Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:26:50 (2094662): wrapper (7.7.26015): starting
12:26:50 (2094662): wrapper: running run_atlas (--nthreads 12)
[2025-11-18 12:26:50] Arguments: --nthreads 12
[2025-11-18 12:26:50] Threads: 12
[2025-11-18 12:26:50] Checking for CVMFS
[2025-11-18 12:26:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-18 12:26:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-18 12:26:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-18 12:26:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-18 12:26:51] 2.11.5.0 2081521 17301 244268 153013 1 436 37366619 45568001 13356 130560 0 103613244 99.786 61959519 16742 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-18 12:26:51] CVMFS is ok
[2025-11-18 12:26:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-18 12:26:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-18 12:26:51] Further information can be found at the LHC@home message board.
[2025-11-18 12:26:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-18 12:26:51] Checking for apptainer binary...
[2025-11-18 12:26:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-18 12:26:51] Running /usr/bin/apptainer --version
[2025-11-18 12:26:51] apptainer version 1.4.1-1.el9
[2025-11-18 12:26:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-18 12:26:51] wns0041.triumf.lcg
[2025-11-18 12:26:51] apptainer works
[2025-11-18 12:26:51] Set ATHENA_PROC_NUMBER=12
[2025-11-18 12:26:51] Set ATHENA_CORE_NUMBER=12
[2025-11-18 12:26:51] Starting ATLAS job with PandaID=6891592987
[2025-11-18 12:26:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-18 12:32:14]  *** The last 200 lines of the pilot log: ***
[2025-11-18 12:32:14] 2025-11-18 20:31:30,761 | INFO     | could have reported an average CPU frequency of 1270 MHz (4 samples)
[2025-11-18 12:32:14] 2025-11-18 20:31:30,761 | INFO     | ..............................
[2025-11-18 12:32:14] 2025-11-18 20:31:30,761 | INFO     | . Timing measurements:
[2025-11-18 12:32:14] 2025-11-18 20:31:30,761 | INFO     | . get job = 0 s
[2025-11-18 12:32:14] 2025-11-18 20:31:30,762 | INFO     | . initial setup = 4 s
[2025-11-18 12:32:14] 2025-11-18 20:31:30,762 | INFO     | . payload setup = 9 s
[2025-11-18 12:32:14] 2025-11-18 20:31:30,762 | INFO     | . stage-in = 0 s
[2025-11-18 12:32:14] 2025-11-18 20:31:30,762 | INFO     | . payload execution = 101 s
[2025-11-18 12:32:14] 2025-11-18 20:31:30,762 | INFO     | . stage-out = 0 s
[2025-11-18 12:32:14] 2025-11-18 20:31:30,762 | INFO     | . log creation = 0 s
[2025-11-18 12:32:14] 2025-11-18 20:31:30,762 | INFO     | ..............................
[2025-11-18 12:32:14] 2025-11-18 20:31:30,762 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 12:32:14] 2025-11-18 20:31:30,763 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891592987/pilotlog.txt
[2025-11-18 12:32:14] 2025-11-18 20:31:30,801 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-18 12:32:14] - Log from pilotlog.txt -
[2025-11-18 12:32:14] 2025-11-18 20:31:30,757 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891592987/memory_monitor_summary.json (trf name=prmon)
[2025-11-18 12:32:14] 2025-11-18 20:31:30,758 | INFO     | extracted standard info from prmon json
[2025-11-18 12:32:14] 2025-11-18 20:31:30,758 | INFO     | extracted standard memory fields from prmon json
[2025-11-18 12:32:14] 2025-11-18 20:31:30,758 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-18 12:32:14] 2025-11-18 20:31:30,759 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-18 12:32:14] 2025-11-18 20:31:30,759 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-18 12:32:14] 2025-11-18 20:31:30,760 | WARNING  | wrong length of table data, x=[1763497667.0, 1763497728.0], y=[1250.0, 371862.0] (must be same and length>=4)
[2025-11-18 12:32:14] 2025-11-18 20:31:30,761 | INFO     | could have reported an average CPU frequency of 1270 MHz (4 samples)
[2025-11-18 12:32:14] 2025-11-18 20:31:30,761 | INFO     | ..............................
[2025-11-18 12:32:14] 2025-11-18 20:31:30,761 | INFO     | . Timing measurements:
[2025-11-18 12:32:14] 2025-11-18 20:31:30,761 | INFO     | . get job = 0 s
[2025-11-18 12:32:14] 2025-11-18 20:31:30,762 | INFO     | . initial setup = 4 s
[2025-11-18 12:32:14] 2025-11-18 20:31:30,762 | INFO     | . payload setup = 9 s
[2025-11-18 12:32:14] 2025-11-18 20:31:30,762 | INFO     | . stage-in = 0 s
[2025-11-18 12:32:14] 2025-11-18 20:31:30,762 | INFO     | . payload execution = 101 s
[2025-11-18 12:32:14] 2025-11-18 20:31:30,762 | INFO     | . stage-out = 0 s
[2025-11-18 12:32:14] 2025-11-18 20:31:30,762 | INFO     | . log creation = 0 s
[2025-11-18 12:32:14] 2025-11-18 20:31:30,762 | INFO     | ..............................
[2025-11-18 12:32:14] 2025-11-18 20:31:30,762 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 12:32:14] 2025-11-18 20:31:30,763 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891592987/pilotlog.txt
[2025-11-18 12:32:14] 2025-11-18 20:31:30,802 | WARNING  | 
[2025-11-18 12:32:14] [begin log extracts]
[2025-11-18 12:32:14] - Log from pilotlog.txt -
[2025-11-18 12:32:14] 2025-11-18 20:31:30,757 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891592987/memory_monitor_summary.json (trf name=prmon)
[2025-11-18 12:32:14] 2025-11-18 20:31:30,758 | INFO     | extracted standard info from prmon json
[2025-11-18 12:32:14] 2025-11-18 20:31:30,758 | INFO     | extracted standard memory fields from prmon json
[2025-11-18 12:32:14] 2025-11-18 20:31:30,758 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-18 12:32:14] 2025-11-18 20:31:30,759 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-18 12:32:14] 2025-11-18 20:31:30,759 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-18 12:32:14] 2025-11-18 20:31:30,760 | WARNING  | wrong length of table data, x=[1763497667.0, 1763497728.0], y=[1250.0, 371862.0] (must be same and length>=4)
[2025-11-18 12:32:14] 2025-11-18 20:31:30,761 | INFO     | could have reported an average CPU frequency of 1270 MHz (4 samples)
[2025-11-18 12:32:14] 2025-11-18 20:31:30,761 | INFO     | ..............................
[2025-11-18 12:32:14] 2025-11-18 20:31:30,761 | INFO     | . Timing measurements:
[2025-11-18 12:32:14] 2025-11-18 20:31:30,761 | INFO     | . get job = 0 s
[2025-11-18 12:32:14] 2025-11-18 20:31:30,762 | INFO     | . initial setup = 4 s
[2025-11-18 12:32:14] 2025-11-18 20:31:30,762 | INFO     | . payload setup = 9 s
[2025-11-18 12:32:14] 2025-11-18 20:31:30,762 | INFO     | . stage-in = 0 s
[2025-11-18 12:32:14] 2025-11-18 20:31:30,762 | INFO     | . payload execution = 101 s
[2025-11-18 12:32:14] 2025-11-18 20:31:30,762 | INFO     | . stage-out = 0 s
[2025-11-18 12:32:14] 2025-11-18 20:31:30,762 | INFO     | . log creation = 0 s
[2025-11-18 12:32:14] 2025-11-18 20:31:30,762 | INFO     | ..............................
[2025-11-18 12:32:14] 2025-11-18 20:31:30,762 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 12:32:14] 2025-11-18 20:31:30,763 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891592987/pilotlog.txt
[2025-11-18 12:32:14] [end log extracts]
[2025-11-18 12:32:14] 2025-11-18 20:31:30,802 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-18 12:32:14] 2025-11-18 20:31:30,803 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-18 12:32:14] 2025-11-18 20:31:30,914 | INFO     | 
[2025-11-18 12:32:14] 2025-11-18 20:31:30,914 | INFO     | job summary report
[2025-11-18 12:32:14] 2025-11-18 20:31:30,915 | INFO     | --------------------------------------------------
[2025-11-18 12:32:14] 2025-11-18 20:31:30,915 | INFO     | PanDA job id: 6891592987
[2025-11-18 12:32:14] 2025-11-18 20:31:30,915 | INFO     | task id: 47493068
[2025-11-18 12:32:14] 2025-11-18 20:31:30,915 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-18 12:29:15,974 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-18 12:32:14] 2025-11-18 20:31:30,915 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-18 12:32:14] 2025-11-18 20:31:30,915 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-18 12:32:14] 2025-11-18 20:31:30,915 | INFO     | pilot state: failed 
[2025-11-18 12:32:14] 2025-11-18 20:31:30,915 | INFO     | transexitcode: 65
[2025-11-18 12:32:14] 2025-11-18 20:31:30,915 | INFO     | exeerrorcode: 65
[2025-11-18 12:32:14] 2025-11-18 20:31:30,915 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-18 12:32:14] 2025-11-18 20:31:30,916 | INFO     | exitcode: 65
[2025-11-18 12:32:14] 2025-11-18 20:31:30,916 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-18 12:32:14] 2025-11-18 20:31:30,916 | INFO     | cpuconsumptiontime: 81 s
[2025-11-18 12:32:14] 2025-11-18 20:31:30,916 | INFO     | nevents: 0
[2025-11-18 12:32:14] 2025-11-18 20:31:30,916 | INFO     | neventsw: 0
[2025-11-18 12:32:14] 2025-11-18 20:31:30,916 | INFO     | pid: 2110316
[2025-11-18 12:32:14] 2025-11-18 20:31:30,916 | INFO     | pgrp: 2110316
[2025-11-18 12:32:14] 2025-11-18 20:31:30,916 | INFO     | corecount: 12
[2025-11-18 12:32:14] 2025-11-18 20:31:30,916 | INFO     | event service: False
[2025-11-18 12:32:14] 2025-11-18 20:31:30,916 | INFO     | sizes: {0: 2297197, 7: 2297459, 11: 2297487, 115: 2322873, 117: 2327163, 118: 2327191, 243: 2327513}
[2025-11-18 12:32:14] 2025-11-18 20:31:30,916 | INFO     | --------------------------------------------------
[2025-11-18 12:32:14] 2025-11-18 20:31:30,917 | INFO     | 
[2025-11-18 12:32:14] 2025-11-18 20:31:30,917 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-18 12:32:14] 2025-11-18 20:31:30,943 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-18 12:32:14] 2025-11-18 20:31:30,950 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-18 12:32:14] 2025-11-18 20:31:30,950 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-18 12:32:14] 2025-11-18 20:31:30,950 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-18 12:32:14] 2025-11-18 20:31:30,950 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-18 12:32:14] 2025-11-18 20:31:30,951 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-18 12:32:14] 2025-11-18 20:31:30,951 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-18 12:32:14] 2025-11-18 20:31:30,951 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-18 12:32:14] 2025-11-18 20:31:30,951 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-18 12:32:14] 2025-11-18 20:31:30,951 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-18 12:32:14] 2025-11-18 20:31:30,951 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-18 12:32:14] 2025-11-18 20:31:30,951 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-18 12:32:14] 2025-11-18 20:31:30,951 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-18 12:32:14] 2025-11-18 20:31:30,951 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-18 12:32:14] 2025-11-18 20:31:30,951 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-18 12:32:14] 2025-11-18 20:31:30,952 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-18 12:32:14] 2025-11-18 20:31:30,952 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-18 12:32:14] 2025-11-18 20:31:30,973 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-18 12:32:14] 2025-11-18 20:31:30,973 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-18 12:32:14] 2025-11-18 20:31:30,973 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-18 12:32:14] 2025-11-18 20:31:30,974 | INFO     | job 6891592987 has completed (purged errors)
[2025-11-18 12:32:14] 2025-11-18 20:31:30,974 | INFO     | overall cleanup function is called
[2025-11-18 12:32:14] 2025-11-18 20:31:31,988 | INFO     | --- collectZombieJob: --- 10, [2110316]
[2025-11-18 12:32:14] 2025-11-18 20:31:31,988 | INFO     | zombie collector waiting for pid 2110316
[2025-11-18 12:32:14] 2025-11-18 20:31:31,988 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-18 12:32:14] 2025-11-18 20:31:31,989 | INFO     | collected zombie processes
[2025-11-18 12:32:14] 2025-11-18 20:31:31,989 | INFO     | will attempt to kill all subprocesses of pid=2110316
[2025-11-18 12:32:14] 2025-11-18 20:31:32,402 | INFO     | process IDs to be killed: [2110316] (in reverse order)
[2025-11-18 12:32:14] 2025-11-18 20:31:32,528 | WARNING  | found no corresponding commands to process id(s)
[2025-11-18 12:32:14] 2025-11-18 20:31:32,528 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-18 12:32:14] 2025-11-18 20:31:32,542 | INFO     | did not find any defunct processes belonging to 2110316
[2025-11-18 12:32:14] 2025-11-18 20:31:32,556 | INFO     | did not find any defunct processes belonging to 2110316
[2025-11-18 12:32:14] 2025-11-18 20:31:32,557 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-18 12:32:14] 2025-11-18 20:31:32,557 | INFO     | ready for new job
[2025-11-18 12:32:14] 2025-11-18 20:31:32,558 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-18 12:32:14] 2025-11-18 20:31:32,560 | INFO     | ***************************************
[2025-11-18 12:32:14] 2025-11-18 20:31:32,561 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-18 12:32:14] 2025-11-18 20:31:32,561 | INFO     | ***************************************
[2025-11-18 12:32:14] 2025-11-18 20:31:32,561 | INFO     | 
[2025-11-18 12:32:14] 2025-11-18 20:31:32,565 | INFO     | architecture information:
[2025-11-18 12:32:14] 2025-11-18 20:31:32,566 | INFO     | executing command: cat /etc/os-release
[2025-11-18 12:32:14] 2025-11-18 20:31:32,582 | INFO     | cat /etc/os-release:
[2025-11-18 12:32:14] NAME="CentOS Linux"
[2025-11-18 12:32:14] VERSION="7 (Core)"
[2025-11-18 12:32:14] ID="centos"
[2025-11-18 12:32:14] ID_LIKE="rhel fedora"
[2025-11-18 12:32:14] VERSION_ID="7"
[2025-11-18 12:32:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-18 12:32:14] ANSI_COLOR="0;31"
[2025-11-18 12:32:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-18 12:32:14] HOME_URL="https://www.centos.org/"
[2025-11-18 12:32:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-18 12:32:14] 
[2025-11-18 12:32:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-18 12:32:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-18 12:32:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-18 12:32:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-18 12:32:14] 
[2025-11-18 12:32:14] 2025-11-18 20:31:32,583 | INFO     | ***************************************
[2025-11-18 12:32:14] 2025-11-18 20:31:33,085 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-18 12:32:14] 2025-11-18 20:31:33,106 | INFO     | sufficient remaining disk space (1980409839616 B)
[2025-11-18 12:32:14] 2025-11-18 20:31:33,106 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-18 12:32:14] 2025-11-18 20:31:33,107 | INFO     | current server update state: UPDATING_FINAL
[2025-11-18 12:32:14] 2025-11-18 20:31:33,107 | INFO     | update_server=False
[2025-11-18 12:32:14] 2025-11-18 20:31:33,107 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-18 12:32:14] 2025-11-18 20:31:33,128 | INFO     | all job control threads have been joined
[2025-11-18 12:32:14] 2025-11-18 20:31:33,409 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-18 12:32:14] 2025-11-18 20:31:33,409 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-18 12:32:14] 2025-11-18 20:31:33,410 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-18 12:32:14] 2025-11-18 20:31:33,410 | INFO     | will abort loop
[2025-11-18 12:32:14] 2025-11-18 20:31:33,425 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-18 12:32:14] 2025-11-18 20:31:33,443 | INFO     | all payload control threads have been joined
[2025-11-18 12:32:14] 2025-11-18 20:31:33,559 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-18 12:32:14] 2025-11-18 20:31:33,803 | INFO     | all data control threads have been joined
[2025-11-18 12:32:14] 2025-11-18 20:31:34,112 | INFO     | [job] retrieve thread has finished
[2025-11-18 12:32:14] 2025-11-18 20:31:34,143 | INFO     | [job] control thread has finished
[2025-11-18 12:32:14] 2025-11-18 20:31:34,414 | INFO     | [job] job monitor thread has finished
[2025-11-18 12:32:14] 2025-11-18 20:31:34,449 | INFO     | [payload] control thread has finished
[2025-11-18 12:32:14] 2025-11-18 20:31:34,456 | INFO     | [job] validate thread has finished
[2025-11-18 12:32:14] 2025-11-18 20:31:34,552 | INFO     | [data] copytool_in thread has finished
[2025-11-18 12:32:14] 2025-11-18 20:31:34,666 | INFO     | [payload] failed_post thread has finished
[2025-11-18 12:32:14] 2025-11-18 20:31:34,747 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-18 12:32:14] 2025-11-18 20:31:34,778 | INFO     | [job] create_data_payload thread has finished
[2025-11-18 12:32:14] 2025-11-18 20:31:34,810 | INFO     | [data] control thread has finished
[2025-11-18 12:32:14] 2025-11-18 20:31:34,990 | INFO     | [payload] execute_payloads thread has finished
[2025-11-18 12:32:14] 2025-11-18 20:31:35,088 | INFO     | [payload] validate_pre thread has finished
[2025-11-18 12:32:14] 2025-11-18 20:31:35,497 | INFO     | [payload] validate_post thread has finished
[2025-11-18 12:32:14] 2025-11-18 20:31:35,565 | INFO     | [data] copytool_out thread has finished
[2025-11-18 12:32:14] 2025-11-18 20:31:35,930 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-18 12:32:14] 2025-11-18 20:31:36,936 | INFO     | [job] queue monitor thread has finished
[2025-11-18 12:32:14] 2025-11-18 20:31:37,443 | INFO     | [data] queue_monitor thread has finished
[2025-11-18 12:32:14] 2025-11-18 20:32:03,088 | INFO     | PID=2098331 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-18 12:32:14] 2025-11-18 20:32:03,088 | INFO     | .. there are 28 such processes running
[2025-11-18 12:32:14] 2025-11-18 20:32:03,089 | INFO     | found 0 job(s) in 20 queues
[2025-11-18 12:32:14] 2025-11-18 20:32:03,089 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-18 12:32:14] 2025-11-18 20:32:03,089 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-18 12:32:14] 2025-11-18 20:32:08,285 | INFO     | [monitor] cgroup control has ended
[2025-11-18 12:32:14] 2025-11-18 20:32:09,276 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140652485412672)>', '<ExcThread(monitor, started 140652092307200)>']
[2025-11-18 12:32:14] 2025-11-18 20:32:10,125 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-18 12:32:14] 2025-11-18 20:32:10,126 | INFO     | [monitor] control thread has ended
[2025-11-18 12:32:14] 2025-11-18 20:32:14,303 | INFO     | all workflow threads have been joined
[2025-11-18 12:32:14] 2025-11-18 20:32:14,303 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-18 12:32:14] 2025-11-18 20:32:14,304 | INFO     | traces error code: 0
[2025-11-18 12:32:14] 2025-11-18 20:32:14,304 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-18 12:32:14] 2025-11-18 20:32:14,494 [wrapper] ==== pilot stdout END ====
[2025-11-18 12:32:14] 2025-11-18 20:32:14,498 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-18 12:32:14] 2025-11-18 20:32:14,501 [wrapper] pilotpid: 2098331
[2025-11-18 12:32:14] 2025-11-18 20:32:14,505 [wrapper] Pilot exit status: 0
[2025-11-18 12:32:14] 2025-11-18 20:32:14,520 [wrapper] pandaids: 6891592987
[2025-11-18 12:32:14] 2025-11-18 20:32:14,606 [wrapper] cleanup supervisor_pilot 2098337 2098332
[2025-11-18 12:32:14] 2025-11-18 20:32:14,610 [wrapper] Test setup, not cleaning
[2025-11-18 12:32:14] 2025-11-18 20:32:14,613 [wrapper] apfmon messages muted
[2025-11-18 12:32:14] 2025-11-18 20:32:14,618 [wrapper] ==== wrapper stdout END ====
[2025-11-18 12:32:14] 2025-11-18 20:32:14,622 [wrapper] ==== wrapper stderr END ====
[2025-11-18 12:32:14]  *** Error codes and diagnostics ***
[2025-11-18 12:32:14]     "exeErrorCode": 65,
[2025-11-18 12:32:14]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-18 12:32:14]     "pilotErrorCode": 1305,
[2025-11-18 12:32:14]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-18 12:32:14]  *** Listing of results directory ***
[2025-11-18 12:32:14] total 404676
[2025-11-18 12:32:14] -rwx------. 1 boinc boinc     36292 Nov 18 10:34 runpilot2-wrapper.sh
[2025-11-18 12:32:14] -rw-r--r--. 1 boinc boinc      5112 Nov 18 10:34 queuedata.json
[2025-11-18 12:32:14] -rw-r--r--. 1 boinc boinc    576529 Nov 18 10:34 pilot3.tar.gz
[2025-11-18 12:32:14] -rw-r--r--. 1 boinc boinc       100 Nov 18 12:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-18 12:32:14] -rwxr-xr-x. 1 boinc boinc      7986 Nov 18 12:26 run_atlas
[2025-11-18 12:32:14] -rw-r--r--. 1 boinc boinc       105 Nov 18 12:26 job.xml
[2025-11-18 12:32:14] -rw-r--r--. 1 boinc boinc      6595 Nov 18 12:26 init_data.xml
[2025-11-18 12:32:14] -rw-r--r--. 2 boinc boinc 410163788 Nov 18 12:26 EVNT.47493065._000660.pool.root.1
[2025-11-18 12:32:14] -rw-r--r--. 2 boinc boinc     15120 Nov 18 12:26 start_atlas.sh
[2025-11-18 12:32:14] drwxrwx--x. 2 boinc boinc      4096 Nov 18 12:26 shared
[2025-11-18 12:32:14] -rw-r--r--. 2 boinc boinc    590081 Nov 18 12:26 input.tar.gz
[2025-11-18 12:32:14] -rw-r--r--. 1 boinc boinc         0 Nov 18 12:26 boinc_lockfile
[2025-11-18 12:32:14] -rw-r--r--. 1 boinc boinc      2773 Nov 18 12:26 pandaJob.out
[2025-11-18 12:32:14] -rw-------. 1 boinc boinc    992790 Nov 18 12:27 agis_schedconf.cvmfs.json
[2025-11-18 12:32:14] -rw-------. 1 boinc boinc   1525063 Nov 18 12:27 agis_ddmendpoints.agis.ALL.json
[2025-11-18 12:32:14] drwx------. 5 boinc boinc      4096 Nov 18 12:27 pilot3
[2025-11-18 12:32:14] -rw-r--r--. 1 boinc boinc       524 Nov 18 12:28 boinc_task_state.xml
[2025-11-18 12:32:14] -rw-------. 1 boinc boinc      1006 Nov 18 12:29 memory_monitor_summary.json
[2025-11-18 12:32:14] -rw-------. 1 boinc boinc     48855 Nov 18 12:29 log.47493068._006094.job.log.tgz.1
[2025-11-18 12:32:14] -rw-------. 1 boinc boinc        95 Nov 18 12:31 pilot_heartbeat.json
[2025-11-18 12:32:14] -rw-------. 1 boinc boinc     10338 Nov 18 12:31 heartbeat.json
[2025-11-18 12:32:14] -rw-r--r--. 1 boinc boinc        23 Nov 18 12:32 wrapper_checkpoint.txt
[2025-11-18 12:32:14] -rw-r--r--. 1 boinc boinc      8192 Nov 18 12:32 boinc_mmap_file
[2025-11-18 12:32:14] -rw-------. 1 boinc boinc      5009 Nov 18 12:32 pilotlog.txt
[2025-11-18 12:32:14] -rw-------. 1 boinc boinc     99332 Nov 18 12:32 log.47493068._006094.job.log.1
[2025-11-18 12:32:14] -rw-------. 1 boinc boinc       186 Nov 18 12:32 output.list
[2025-11-18 12:32:14] -rw-r--r--. 1 boinc boinc       620 Nov 18 12:32 runtime_log
[2025-11-18 12:32:14] -rw-------. 1 boinc boinc    174080 Nov 18 12:32 result.tar.gz
[2025-11-18 12:32:14] -rw-r--r--. 1 boinc boinc      8528 Nov 18 12:32 runtime_log.err
[2025-11-18 12:32:14] -rw-------. 1 boinc boinc       645 Nov 18 12:32 RTmKDmJiff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRGGKDmogSI1m.diag
[2025-11-18 12:32:14] -rw-r--r--. 1 boinc boinc     22431 Nov 18 12:32 stderr.txt
[2025-11-18 12:32:14] No HITS result produced
[2025-11-18 12:32:14]  *** Contents of shared directory: ***
[2025-11-18 12:32:14] total 401324
[2025-11-18 12:32:14] -rw-r--r--. 2 boinc boinc 410163788 Nov 18 12:26 ATLAS.root_0
[2025-11-18 12:32:14] -rw-r--r--. 2 boinc boinc     15120 Nov 18 12:26 start_atlas.sh
[2025-11-18 12:32:14] -rw-r--r--. 2 boinc boinc    590081 Nov 18 12:26 input.tar.gz
[2025-11-18 12:32:14] -rw-------. 1 boinc boinc    174080 Nov 18 12:32 result.tar.gz
12:32:16 (2094662): run_atlas exited; CPU time 77.476674
12:32:16 (2094662): called boinc_finish(0)

</stderr_txt>
]]>

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