Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:28:09 (3588974): wrapper (7.7.26015): starting
12:28:09 (3588974): wrapper: running run_atlas (--nthreads 12)
[2025-11-18 12:28:09] Arguments: --nthreads 12
[2025-11-18 12:28:09] Threads: 12
[2025-11-18 12:28:09] Checking for CVMFS
[2025-11-18 12:28:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-18 12:28:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-18 12:28:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-18 12:28:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-18 12:28:10] 2.11.5.0 1719783 17061 248924 153013 1 468 42758716 45568000 11424 130560 0 160967529 99.765 112668363 29544 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-18 12:28:10] CVMFS is ok
[2025-11-18 12:28:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-18 12:28:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-18 12:28:10] Further information can be found at the LHC@home message board.
[2025-11-18 12:28:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-18 12:28:10] Checking for apptainer binary...
[2025-11-18 12:28:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-18 12:28:10] Running /usr/bin/apptainer --version
[2025-11-18 12:28:10] apptainer version 1.4.1-1.el9
[2025-11-18 12:28:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-18 12:28:10] wns0060.triumf.lcg
[2025-11-18 12:28:10] apptainer works
[2025-11-18 12:28:10] Set ATHENA_PROC_NUMBER=12
[2025-11-18 12:28:10] Set ATHENA_CORE_NUMBER=12
[2025-11-18 12:28:10] Starting ATLAS job with PandaID=6891570635
[2025-11-18 12:28:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-18 12:32:50]  *** The last 200 lines of the pilot log: ***
[2025-11-18 12:32:50] 2025-11-18 20:32:17,078 | INFO     | could have reported an average CPU frequency of 2678 MHz (4 samples)
[2025-11-18 12:32:50] 2025-11-18 20:32:17,078 | INFO     | ..............................
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | . Timing measurements:
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | . get job = 0 s
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | . initial setup = 3 s
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | . payload setup = 8 s
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | . stage-in = 0 s
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | . payload execution = 78 s
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | . stage-out = 0 s
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | . log creation = 0 s
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | ..............................
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891570635/pilotlog.txt
[2025-11-18 12:32:50] 2025-11-18 20:32:17,090 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-18 12:32:50] - Log from pilotlog.txt -
[2025-11-18 12:32:50] 2025-11-18 20:32:17,076 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891570635/memory_monitor_summary.json (trf name=prmon)
[2025-11-18 12:32:50] 2025-11-18 20:32:17,076 | INFO     | extracted standard info from prmon json
[2025-11-18 12:32:50] 2025-11-18 20:32:17,076 | INFO     | extracted standard memory fields from prmon json
[2025-11-18 12:32:50] 2025-11-18 20:32:17,076 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-18 12:32:50] 2025-11-18 20:32:17,077 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-18 12:32:50] 2025-11-18 20:32:17,077 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-18 12:32:50] 2025-11-18 20:32:17,078 | WARNING  | wrong length of table data, x=[1763497740.0, 1763497801.0], y=[1512.0, 709736.0] (must be same and length>=4)
[2025-11-18 12:32:50] 2025-11-18 20:32:17,078 | INFO     | could have reported an average CPU frequency of 2678 MHz (4 samples)
[2025-11-18 12:32:50] 2025-11-18 20:32:17,078 | INFO     | ..............................
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | . Timing measurements:
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | . get job = 0 s
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | . initial setup = 3 s
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | . payload setup = 8 s
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | . stage-in = 0 s
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | . payload execution = 78 s
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | . stage-out = 0 s
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | . log creation = 0 s
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | ..............................
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891570635/pilotlog.txt
[2025-11-18 12:32:50] 2025-11-18 20:32:17,090 | WARNING  | 
[2025-11-18 12:32:50] [begin log extracts]
[2025-11-18 12:32:50] - Log from pilotlog.txt -
[2025-11-18 12:32:50] 2025-11-18 20:32:17,076 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891570635/memory_monitor_summary.json (trf name=prmon)
[2025-11-18 12:32:50] 2025-11-18 20:32:17,076 | INFO     | extracted standard info from prmon json
[2025-11-18 12:32:50] 2025-11-18 20:32:17,076 | INFO     | extracted standard memory fields from prmon json
[2025-11-18 12:32:50] 2025-11-18 20:32:17,076 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-18 12:32:50] 2025-11-18 20:32:17,077 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-18 12:32:50] 2025-11-18 20:32:17,077 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-18 12:32:50] 2025-11-18 20:32:17,078 | WARNING  | wrong length of table data, x=[1763497740.0, 1763497801.0], y=[1512.0, 709736.0] (must be same and length>=4)
[2025-11-18 12:32:50] 2025-11-18 20:32:17,078 | INFO     | could have reported an average CPU frequency of 2678 MHz (4 samples)
[2025-11-18 12:32:50] 2025-11-18 20:32:17,078 | INFO     | ..............................
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | . Timing measurements:
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | . get job = 0 s
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | . initial setup = 3 s
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | . payload setup = 8 s
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | . stage-in = 0 s
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | . payload execution = 78 s
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | . stage-out = 0 s
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | . log creation = 0 s
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | ..............................
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 12:32:50] 2025-11-18 20:32:17,079 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891570635/pilotlog.txt
[2025-11-18 12:32:50] [end log extracts]
[2025-11-18 12:32:50] 2025-11-18 20:32:17,090 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-18 12:32:50] 2025-11-18 20:32:17,091 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-18 12:32:50] 2025-11-18 20:32:17,373 | INFO     | 
[2025-11-18 12:32:50] 2025-11-18 20:32:17,373 | INFO     | job summary report
[2025-11-18 12:32:50] 2025-11-18 20:32:17,373 | INFO     | --------------------------------------------------
[2025-11-18 12:32:50] 2025-11-18 20:32:17,373 | INFO     | PanDA job id: 6891570635
[2025-11-18 12:32:50] 2025-11-18 20:32:17,373 | INFO     | task id: 47493068
[2025-11-18 12:32:50] 2025-11-18 20:32:17,374 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-18 12:30:06,541 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-18 12:32:50] 2025-11-18 20:32:17,374 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-18 12:32:50] 2025-11-18 20:32:17,374 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-18 12:32:50] 2025-11-18 20:32:17,374 | INFO     | pilot state: failed 
[2025-11-18 12:32:50] 2025-11-18 20:32:17,374 | INFO     | transexitcode: 65
[2025-11-18 12:32:50] 2025-11-18 20:32:17,374 | INFO     | exeerrorcode: 65
[2025-11-18 12:32:50] 2025-11-18 20:32:17,374 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-18 12:32:50] 2025-11-18 20:32:17,374 | INFO     | exitcode: 65
[2025-11-18 12:32:50] 2025-11-18 20:32:17,374 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-18 12:32:50] 2025-11-18 20:32:17,374 | INFO     | cpuconsumptiontime: 40 s
[2025-11-18 12:32:50] 2025-11-18 20:32:17,374 | INFO     | nevents: 0
[2025-11-18 12:32:50] 2025-11-18 20:32:17,374 | INFO     | neventsw: 0
[2025-11-18 12:32:50] 2025-11-18 20:32:17,374 | INFO     | pid: 3615915
[2025-11-18 12:32:50] 2025-11-18 20:32:17,374 | INFO     | pgrp: 3615915
[2025-11-18 12:32:50] 2025-11-18 20:32:17,374 | INFO     | corecount: 12
[2025-11-18 12:32:50] 2025-11-18 20:32:17,374 | INFO     | event service: False
[2025-11-18 12:32:50] 2025-11-18 20:32:17,374 | INFO     | sizes: {0: 2297197, 1: 2297197, 7: 2297487, 11: 2297515, 91: 2322901, 92: 2327347, 215: 2327485}
[2025-11-18 12:32:50] 2025-11-18 20:32:17,374 | INFO     | --------------------------------------------------
[2025-11-18 12:32:50] 2025-11-18 20:32:17,374 | INFO     | 
[2025-11-18 12:32:50] 2025-11-18 20:32:17,374 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-18 12:32:50] 2025-11-18 20:32:17,390 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-18 12:32:50] 2025-11-18 20:32:17,391 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-18 12:32:50] 2025-11-18 20:32:17,391 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-18 12:32:50] 2025-11-18 20:32:17,391 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-18 12:32:50] 2025-11-18 20:32:17,391 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-18 12:32:50] 2025-11-18 20:32:17,391 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-18 12:32:50] 2025-11-18 20:32:17,391 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-18 12:32:50] 2025-11-18 20:32:17,391 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-18 12:32:50] 2025-11-18 20:32:17,391 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-18 12:32:50] 2025-11-18 20:32:17,391 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-18 12:32:50] 2025-11-18 20:32:17,391 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-18 12:32:50] 2025-11-18 20:32:17,391 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-18 12:32:50] 2025-11-18 20:32:17,391 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-18 12:32:50] 2025-11-18 20:32:17,391 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-18 12:32:50] 2025-11-18 20:32:17,391 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-18 12:32:50] 2025-11-18 20:32:17,391 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-18 12:32:50] 2025-11-18 20:32:17,391 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-18 12:32:50] 2025-11-18 20:32:17,391 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-18 12:32:50] 2025-11-18 20:32:17,391 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-18 12:32:50] 2025-11-18 20:32:17,391 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-18 12:32:50] 2025-11-18 20:32:17,392 | INFO     | job 6891570635 has completed (purged errors)
[2025-11-18 12:32:50] 2025-11-18 20:32:17,392 | INFO     | overall cleanup function is called
[2025-11-18 12:32:50] 2025-11-18 20:32:18,398 | INFO     | --- collectZombieJob: --- 10, [3615915]
[2025-11-18 12:32:50] 2025-11-18 20:32:18,399 | INFO     | zombie collector waiting for pid 3615915
[2025-11-18 12:32:50] 2025-11-18 20:32:18,399 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-18 12:32:50] 2025-11-18 20:32:18,399 | INFO     | collected zombie processes
[2025-11-18 12:32:50] 2025-11-18 20:32:18,399 | INFO     | will attempt to kill all subprocesses of pid=3615915
[2025-11-18 12:32:50] 2025-11-18 20:32:18,556 | INFO     | process IDs to be killed: [3615915] (in reverse order)
[2025-11-18 12:32:50] 2025-11-18 20:32:18,647 | WARNING  | found no corresponding commands to process id(s)
[2025-11-18 12:32:50] 2025-11-18 20:32:18,647 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-18 12:32:50] 2025-11-18 20:32:18,654 | INFO     | did not find any defunct processes belonging to 3615915
[2025-11-18 12:32:50] 2025-11-18 20:32:18,660 | INFO     | did not find any defunct processes belonging to 3615915
[2025-11-18 12:32:50] 2025-11-18 20:32:18,661 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-18 12:32:50] 2025-11-18 20:32:18,661 | INFO     | ready for new job
[2025-11-18 12:32:50] 2025-11-18 20:32:18,661 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-18 12:32:50] 2025-11-18 20:32:18,662 | INFO     | ***************************************
[2025-11-18 12:32:50] 2025-11-18 20:32:18,662 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-18 12:32:50] 2025-11-18 20:32:18,663 | INFO     | ***************************************
[2025-11-18 12:32:50] 2025-11-18 20:32:18,663 | INFO     | 
[2025-11-18 12:32:50] 2025-11-18 20:32:18,665 | INFO     | architecture information:
[2025-11-18 12:32:50] 2025-11-18 20:32:18,665 | INFO     | executing command: cat /etc/os-release
[2025-11-18 12:32:50] 2025-11-18 20:32:18,679 | INFO     | cat /etc/os-release:
[2025-11-18 12:32:50] NAME="CentOS Linux"
[2025-11-18 12:32:50] VERSION="7 (Core)"
[2025-11-18 12:32:50] ID="centos"
[2025-11-18 12:32:50] ID_LIKE="rhel fedora"
[2025-11-18 12:32:50] VERSION_ID="7"
[2025-11-18 12:32:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-18 12:32:50] ANSI_COLOR="0;31"
[2025-11-18 12:32:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-18 12:32:50] HOME_URL="https://www.centos.org/"
[2025-11-18 12:32:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-18 12:32:50] 
[2025-11-18 12:32:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-18 12:32:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-18 12:32:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-18 12:32:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-18 12:32:50] 
[2025-11-18 12:32:50] 2025-11-18 20:32:18,680 | INFO     | ***************************************
[2025-11-18 12:32:50] 2025-11-18 20:32:19,183 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-18 12:32:50] 2025-11-18 20:32:19,196 | INFO     | sufficient remaining disk space (2181220532224 B)
[2025-11-18 12:32:50] 2025-11-18 20:32:19,196 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-18 12:32:50] 2025-11-18 20:32:19,196 | INFO     | current server update state: UPDATING_FINAL
[2025-11-18 12:32:50] 2025-11-18 20:32:19,196 | INFO     | update_server=False
[2025-11-18 12:32:50] 2025-11-18 20:32:19,196 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-18 12:32:50] 2025-11-18 20:32:19,466 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-18 12:32:50] 2025-11-18 20:32:19,467 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-18 12:32:50] 2025-11-18 20:32:19,467 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-18 12:32:50] 2025-11-18 20:32:19,467 | INFO     | will abort loop
[2025-11-18 12:32:50] 2025-11-18 20:32:19,591 | INFO     | all payload control threads have been joined
[2025-11-18 12:32:50] 2025-11-18 20:32:19,856 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-18 12:32:50] 2025-11-18 20:32:19,867 | INFO     | all job control threads have been joined
[2025-11-18 12:32:50] 2025-11-18 20:32:19,879 | INFO     | all data control threads have been joined
[2025-11-18 12:32:50] 2025-11-18 20:32:20,203 | INFO     | [job] retrieve thread has finished
[2025-11-18 12:32:50] 2025-11-18 20:32:20,395 | INFO     | [payload] validate_pre thread has finished
[2025-11-18 12:32:50] 2025-11-18 20:32:20,472 | INFO     | [job] job monitor thread has finished
[2025-11-18 12:32:50] 2025-11-18 20:32:20,496 | INFO     | [data] copytool_in thread has finished
[2025-11-18 12:32:50] 2025-11-18 20:32:20,598 | INFO     | [payload] control thread has finished
[2025-11-18 12:32:50] 2025-11-18 20:32:20,722 | INFO     | [payload] execute_payloads thread has finished
[2025-11-18 12:32:50] 2025-11-18 20:32:20,787 | INFO     | [payload] validate_post thread has finished
[2025-11-18 12:32:50] 2025-11-18 20:32:20,874 | INFO     | [job] control thread has finished
[2025-11-18 12:32:50] 2025-11-18 20:32:20,888 | INFO     | [data] control thread has finished
[2025-11-18 12:32:50] 2025-11-18 20:32:20,993 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-18 12:32:50] 2025-11-18 20:32:21,398 | INFO     | [payload] failed_post thread has finished
[2025-11-18 12:32:50] 2025-11-18 20:32:21,577 | INFO     | [job] validate thread has finished
[2025-11-18 12:32:50] 2025-11-18 20:32:21,676 | INFO     | [job] create_data_payload thread has finished
[2025-11-18 12:32:50] 2025-11-18 20:32:21,863 | INFO     | [data] copytool_out thread has finished
[2025-11-18 12:32:50] 2025-11-18 20:32:22,169 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-18 12:32:50] 2025-11-18 20:32:22,193 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-18 12:32:50] 2025-11-18 20:32:23,175 | INFO     | [job] queue monitor thread has finished
[2025-11-18 12:32:50] 2025-11-18 20:32:23,907 | INFO     | [monitor] cgroup control has ended
[2025-11-18 12:32:50] 2025-11-18 20:32:26,201 | INFO     | [data] queue_monitor thread has finished
[2025-11-18 12:32:50] 2025-11-18 20:32:26,232 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139875558659904)>', '<ExcThread(monitor, started 139874787120896)>']
[2025-11-18 12:32:50] 2025-11-18 20:32:31,250 | INFO     | all workflow threads have been joined
[2025-11-18 12:32:50] 2025-11-18 20:32:31,250 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-18 12:32:50] 2025-11-18 20:32:31,251 | INFO     | traces error code: 0
[2025-11-18 12:32:50] 2025-11-18 20:32:31,251 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-18 12:32:50] 2025-11-18 20:32:50,255 | INFO     | PID=3599550 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-18 12:32:50] 2025-11-18 20:32:50,256 | INFO     | .. there are 21 such processes running
[2025-11-18 12:32:50] 2025-11-18 20:32:50,256 | INFO     | found 0 job(s) in 20 queues
[2025-11-18 12:32:50] 2025-11-18 20:32:50,256 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-18 12:32:50] 2025-11-18 20:32:50,256 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-18 12:32:50] 2025-11-18 20:32:50,256 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-18 12:32:50] 2025-11-18 20:32:50,257 | INFO     | [monitor] control thread has ended
[2025-11-18 12:32:50] 2025-11-18 20:32:50,364 [wrapper] ==== pilot stdout END ====
[2025-11-18 12:32:50] 2025-11-18 20:32:50,367 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-18 12:32:50] 2025-11-18 20:32:50,369 [wrapper] pilotpid: 3599550
[2025-11-18 12:32:50] 2025-11-18 20:32:50,371 [wrapper] Pilot exit status: 0
[2025-11-18 12:32:50] 2025-11-18 20:32:50,381 [wrapper] pandaids: 6891570635
[2025-11-18 12:32:50] 2025-11-18 20:32:50,420 [wrapper] cleanup supervisor_pilot 3599573 3599551
[2025-11-18 12:32:50] 2025-11-18 20:32:50,423 [wrapper] Test setup, not cleaning
[2025-11-18 12:32:50] 2025-11-18 20:32:50,425 [wrapper] apfmon messages muted
[2025-11-18 12:32:50] 2025-11-18 20:32:50,442 [wrapper] ==== wrapper stdout END ====
[2025-11-18 12:32:50] 2025-11-18 20:32:50,444 [wrapper] ==== wrapper stderr END ====
[2025-11-18 12:32:50]  *** Error codes and diagnostics ***
[2025-11-18 12:32:50]     "exeErrorCode": 65,
[2025-11-18 12:32:50]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-18 12:32:50]     "pilotErrorCode": 1305,
[2025-11-18 12:32:50]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-18 12:32:50]  *** Listing of results directory ***
[2025-11-18 12:32:50] total 401016
[2025-11-18 12:32:50] -rw-r--r--. 1 boinc boinc    598293 Nov  6 00:41 pilot3.tar.gz
[2025-11-18 12:32:50] -rw-r--r--. 1 boinc boinc      5112 Nov 18 07:39 queuedata.json
[2025-11-18 12:32:50] -rwx------. 1 boinc boinc     36292 Nov 18 07:40 runpilot2-wrapper.sh
[2025-11-18 12:32:50] -rw-r--r--. 1 boinc boinc       100 Nov 18 12:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-18 12:32:50] -rwxr-xr-x. 1 boinc boinc      7986 Nov 18 12:28 run_atlas
[2025-11-18 12:32:50] -rw-r--r--. 1 boinc boinc       105 Nov 18 12:28 job.xml
[2025-11-18 12:32:50] -rw-r--r--. 2 boinc boinc 406372745 Nov 18 12:28 EVNT.47493065._000243.pool.root.1
[2025-11-18 12:32:50] -rw-r--r--. 1 boinc boinc      6595 Nov 18 12:28 init_data.xml
[2025-11-18 12:32:50] -rw-r--r--. 2 boinc boinc    611271 Nov 18 12:28 input.tar.gz
[2025-11-18 12:32:50] -rw-r--r--. 2 boinc boinc     15120 Nov 18 12:28 start_atlas.sh
[2025-11-18 12:32:50] drwxrwx--x. 2 boinc boinc      4096 Nov 18 12:28 shared
[2025-11-18 12:32:50] -rw-r--r--. 1 boinc boinc         0 Nov 18 12:28 boinc_lockfile
[2025-11-18 12:32:50] -rw-r--r--. 1 boinc boinc      2773 Nov 18 12:28 pandaJob.out
[2025-11-18 12:32:50] -rw-------. 1 boinc boinc    992790 Nov 18 12:28 agis_schedconf.cvmfs.json
[2025-11-18 12:32:50] -rw-------. 1 boinc boinc   1525063 Nov 18 12:28 agis_ddmendpoints.agis.ALL.json
[2025-11-18 12:32:50] drwx------. 7 boinc boinc      4096 Nov 18 12:28 pilot3
[2025-11-18 12:32:50] -rw-r--r--. 1 boinc boinc       524 Nov 18 12:30 boinc_task_state.xml
[2025-11-18 12:32:50] -rw-------. 1 boinc boinc       995 Nov 18 12:30 memory_monitor_summary.json
[2025-11-18 12:32:50] -rw-------. 1 boinc boinc     48670 Nov 18 12:30 log.47493068._002427.job.log.tgz.1
[2025-11-18 12:32:50] -rw-------. 1 boinc boinc     10333 Nov 18 12:32 heartbeat.json
[2025-11-18 12:32:50] -rw-r--r--. 1 boinc boinc        23 Nov 18 12:32 wrapper_checkpoint.txt
[2025-11-18 12:32:50] -rw-r--r--. 1 boinc boinc      8192 Nov 18 12:32 boinc_mmap_file
[2025-11-18 12:32:50] -rw-------. 1 boinc boinc        95 Nov 18 12:32 pilot_heartbeat.json
[2025-11-18 12:32:50] -rw-------. 1 boinc boinc       823 Nov 18 12:32 pilotlog.txt
[2025-11-18 12:32:50] -rw-------. 1 boinc boinc     99976 Nov 18 12:32 log.47493068._002427.job.log.1
[2025-11-18 12:32:50] -rw-------. 1 boinc boinc       186 Nov 18 12:32 output.list
[2025-11-18 12:32:50] -rw-r--r--. 1 boinc boinc       620 Nov 18 12:32 runtime_log
[2025-11-18 12:32:50] -rw-------. 1 boinc boinc    174080 Nov 18 12:32 result.tar.gz
[2025-11-18 12:32:50] -rw-r--r--. 1 boinc boinc      8528 Nov 18 12:32 runtime_log.err
[2025-11-18 12:32:50] -rw-------. 1 boinc boinc       645 Nov 18 12:32 RNcLDmkzcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmndFKDme0lHen.diag
[2025-11-18 12:32:50] -rw-r--r--. 1 boinc boinc     22425 Nov 18 12:32 stderr.txt
[2025-11-18 12:32:50] No HITS result produced
[2025-11-18 12:32:50]  *** Contents of shared directory: ***
[2025-11-18 12:32:50] total 397644
[2025-11-18 12:32:50] -rw-r--r--. 2 boinc boinc 406372745 Nov 18 12:28 ATLAS.root_0
[2025-11-18 12:32:50] -rw-r--r--. 2 boinc boinc    611271 Nov 18 12:28 input.tar.gz
[2025-11-18 12:32:50] -rw-r--r--. 2 boinc boinc     15120 Nov 18 12:28 start_atlas.sh
[2025-11-18 12:32:50] -rw-------. 1 boinc boinc    174080 Nov 18 12:32 result.tar.gz
12:32:52 (3588974): run_atlas exited; CPU time 40.772692
12:32:52 (3588974): called boinc_finish(0)

</stderr_txt>
]]>

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