Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:47:17 (27558): wrapper (7.7.26015): starting
23:47:17 (27558): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 23:47:17] Arguments: --nthreads 8
[2025-11-20 23:47:17] Threads: 8
[2025-11-20 23:47:17] Checking for CVMFS
[2025-11-20 23:47:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 23:47:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 23:47:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 23:47:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 23:47:20] 2.11.2.0 7869 277199 139960 153098 1 84 16791208 25165825 4632 130560 2 134831118 99.884 72740371 2855 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-20 23:47:20] CVMFS is ok
[2025-11-20 23:47:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 23:47:20] Checking for apptainer binary...
[2025-11-20 23:47:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 23:47:20] Running /usr/bin/apptainer --version
[2025-11-20 23:47:20] apptainer version 1.3.2-1.el7
[2025-11-20 23:47:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 23:47:48] cg-vwn276.simple-grid.lan
[2025-11-20 23:47:48] apptainer works
[2025-11-20 23:47:48] Set ATHENA_PROC_NUMBER=8
[2025-11-20 23:47:48] Set ATHENA_CORE_NUMBER=8
[2025-11-20 23:47:48] Starting ATLAS job with PandaID=6891581216
[2025-11-20 23:47:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 01:11:45]  *** The last 200 lines of the pilot log: ***
[2025-11-22 01:11:45] 2025-11-22 00:10:58,051 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 01:11:45] 2025-11-22 00:10:58,052 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-22 01:11:45] 2025-11-22 00:10:58,054 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6891581216/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 01:11:45] 2025-11-22 00:10:58,055 | INFO     | extracted standard info from prmon json
[2025-11-22 01:11:45] 2025-11-22 00:10:58,055 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 01:11:45] 2025-11-22 00:10:58,055 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 01:11:45] 2025-11-22 00:10:58,087 | INFO     | fitting pss+swap vs Time
[2025-11-22 01:11:45] 2025-11-22 00:10:58,089 | INFO     | sum of square deviations: 1015447412617.6876
[2025-11-22 01:11:45] 2025-11-22 00:10:58,166 | INFO     | sum of deviations: 4406454598143.604
[2025-11-22 01:11:45] 2025-11-22 00:10:58,166 | INFO     | mean x: 1763724922.3542087
[2025-11-22 01:11:45] 2025-11-22 00:10:58,166 | INFO     | mean y: 2865832.5501683503
[2025-11-22 01:11:45] 2025-11-22 00:10:58,166 | INFO     | intersect: -7650680473.637742
[2025-11-22 01:11:45] 2025-11-22 00:10:58,169 | INFO     | chi2: 10.667006707941372
[2025-11-22 01:11:45] 2025-11-22 00:10:58,171 | INFO     | sum of square deviations: 1005225471503.4802
[2025-11-22 01:11:45] 2025-11-22 00:10:58,236 | INFO     | sum of deviations: 4889348667903.823
[2025-11-22 01:11:45] 2025-11-22 00:10:58,237 | INFO     | mean x: 1763724769.8587837
[2025-11-22 01:11:45] 2025-11-22 00:10:58,237 | INFO     | mean y: 2873037.7216216214
[2025-11-22 01:11:45] 2025-11-22 00:10:58,237 | INFO     | intersect: -8575764888.31522
[2025-11-22 01:11:45] 2025-11-22 00:10:58,239 | INFO     | chi2: 7.7254684120470545
[2025-11-22 01:11:45] 2025-11-22 00:10:58,239 | INFO     | current chi2=7.7254684120470545 (change=27.57604243095114 %)
[2025-11-22 01:11:45] 2025-11-22 00:10:58,242 | INFO     | sum of square deviations: 995072188698.6753
[2025-11-22 01:11:45] 2025-11-22 00:10:58,275 | INFO     | time since job start (91137s) is within the limit (172800.0s)
[2025-11-22 01:11:45] 2025-11-22 00:10:58,317 | INFO     | sum of deviations: 5116118118398.593
[2025-11-22 01:11:45] 2025-11-22 00:10:58,317 | INFO     | mean x: 1763724617.3620338
[2025-11-22 01:11:45] 2025-11-22 00:10:58,317 | INFO     | mean y: 2876438.7105084746
[2025-11-22 01:11:45] 2025-11-22 00:10:58,318 | INFO     | intersect: -9065232964.037529
[2025-11-22 01:11:45] 2025-11-22 00:10:58,319 | INFO     | chi2: 6.584542946087891
[2025-11-22 01:11:45] 2025-11-22 00:10:58,320 | INFO     | current chi2=6.584542946087891 (change=14.768366202624177 %)
[2025-11-22 01:11:45] 2025-11-22 00:10:58,320 | INFO     | right removable region: 1474
[2025-11-22 01:11:45] 2025-11-22 00:10:58,322 | INFO     | sum of square deviations: 1005224244793.483
[2025-11-22 01:11:45] 2025-11-22 00:10:58,389 | INFO     | sum of deviations: 3775594340862.0503
[2025-11-22 01:11:45] 2025-11-22 00:10:58,390 | INFO     | mean x: 1763725074.8587837
[2025-11-22 01:11:45] 2025-11-22 00:10:58,390 | INFO     | mean y: 2875242.804054054
[2025-11-22 01:11:45] 2025-11-22 00:10:58,390 | INFO     | intersect: -6621627146.552255
[2025-11-22 01:11:45] 2025-11-22 00:10:58,392 | INFO     | chi2: 5.924222091201994
[2025-11-22 01:11:45] 2025-11-22 00:10:58,392 | INFO     | current chi2=5.924222091201994 (change=44.46218837763053 %)
[2025-11-22 01:11:45] 2025-11-22 00:10:58,395 | INFO     | sum of square deviations: 995070095666.6743
[2025-11-22 01:11:45] 2025-11-22 00:10:58,455 | INFO     | sum of deviations: 3475270414561.412
[2025-11-22 01:11:45] 2025-11-22 00:10:58,456 | INFO     | mean x: 1763725227.3620338
[2025-11-22 01:11:45] 2025-11-22 00:10:58,456 | INFO     | mean y: 2879748.6752542374
[2025-11-22 01:11:45] 2025-11-22 00:10:58,456 | INFO     | intersect: -6156909525.225398
[2025-11-22 01:11:45] 2025-11-22 00:10:58,458 | INFO     | chi2: 4.6484295079484035
[2025-11-22 01:11:45] 2025-11-22 00:10:58,458 | INFO     | current chi2=4.6484295079484035 (change=21.53519168614995 %)
[2025-11-22 01:11:45] 2025-11-22 00:10:58,458 | INFO     | left removable region: 20
[2025-11-22 01:11:45] 2025-11-22 00:10:58,460 | INFO     | sum of square deviations: 953171884010.9518
[2025-11-22 01:11:45] 2025-11-22 00:10:58,521 | INFO     | sum of deviations: 3987223259869.283
[2025-11-22 01:11:45] 2025-11-22 00:10:58,522 | INFO     | mean x: 1763725196.8713894
[2025-11-22 01:11:45] 2025-11-22 00:10:58,522 | INFO     | mean y: 2893896.482806052
[2025-11-22 01:11:45] 2025-11-22 00:10:58,522 | INFO     | intersect: -7374963389.226152
[2025-11-22 01:11:45] 2025-11-22 00:10:58,524 | INFO     | chi2: 0.3859105177520114
[2025-11-22 01:11:45] 2025-11-22 00:10:58,524 | INFO     | current memory leak: 4.18 B/s (using 1454 data points, chi2=0.39)
[2025-11-22 01:11:45] 2025-11-22 00:10:58,527 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-22 01:11:45] 2025-11-22 00:10:58,527 | INFO     | ..............................
[2025-11-22 01:11:45] 2025-11-22 00:10:58,527 | INFO     | . Timing measurements:
[2025-11-22 01:11:45] 2025-11-22 00:10:58,527 | INFO     | . get job = 0 s
[2025-11-22 01:11:45] 2025-11-22 00:10:58,527 | INFO     | . initial setup = 9 s
[2025-11-22 01:11:45] 2025-11-22 00:10:58,527 | INFO     | . payload setup = 151 s
[2025-11-22 01:11:45] 2025-11-22 00:10:58,528 | INFO     | . stage-in = 0 s
[2025-11-22 01:11:45] 2025-11-22 00:10:58,528 | INFO     | . payload execution = 90749 s
[2025-11-22 01:11:45] 2025-11-22 00:10:58,528 | INFO     | . stage-out = 5 s
[2025-11-22 01:11:45] 2025-11-22 00:10:58,528 | INFO     | . log creation = 1 s
[2025-11-22 01:11:45] 2025-11-22 00:10:58,528 | INFO     | ..............................
[2025-11-22 01:11:45] 2025-11-22 00:10:59,137 | INFO     | 
[2025-11-22 01:11:45] 2025-11-22 00:10:59,137 | INFO     | job summary report
[2025-11-22 01:11:45] 2025-11-22 00:10:59,137 | INFO     | --------------------------------------------------
[2025-11-22 01:11:45] 2025-11-22 00:10:59,137 | INFO     | PanDA job id: 6891581216
[2025-11-22 01:11:45] 2025-11-22 00:10:59,137 | INFO     | task id: 47493068
[2025-11-22 01:11:45] 2025-11-22 00:10:59,138 | INFO     | errors: (none)
[2025-11-22 01:11:45] 2025-11-22 00:10:59,138 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 01:11:45] 2025-11-22 00:10:59,138 | INFO     | pilot state: finished 
[2025-11-22 01:11:45] 2025-11-22 00:10:59,138 | INFO     | transexitcode: 0
[2025-11-22 01:11:45] 2025-11-22 00:10:59,138 | INFO     | exeerrorcode: 0
[2025-11-22 01:11:45] 2025-11-22 00:10:59,138 | INFO     | exeerrordiag: 
[2025-11-22 01:11:45] 2025-11-22 00:10:59,138 | INFO     | exitcode: 0
[2025-11-22 01:11:45] 2025-11-22 00:10:59,138 | INFO     | exitmsg: OK
[2025-11-22 01:11:45] 2025-11-22 00:10:59,139 | INFO     | cpuconsumptiontime: 338797 s
[2025-11-22 01:11:45] 2025-11-22 00:10:59,139 | INFO     | nevents: 1000
[2025-11-22 01:11:45] 2025-11-22 00:10:59,139 | INFO     | neventsw: 0
[2025-11-22 01:11:45] 2025-11-22 00:10:59,139 | INFO     | pid: 5558
[2025-11-22 01:11:45] 2025-11-22 00:10:59,139 | INFO     | pgrp: 5558
[2025-11-22 01:11:45] 2025-11-22 00:10:59,139 | INFO     | corecount: 8
[2025-11-22 01:11:45] 2025-11-22 00:10:59,139 | INFO     | event service: False
[2025-11-22 01:11:45] 2025-11-22 00:10:59,139 | INFO     | sizes: {0: 2298625, 1: 2298824, 2: 2298852, 13: 2298852, 23: 2298908, 34: 2298936, 45: 2299092, 55: 2299120, 66: 2299148, 77: 2299176, 88: 2299232, 99: 2299540, 10
[2025-11-22 01:11:45] 2025-11-22 00:10:59,139 | INFO     | --------------------------------------------------
[2025-11-22 01:11:45] 2025-11-22 00:10:59,140 | INFO     | 
[2025-11-22 01:11:45] 2025-11-22 00:10:59,140 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-22 01:11:45] 2025-11-22 00:10:59,169 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 01:11:45] 2025-11-22 00:10:59,169 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 01:11:45] 2025-11-22 00:10:59,169 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 01:11:45] 2025-11-22 00:10:59,169 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 01:11:45] 2025-11-22 00:10:59,169 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 01:11:45] 2025-11-22 00:10:59,170 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 01:11:45] 2025-11-22 00:10:59,170 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 01:11:45] 2025-11-22 00:10:59,170 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 01:11:45] 2025-11-22 00:10:59,170 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 01:11:45] 2025-11-22 00:10:59,170 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 01:11:45] 2025-11-22 00:10:59,170 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 01:11:45] 2025-11-22 00:10:59,170 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 01:11:45] 2025-11-22 00:10:59,170 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 01:11:45] 2025-11-22 00:10:59,170 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 01:11:45] 2025-11-22 00:10:59,170 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 01:11:45] 2025-11-22 00:10:59,171 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 01:11:45] 2025-11-22 00:10:59,171 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 01:11:45] 2025-11-22 00:10:59,171 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 01:11:45] 2025-11-22 00:10:59,171 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 01:11:45] 2025-11-22 00:10:59,171 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 01:11:45] 2025-11-22 00:10:59,171 | INFO     | job 6891581216 has completed (purged errors)
[2025-11-22 01:11:45] 2025-11-22 00:10:59,172 | INFO     | overall cleanup function is called
[2025-11-22 01:11:45] 2025-11-22 00:11:00,191 | INFO     | --- collectZombieJob: --- 10, [5558]
[2025-11-22 01:11:45] 2025-11-22 00:11:00,191 | INFO     | zombie collector waiting for pid 5558
[2025-11-22 01:11:45] 2025-11-22 00:11:00,191 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 01:11:45] 2025-11-22 00:11:00,192 | INFO     | collected zombie processes
[2025-11-22 01:11:45] 2025-11-22 00:11:00,192 | INFO     | will attempt to kill all subprocesses of pid=5558
[2025-11-22 01:11:45] 2025-11-22 00:11:00,307 | INFO     | process IDs to be killed: [5558] (in reverse order)
[2025-11-22 01:11:45] 2025-11-22 00:11:00,402 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 01:11:45] 2025-11-22 00:11:00,403 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 01:11:45] 2025-11-22 00:11:00,408 | INFO     | did not find any defunct processes belonging to 5558
[2025-11-22 01:11:45] 2025-11-22 00:11:00,413 | INFO     | did not find any defunct processes belonging to 5558
[2025-11-22 01:11:45] 2025-11-22 00:11:00,415 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 01:11:45] 2025-11-22 00:11:00,415 | INFO     | ready for new job
[2025-11-22 01:11:45] 2025-11-22 00:11:00,415 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 01:11:45] 2025-11-22 00:11:00,423 | INFO     | ***************************************
[2025-11-22 01:11:45] 2025-11-22 00:11:00,423 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 01:11:45] 2025-11-22 00:11:00,424 | INFO     | ***************************************
[2025-11-22 01:11:45] 2025-11-22 00:11:00,424 | INFO     | 
[2025-11-22 01:11:45] 2025-11-22 00:11:00,424 | INFO     | pilot is running in a VM
[2025-11-22 01:11:45] 2025-11-22 00:11:00,425 | INFO     | architecture information:
[2025-11-22 01:11:45] 2025-11-22 00:11:00,425 | INFO     | executing command: cat /etc/os-release
[2025-11-22 01:11:45] 2025-11-22 00:11:00,461 | INFO     | cat /etc/os-release:
[2025-11-22 01:11:45] NAME="CentOS Linux"
[2025-11-22 01:11:45] VERSION="7 (Core)"
[2025-11-22 01:11:45] ID="centos"
[2025-11-22 01:11:45] ID_LIKE="rhel fedora"
[2025-11-22 01:11:45] VERSION_ID="7"
[2025-11-22 01:11:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 01:11:45] ANSI_COLOR="0;31"
[2025-11-22 01:11:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 01:11:45] HOME_URL="https://www.centos.org/"
[2025-11-22 01:11:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 01:11:45] 
[2025-11-22 01:11:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 01:11:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 01:11:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 01:11:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 01:11:45] 
[2025-11-22 01:11:45] 2025-11-22 00:11:00,462 | INFO     | ***************************************
[2025-11-22 01:11:45] 2025-11-22 00:11:00,965 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-22 01:11:45] 2025-11-22 00:11:00,994 | INFO     | sufficient remaining disk space (495308505088 B)
[2025-11-22 01:11:45] 2025-11-22 00:11:00,995 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 01:11:45] 2025-11-22 00:11:00,995 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 01:11:45] 2025-11-22 00:11:00,995 | INFO     | update_server=False
[2025-11-22 01:11:45] 2025-11-22 00:11:00,995 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 01:11:45] 2025-11-22 00:11:00,996 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 01:11:45] 2025-11-22 00:11:00,996 | INFO     | aborting loop
[2025-11-22 01:11:45] 2025-11-22 00:11:01,093 | INFO     | all data control threads have been joined
[2025-11-22 01:11:45] 2025-11-22 00:11:01,188 | INFO     | all payload control threads have been joined
[2025-11-22 01:11:45] 2025-11-22 00:11:01,537 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 01:11:45] 2025-11-22 00:11:01,915 | INFO     | all job control threads have been joined
[2025-11-22 01:11:45] 2025-11-22 00:11:02,002 | INFO     | [job] job monitor thread has finished
[2025-11-22 01:11:45] 2025-11-22 00:11:02,003 | INFO     | [job] retrieve thread has finished
[2025-11-22 01:11:45] 2025-11-22 00:11:02,099 | INFO     | [data] control thread has finished
[2025-11-22 01:11:45] 2025-11-22 00:11:02,194 | INFO     | [payload] control thread has finished
[2025-11-22 01:11:45] 2025-11-22 00:11:02,361 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 01:11:45] 2025-11-22 00:11:02,362 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 01:11:45] 2025-11-22 00:11:02,364 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 01:11:45] 2025-11-22 00:11:02,432 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 01:11:45] 2025-11-22 00:11:02,498 | INFO     | [job] validate thread has finished
[2025-11-22 01:11:45] 2025-11-22 00:11:02,607 | INFO     | [payload] failed_post thread has finished
[2025-11-22 01:11:45] 2025-11-22 00:11:02,608 | INFO     | [payload] validate_post thread has finished
[2025-11-22 01:11:45] 2025-11-22 00:11:02,921 | INFO     | [job] control thread has finished
[2025-11-22 01:11:45] 2025-11-22 00:11:03,223 | INFO     | [data] copytool_in thread has finished
[2025-11-22 01:11:45] 2025-11-22 00:11:03,544 | INFO     | [data] copytool_out thread has finished
[2025-11-22 01:11:45] 2025-11-22 00:11:03,673 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 01:11:45] 2025-11-22 00:11:04,679 | INFO     | [job] queue monitor thread has finished
[2025-11-22 01:11:45] 2025-11-22 00:11:06,441 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 01:11:45] 2025-11-22 00:11:11,763 | INFO     | job.realtimelogging is not enabled
[2025-11-22 01:11:45] 2025-11-22 00:11:12,769 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 01:11:45] 2025-11-22 00:11:31,509 | INFO     | PID=31349 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 01:11:45] 2025-11-22 00:11:31,509 | INFO     | .. there are 9 such processes running
[2025-11-22 01:11:45] 2025-11-22 00:11:31,509 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 01:11:45] 2025-11-22 00:11:31,509 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 01:11:45] 2025-11-22 00:11:31,509 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 01:11:45] 2025-11-22 00:11:39,824 | INFO     | [monitor] cgroup control has ended
[2025-11-22 01:11:45] 2025-11-22 00:11:40,152 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140077074552640)>', '<ExcThread(monitor, started 140076625405696)>']
[2025-11-22 01:11:45] 2025-11-22 00:11:40,565 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 01:11:45] 2025-11-22 00:11:40,565 | INFO     | [monitor] control thread has ended
[2025-11-22 01:11:45] 2025-11-22 00:11:45,178 | INFO     | all workflow threads have been joined
[2025-11-22 01:11:45] 2025-11-22 00:11:45,178 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 01:11:45] 2025-11-22 00:11:45,178 | INFO     | traces error code: 0
[2025-11-22 01:11:45] 2025-11-22 00:11:45,179 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 01:11:45] 2025-11-22 00:11:45,452 [wrapper] ==== pilot stdout END ====
[2025-11-22 01:11:45] 2025-11-22 00:11:45,457 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 01:11:45] 2025-11-22 00:11:45,461 [wrapper] pilotpid: 31349
[2025-11-22 01:11:45] 2025-11-22 00:11:45,465 [wrapper] Pilot exit status: 0
[2025-11-22 01:11:45] 2025-11-22 00:11:45,506 [wrapper] pandaids: 6891581216
[2025-11-22 01:11:45] 2025-11-22 00:11:45,581 [wrapper] cleanup supervisor_pilot 29360 31350
[2025-11-22 01:11:45] 2025-11-22 00:11:45,611 [wrapper] Test setup, not cleaning
[2025-11-22 01:11:45] 2025-11-22 00:11:45,630 [wrapper] apfmon messages muted
[2025-11-22 01:11:45] 2025-11-22 00:11:45,638 [wrapper] ==== wrapper stdout END ====
[2025-11-22 01:11:45] 2025-11-22 00:11:45,645 [wrapper] ==== wrapper stderr END ====
[2025-11-22 01:11:45]  *** Error codes and diagnostics ***
[2025-11-22 01:11:45]     "exeErrorCode": 0,
[2025-11-22 01:11:45]     "exeErrorDiag": "",
[2025-11-22 01:11:45]     "pilotErrorCode": 0,
[2025-11-22 01:11:45]     "pilotErrorDiag": "",
[2025-11-22 01:11:45]  *** Listing of results directory ***
[2025-11-22 01:11:45] total 1328424
[2025-11-22 01:11:45] -rw-r--r--. 1 boinc boinc    576529 Nov 18 17:45 pilot3.tar.gz
[2025-11-22 01:11:45] -rw-r--r--. 1 boinc boinc      5112 Nov 18 18:02 queuedata.json
[2025-11-22 01:11:45] -rwx------. 1 boinc boinc     36292 Nov 18 18:02 runpilot2-wrapper.sh
[2025-11-22 01:11:45] -rw-r--r--. 1 boinc boinc       100 Nov 20 23:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 01:11:45] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 23:47 run_atlas
[2025-11-22 01:11:45] -rw-r--r--. 1 boinc boinc       105 Nov 20 23:47 job.xml
[2025-11-22 01:11:45] -rw-r--r--. 2 boinc boinc 411084928 Nov 20 23:47 EVNT.47493065._000417.pool.root.1
[2025-11-22 01:11:45] -rw-r--r--. 2 boinc boinc    590096 Nov 20 23:47 input.tar.gz
[2025-11-22 01:11:45] -rw-r--r--. 1 boinc boinc      6389 Nov 20 23:47 init_data.xml
[2025-11-22 01:11:45] -rw-r--r--. 2 boinc boinc     15120 Nov 20 23:47 start_atlas.sh
[2025-11-22 01:11:45] drwxrwx--x. 2 boinc boinc        68 Nov 20 23:47 shared
[2025-11-22 01:11:45] -rw-r--r--. 1 boinc boinc         0 Nov 20 23:47 boinc_lockfile
[2025-11-22 01:11:45] -rw-r--r--. 1 boinc boinc      2773 Nov 20 23:47 pandaJob.out
[2025-11-22 01:11:45] -rw-------. 1 boinc boinc    989825 Nov 20 23:51 agis_schedconf.cvmfs.json
[2025-11-22 01:11:45] drwx------. 5 boinc boinc      4096 Nov 20 23:52 pilot3
[2025-11-22 01:11:45] -rw-r--r--. 1 boinc boinc       533 Nov 22 00:56 boinc_task_state.xml
[2025-11-22 01:11:45] -rw-------. 1 boinc boinc 916064212 Nov 22 01:09 HITS.47493068._004162.pool.root.1
[2025-11-22 01:11:45] -rw-------. 1 boinc boinc      1030 Nov 22 01:10 memory_monitor_summary.json
[2025-11-22 01:11:45] -rw-------. 1 boinc boinc   1526164 Nov 22 01:10 agis_ddmendpoints.agis.ALL.json
[2025-11-22 01:11:45] -rw-------. 1 boinc boinc   2553386 Nov 22 01:10 log.47493068._004162.job.log.tgz.1
[2025-11-22 01:11:45] -rw-------. 1 boinc boinc        95 Nov 22 01:10 pilot_heartbeat.json
[2025-11-22 01:11:45] -rw-------. 1 boinc boinc      7955 Nov 22 01:10 heartbeat.json
[2025-11-22 01:11:45] -rw-r--r--. 1 boinc boinc      8192 Nov 22 01:11 boinc_mmap_file
[2025-11-22 01:11:45] -rw-r--r--. 1 boinc boinc        29 Nov 22 01:11 wrapper_checkpoint.txt
[2025-11-22 01:11:45] -rw-------. 1 boinc boinc      4956 Nov 22 01:11 pilotlog.txt
[2025-11-22 01:11:45] -rw-------. 1 boinc boinc  12073707 Nov 22 01:11 log.47493068._004162.job.log.1
[2025-11-22 01:11:45] -rw-------. 1 boinc boinc       353 Nov 22 01:11 output.list
[2025-11-22 01:11:45] -rw-r--r--. 1 boinc boinc       620 Nov 22 01:11 runtime_log
[2025-11-22 01:11:45] -rw-------. 1 boinc boinc  14643200 Nov 22 01:11 result.tar.gz
[2025-11-22 01:11:45] -rw-------. 1 boinc boinc       662 Nov 22 01:11 Au5KDm7Gef8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmrVFKDmjjhQMm.diag
[2025-11-22 01:11:45] -rw-r--r--. 1 boinc boinc      8703 Nov 22 01:11 runtime_log.err
[2025-11-22 01:11:45] -rw-r--r--. 1 boinc boinc     20897 Nov 22 01:11 stderr.txt
[2025-11-22 01:11:46] HITS file was successfully produced:
[2025-11-22 01:11:46] -rw-------. 1 boinc boinc 916064212 Nov 22 01:09 shared/HITS.pool.root.1
[2025-11-22 01:11:46]  *** Contents of shared directory: ***
[2025-11-22 01:11:46] total 1310944
[2025-11-22 01:11:46] -rw-r--r--. 2 boinc boinc 411084928 Nov 20 23:47 ATLAS.root_0
[2025-11-22 01:11:46] -rw-r--r--. 2 boinc boinc    590096 Nov 20 23:47 input.tar.gz
[2025-11-22 01:11:46] -rw-r--r--. 2 boinc boinc     15120 Nov 20 23:47 start_atlas.sh
[2025-11-22 01:11:46] -rw-------. 1 boinc boinc 916064212 Nov 22 01:09 HITS.pool.root.1
[2025-11-22 01:11:46] -rw-------. 1 boinc boinc  14643200 Nov 22 01:11 result.tar.gz
01:11:48 (27558): run_atlas exited; CPU time 339281.819915
01:11:48 (27558): called boinc_finish(0)

</stderr_txt>
]]>

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