025-11-20 23:47:09] 2025-11-20 22:45:55,846 | INFO     | mean x: 1763633718.6215847
[2025-11-20 23:47:09] 2025-11-20 22:45:55,846 | INFO     | mean y: 2833657.363387978
[2025-11-20 23:47:09] 2025-11-20 22:45:55,846 | INFO     | intersect: -6910347666.409161
[2025-11-20 23:47:09] 2025-11-20 22:45:55,848 | INFO     | chi2: 24.272787186071344
[2025-11-20 23:47:09] 2025-11-20 22:45:55,848 | INFO     | current chi2=24.272787186071344 (change=11.67975205788691 %)
[2025-11-20 23:47:09] 2025-11-20 22:45:55,848 | INFO     | right removable region: 1463
[2025-11-20 23:47:09] 2025-11-20 22:45:55,851 | INFO     | sum of square deviations: 972972373294.3578
[2025-11-20 23:47:09] 2025-11-20 22:45:55,908 | INFO     | sum of deviations: 2715694080699.349
[2025-11-20 23:47:09] 2025-11-20 22:45:55,908 | INFO     | mean x: 1763634023.6215847
[2025-11-20 23:47:09] 2025-11-20 22:45:55,908 | INFO     | mean y: 2835798.818306011
[2025-11-20 23:47:09] 2025-11-20 22:45:55,908 | INFO     | intersect: -4919699115.767729
[2025-11-20 23:47:09] 2025-11-20 22:45:55,910 | INFO     | chi2: 22.69345491983919
[2025-11-20 23:47:09] 2025-11-20 22:45:55,910 | INFO     | current chi2=22.69345491983919 (change=17.42639401817428 %)
[2025-11-20 23:47:09] 2025-11-20 22:45:55,910 | INFO     | left removable region: 10
[2025-11-20 23:47:09] 2025-11-20 22:45:55,912 | INFO     | sum of square deviations: 951205040194.4159
[2025-11-20 23:47:09] 2025-11-20 22:45:55,969 | INFO     | sum of deviations: 2757199427400.5723
[2025-11-20 23:47:09] 2025-11-20 22:45:55,969 | INFO     | mean x: 1763633993.1300757
[2025-11-20 23:47:09] 2025-11-20 22:45:55,969 | INFO     | mean y: 2852935.6689607706
[2025-11-20 23:47:09] 2025-11-20 22:45:55,970 | INFO     | intersect: -5109284227.742778
[2025-11-20 23:47:09] 2025-11-20 22:45:55,971 | INFO     | chi2: 15.307597705239893
[2025-11-20 23:47:09] 2025-11-20 22:45:55,972 | INFO     | current memory leak: 2.90 B/s (using 1453 data points, chi2=15.31)
[2025-11-20 23:47:09] 2025-11-20 22:45:55,974 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-20 23:47:09] 2025-11-20 22:45:55,975 | INFO     | ..............................
[2025-11-20 23:47:09] 2025-11-20 22:45:55,975 | INFO     | . Timing measurements:
[2025-11-20 23:47:09] 2025-11-20 22:45:55,975 | INFO     | . get job = 0 s
[2025-11-20 23:47:09] 2025-11-20 22:45:55,975 | INFO     | . initial setup = 7 s
[2025-11-20 23:47:09] 2025-11-20 22:45:55,975 | INFO     | . payload setup = 183 s
[2025-11-20 23:47:09] 2025-11-20 22:45:55,975 | INFO     | . stage-in = 0 s
[2025-11-20 23:47:09] 2025-11-20 22:45:55,975 | INFO     | . payload execution = 89712 s
[2025-11-20 23:47:09] 2025-11-20 22:45:55,975 | INFO     | . stage-out = 6 s
[2025-11-20 23:47:09] 2025-11-20 22:45:55,975 | INFO     | . log creation = 1 s
[2025-11-20 23:47:09] 2025-11-20 22:45:55,975 | INFO     | ..............................
[2025-11-20 23:47:09] 2025-11-20 22:45:56,119 | INFO     | 
[2025-11-20 23:47:09] 2025-11-20 22:45:56,119 | INFO     | job summary report
[2025-11-20 23:47:09] 2025-11-20 22:45:56,119 | INFO     | --------------------------------------------------
[2025-11-20 23:47:09] 2025-11-20 22:45:56,119 | INFO     | PanDA job id: 6891581182
[2025-11-20 23:47:09] 2025-11-20 22:45:56,119 | INFO     | task id: 47493068
[2025-11-20 23:47:09] 2025-11-20 22:45:56,119 | INFO     | errors: (none)
[2025-11-20 23:47:09] 2025-11-20 22:45:56,119 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 23:47:09] 2025-11-20 22:45:56,119 | INFO     | pilot state: finished 
[2025-11-20 23:47:09] 2025-11-20 22:45:56,120 | INFO     | transexitcode: 0
[2025-11-20 23:47:09] 2025-11-20 22:45:56,120 | INFO     | exeerrorcode: 0
[2025-11-20 23:47:09] 2025-11-20 22:45:56,120 | INFO     | exeerrordiag: 
[2025-11-20 23:47:09] 2025-11-20 22:45:56,120 | INFO     | exitcode: 0
[2025-11-20 23:47:09] 2025-11-20 22:45:56,120 | INFO     | exitmsg: OK
[2025-11-20 23:47:09] 2025-11-20 22:45:56,120 | INFO     | cpuconsumptiontime: 331065 s
[2025-11-20 23:47:09] 2025-11-20 22:45:56,120 | INFO     | nevents: 1000
[2025-11-20 23:47:09] 2025-11-20 22:45:56,120 | INFO     | neventsw: 0
[2025-11-20 23:47:09] 2025-11-20 22:45:56,120 | INFO     | pid: 2245
[2025-11-20 23:47:09] 2025-11-20 22:45:56,121 | INFO     | pgrp: 2245
[2025-11-20 23:47:09] 2025-11-20 22:45:56,121 | INFO     | corecount: 8
[2025-11-20 23:47:09] 2025-11-20 22:45:56,121 | INFO     | event service: False
[2025-11-20 23:47:09] 2025-11-20 22:45:56,121 | INFO     | sizes: {0: 2296973, 1: 2297228, 12: 2297228, 23: 2297256, 34: 2297284, 44: 2297312, 55: 2297468, 66: 2297496, 77: 2297524, 87: 2297580, 98: 2297608, 103: 2298178, 
[2025-11-20 23:47:09] 2025-11-20 22:45:56,121 | INFO     | --------------------------------------------------
[2025-11-20 23:47:09] 2025-11-20 22:45:56,121 | INFO     | 
[2025-11-20 23:47:09] 2025-11-20 22:45:56,121 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-20 23:47:09] 2025-11-20 22:45:56,519 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 23:47:09] 2025-11-20 22:45:56,520 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 23:47:09] 2025-11-20 22:45:56,520 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 23:47:09] 2025-11-20 22:45:56,520 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 23:47:09] 2025-11-20 22:45:56,520 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 23:47:09] 2025-11-20 22:45:56,520 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 23:47:09] 2025-11-20 22:45:56,520 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 23:47:09] 2025-11-20 22:45:56,520 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 23:47:09] 2025-11-20 22:45:56,520 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 23:47:09] 2025-11-20 22:45:56,521 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 23:47:09] 2025-11-20 22:45:56,521 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 23:47:09] 2025-11-20 22:45:56,521 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 23:47:09] 2025-11-20 22:45:56,521 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 23:47:09] 2025-11-20 22:45:56,521 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 23:47:09] 2025-11-20 22:45:56,521 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 23:47:09] 2025-11-20 22:45:56,521 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 23:47:09] 2025-11-20 22:45:56,521 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 23:47:09] 2025-11-20 22:45:56,522 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 23:47:09] 2025-11-20 22:45:56,522 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 23:47:09] 2025-11-20 22:45:56,522 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 23:47:09] 2025-11-20 22:45:56,522 | INFO     | job 6891581182 has completed (purged errors)
[2025-11-20 23:47:09] 2025-11-20 22:45:56,522 | INFO     | overall cleanup function is called
[2025-11-20 23:47:09] 2025-11-20 22:45:57,540 | INFO     | --- collectZombieJob: --- 10, [2245]
[2025-11-20 23:47:09] 2025-11-20 22:45:57,540 | INFO     | zombie collector waiting for pid 2245
[2025-11-20 23:47:09] 2025-11-20 22:45:57,540 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 23:47:09] 2025-11-20 22:45:57,540 | INFO     | collected zombie processes
[2025-11-20 23:47:09] 2025-11-20 22:45:57,540 | INFO     | will attempt to kill all subprocesses of pid=2245
[2025-11-20 23:47:09] 2025-11-20 22:45:57,682 | INFO     | process IDs to be killed: [2245] (in reverse order)
[2025-11-20 23:47:09] 2025-11-20 22:45:58,354 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 23:47:09] 2025-11-20 22:45:58,355 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 23:47:09] 2025-11-20 22:45:58,358 | INFO     | did not find any defunct processes belonging to 2245
[2025-11-20 23:47:09] 2025-11-20 22:45:58,361 | INFO     | did not find any defunct processes belonging to 2245
[2025-11-20 23:47:09] 2025-11-20 22:45:58,413 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 23:47:09] 2025-11-20 22:45:58,414 | INFO     | ready for new job
[2025-11-20 23:47:09] 2025-11-20 22:45:58,414 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 23:47:09] 2025-11-20 22:45:58,420 | INFO     | ***************************************
[2025-11-20 23:47:09] 2025-11-20 22:45:58,420 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 23:47:09] 2025-11-20 22:45:58,421 | INFO     | ***************************************
[2025-11-20 23:47:09] 2025-11-20 22:45:58,421 | INFO     | 
[2025-11-20 23:47:09] 2025-11-20 22:45:58,421 | INFO     | pilot is running in a VM
[2025-11-20 23:47:09] 2025-11-20 22:45:58,421 | INFO     | architecture information:
[2025-11-20 23:47:09] 2025-11-20 22:45:58,428 | INFO     | executing command: cat /etc/os-release
[2025-11-20 23:47:09] 2025-11-20 22:45:58,638 | INFO     | cat /etc/os-release:
[2025-11-20 23:47:09] NAME="CentOS Linux"
[2025-11-20 23:47:09] VERSION="7 (Core)"
[2025-11-20 23:47:09] ID="centos"
[2025-11-20 23:47:09] ID_LIKE="rhel fedora"
[2025-11-20 23:47:09] VERSION_ID="7"
[2025-11-20 23:47:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 23:47:09] ANSI_COLOR="0;31"
[2025-11-20 23:47:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 23:47:09] HOME_URL="https://www.centos.org/"
[2025-11-20 23:47:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 23:47:09] 
[2025-11-20 23:47:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 23:47:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 23:47:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 23:47:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 23:47:09] 
[2025-11-20 23:47:09] 2025-11-20 22:45:58,639 | INFO     | ***************************************
[2025-11-20 23:47:09] 2025-11-20 22:45:59,141 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-20 23:47:09] 2025-11-20 22:45:59,333 | INFO     | sufficient remaining disk space (495094595584 B)
[2025-11-20 23:47:09] 2025-11-20 22:45:59,334 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 23:47:09] 2025-11-20 22:45:59,334 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 23:47:09] 2025-11-20 22:45:59,334 | INFO     | update_server=False
[2025-11-20 23:47:09] 2025-11-20 22:45:59,334 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 23:47:09] 2025-11-20 22:45:59,336 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:47:09] 2025-11-20 22:45:59,336 | INFO     | aborting loop
[2025-11-20 23:47:09] 2025-11-20 22:46:00,018 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 23:47:09] 2025-11-20 22:46:00,057 | INFO     | all data control threads have been joined
[2025-11-20 23:47:09] 2025-11-20 22:46:00,339 | INFO     | [job] retrieve thread has finished
[2025-11-20 23:47:09] 2025-11-20 22:46:00,342 | INFO     | [job] job monitor thread has finished
[2025-11-20 23:47:09] 2025-11-20 22:46:00,446 | INFO     | [payload] failed_post thread has finished
[2025-11-20 23:47:09] 2025-11-20 22:46:00,585 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 23:47:09] 2025-11-20 22:46:00,684 | INFO     | [payload] validate_post thread has finished
[2025-11-20 23:47:09] 2025-11-20 22:46:00,847 | INFO     | all payload control threads have been joined
[2025-11-20 23:47:09] 2025-11-20 22:46:00,856 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 23:47:09] 2025-11-20 22:46:01,003 | INFO     | all job control threads have been joined
[2025-11-20 23:47:09] 2025-11-20 22:46:01,063 | INFO     | [data] control thread has finished
[2025-11-20 23:47:09] 2025-11-20 22:46:01,085 | INFO     | [data] copytool_in thread has finished
[2025-11-20 23:47:09] 2025-11-20 22:46:01,090 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 23:47:09] 2025-11-20 22:46:01,126 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 23:47:09] 2025-11-20 22:46:01,141 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:47:09] 2025-11-20 22:46:01,259 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 23:47:09] 2025-11-20 22:46:01,818 | INFO     | [job] validate thread has finished
[2025-11-20 23:47:09] 2025-11-20 22:46:01,853 | INFO     | [payload] control thread has finished
[2025-11-20 23:47:09] 2025-11-20 22:46:02,009 | INFO     | [job] control thread has finished
[2025-11-20 23:47:09] 2025-11-20 22:46:02,025 | INFO     | [data] copytool_out thread has finished
[2025-11-20 23:47:09] 2025-11-20 22:46:02,147 | INFO     | [job] queue monitor thread has finished
[2025-11-20 23:47:09] 2025-11-20 22:46:05,135 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 23:47:09] 2025-11-20 22:46:28,447 | INFO     | PID=28121 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 23:47:09] 2025-11-20 22:46:28,447 | INFO     | .. there are 9 such processes running
[2025-11-20 23:47:09] 2025-11-20 22:46:28,448 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 23:47:09] 2025-11-20 22:46:28,448 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 23:47:09] 2025-11-20 22:46:28,448 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 23:47:09] 2025-11-20 22:46:57,877 | INFO     | [monitor] cgroup control has ended
[2025-11-20 23:47:09] 2025-11-20 22:46:59,278 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139851414337344)>', '<ExcThread(monitor, started 139850804078336)>']
[2025-11-20 23:47:09] 2025-11-20 22:46:59,634 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 23:47:09] 2025-11-20 22:46:59,634 | INFO     | [monitor] control thread has ended
[2025-11-20 23:47:09] 2025-11-20 22:47:04,304 | INFO     | all workflow threads have been joined
[2025-11-20 23:47:09] 2025-11-20 22:47:04,304 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 23:47:09] 2025-11-20 22:47:04,304 | INFO     | traces error code: 0
[2025-11-20 23:47:09] 2025-11-20 22:47:04,305 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 23:47:09] 2025-11-20 22:47:04,799 [wrapper] ==== pilot stdout END ====
[2025-11-20 23:47:09] 2025-11-20 22:47:04,896 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 23:47:09] 2025-11-20 22:47:04,951 [wrapper] pilotpid: 28121
[2025-11-20 23:47:09] 2025-11-20 22:47:05,069 [wrapper] Pilot exit status: 0
[2025-11-20 23:47:09] 2025-11-20 22:47:05,438 [wrapper] pandaids: 6891581182
[2025-11-20 23:47:09] 2025-11-20 22:47:06,168 [wrapper] cleanup supervisor_pilot 25036 28122
[2025-11-20 23:47:09] 2025-11-20 22:47:06,259 [wrapper] Test setup, not cleaning
[2025-11-20 23:47:09] 2025-11-20 22:47:06,362 [wrapper] apfmon messages muted
[2025-11-20 23:47:09] 2025-11-20 22:47:06,423 [wrapper] ==== wrapper stdout END ====
[2025-11-20 23:47:09] 2025-11-20 22:47:06,516 [wrapper] ==== wrapper stderr END ====
[2025-11-20 23:47:09]  *** Error codes and diagnostics ***
[2025-11-20 23:47:09]     "exeErrorCode": 0,
[2025-11-20 23:47:09]     "exeErrorDiag": "",
[2025-11-20 23:47:09]     "pilotErrorCode": 0,
[2025-11-20 23:47:09]     "pilotErrorDiag": "",
[2025-11-20 23:47:09]  *** Listing of results directory ***
[2025-11-20 23:47:09] total 1319312
[2025-11-20 23:47:09] -rw-r--r--. 1 boinc boinc    576529 Nov 18 17:45 pilot3.tar.gz
[2025-11-20 23:47:09] -rw-r--r--. 1 boinc boinc      5112 Nov 18 18:02 queuedata.json
[2025-11-20 23:47:09] -rwx------. 1 boinc boinc     36292 Nov 18 18:02 runpilot2-wrapper.sh
[2025-11-20 23:47:09] -rw-r--r--. 1 boinc boinc       100 Nov 19 22:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 23:47:09] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 22:38 run_atlas
[2025-11-20 23:47:09] -rw-r--r--. 1 boinc boinc       105 Nov 19 22:38 job.xml
[2025-11-20 23:47:09] -rw-r--r--. 2 boinc boinc 408443317 Nov 19 22:38 EVNT.47493065._000413.pool.root.1
[2025-11-20 23:47:09] -rw-r--r--. 1 boinc boinc      6388 Nov 19 22:38 init_data.xml
[2025-11-20 23:47:09] -rw-r--r--. 2 boinc boinc     15120 Nov 19 22:38 start_atlas.sh
[2025-11-20 23:47:09] drwxrwx--x. 2 boinc boinc        68 Nov 19 22:38 shared
[2025-11-20 23:47:09] -rw-r--r--. 2 boinc boinc    590096 Nov 19 22:38 input.tar.gz
[2025-11-20 23:47:09] -rw-r--r--. 1 boinc boinc         0 Nov 19 22:38 boinc_lockfile
[2025-11-20 23:47:09] -rw-r--r--. 1 boinc boinc      2773 Nov 19 22:38 pandaJob.out
[2025-11-20 23:47:09] -rw-------. 1 boinc boinc    989443 Nov 19 22:42 agis_schedconf.cvmfs.json
[2025-11-20 23:47:09] drwx------. 5 boinc boinc      4096 Nov 19 22:42 pilot3
[2025-11-20 23:47:09] -rw-r--r--. 1 boinc boinc       533 Nov 20 23:16 boinc_task_state.xml
[2025-11-20 23:47:09] -rw-------. 1 boinc boinc 909457869 Nov 20 23:42 HITS.47493068._004128.pool.root.1
[2025-11-20 23:47:09] -rw-------. 1 boinc boinc      1031 Nov 20 23:44 memory_monitor_summary.json
[2025-11-20 23:47:09] -rw-------. 1 boinc boinc   1526164 Nov 20 23:44 agis_ddmendpoints.agis.ALL.json
[2025-11-20 23:47:09] -rw-------. 1 boinc boinc   2549859 Nov 20 23:44 log.47493068._004128.job.log.tgz.1
[2025-11-20 23:47:09] -rw-------. 1 boinc boinc      8628 Nov 20 23:45 heartbeat.json
[2025-11-20 23:47:09] -rw-------. 1 boinc boinc        95 Nov 20 23:46 pilot_heartbeat.json
[2025-11-20 23:47:09] -rw-r--r--. 1 boinc boinc      8192 Nov 20 23:46 boinc_mmap_file
[2025-11-20 23:47:09] -rw-r--r--. 1 boinc boinc        29 Nov 20 23:46 wrapper_checkpoint.txt
[2025-11-20 23:47:09] -rw-------. 1 boinc boinc      4884 Nov 20 23:47 pilotlog.txt
[2025-11-20 23:47:09] -rw-------. 1 boinc boinc  12030752 Nov 20 23:47 log.47493068._004128.job.log.1
[2025-11-20 23:47:09] -rw-------. 1 boinc boinc       353 Nov 20 23:47 output.list
[2025-11-20 23:47:09] -rw-r--r--. 1 boinc boinc       620 Nov 20 23:47 runtime_log
[2025-11-20 23:47:09] -rw-------. 1 boinc boinc  14602240 Nov 20 23:47 result.tar.gz
[2025-11-20 23:47:09] -rw-r--r--. 1 boinc boinc      8703 Nov 20 23:47 runtime_log.err
[2025-11-20 23:47:09] -rw-------. 1 boinc boinc       662 Nov 20 23:47 fcIKDm7Gef8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmNVFKDm2UWvtn.diag
[2025-11-20 23:47:09] -rw-r--r--. 1 boinc boinc     21512 Nov 20 23:47 stderr.txt
[2025-11-20 23:47:09] HITS file was successfully produced:
[2025-11-20 23:47:09] -rw-------. 1 boinc boinc 909457869 Nov 20 23:42 shared/HITS.pool.root.1
[2025-11-20 23:47:09]  *** Contents of shared directory: ***
[2025-11-20 23:47:09] total 1301872
[2025-11-20 23:47:09] -rw-r--r--. 2 boinc boinc 408443317 Nov 19 22:38 ATLAS.root_0
[2025-11-20 23:47:09] -rw-r--r--. 2 boinc boinc     15120 Nov 19 22:38 start_atlas.sh
[2025-11-20 23:47:09] -rw-r--r--. 2 boinc boinc    590096 Nov 19 22:38 input.tar.gz
[2025-11-20 23:47:09] -rw-------. 1 boinc boinc 909457869 Nov 20 23:42 HITS.pool.root.1
[2025-11-20 23:47:09] -rw-------. 1 boinc boinc  14602240 Nov 20 23:47 result.tar.gz
23:47:11 (24331): run_atlas exited; CPU time 331737.059668
23:47:11 (24331): called boinc_finish(0)

</stderr_txt>
]]>

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