Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:16:41 (2043768): wrapper (7.7.26015): starting
05:16:41 (2043768): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 05:16:42] Arguments: --nthreads 4
[2025-11-21 05:16:42] Threads: 4
[2025-11-21 05:16:42] Checking for CVMFS
[2025-11-21 05:16:42] No cvmfs_config command found, will try listing directly
[2025-11-21 05:16:42] CVMFS is ok
[2025-11-21 05:16:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 05:16:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 05:16:42] Further information can be found at the LHC@home message board.
[2025-11-21 05:16:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 05:16:42] Checking for apptainer binary...
[2025-11-21 05:16:42] which: no apptainer in ((null))
[2025-11-21 05:16:42] apptainer is not installed, using version from CVMFS
[2025-11-21 05:16:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 05:16:42] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot52/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut02.grid.cesnet.cz
[2025-11-21 05:16:42] apptainer works
[2025-11-21 05:16:42] Set ATHENA_PROC_NUMBER=4
[2025-11-21 05:16:42] Set ATHENA_CORE_NUMBER=4
[2025-11-21 05:16:42] Starting ATLAS job with PandaID=6891572661
[2025-11-21 05:16:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot52/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 22:50:45]  *** The last 200 lines of the pilot log: ***
[2025-11-21 22:50:45] 2025-11-21 21:49:55,626 | INFO     | time since job start (63182s) is within the limit (172800.0s)
[2025-11-21 22:50:45] 2025-11-21 21:49:56,840 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-21 22:50:45] 2025-11-21 21:49:56,865 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2762.330203125001
[2025-11-21 22:50:45] 2025-11-21 21:49:56,879 | INFO     | using path: /scratch/boinc/var/slot52/slots/1/PanDA_Pilot-6891572661/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 22:50:45] 2025-11-21 21:49:56,882 | INFO     | extracted standard info from prmon json
[2025-11-21 22:50:45] 2025-11-21 21:49:56,882 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 22:50:45] 2025-11-21 21:49:56,883 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 22:50:45] 2025-11-21 21:49:56,900 | INFO     | fitting pss+swap vs Time
[2025-11-21 22:50:45] 2025-11-21 21:49:56,901 | INFO     | sum of square deviations: 344792083335.0
[2025-11-21 22:50:45] 2025-11-21 21:49:56,922 | INFO     | sum of deviations: 968385505450.5001
[2025-11-21 22:50:45] 2025-11-21 21:49:56,922 | INFO     | mean x: 1763730208.5
[2025-11-21 22:50:45] 2025-11-21 21:49:56,922 | INFO     | mean y: 2285579.8774131276
[2025-11-21 22:50:45] 2025-11-21 21:49:56,922 | INFO     | intersect: -4951339668.464278
[2025-11-21 22:50:45] 2025-11-21 21:49:56,924 | INFO     | chi2: 4.9303499992507795
[2025-11-21 22:50:45] 2025-11-21 21:49:56,925 | INFO     | sum of square deviations: 339823971580.0
[2025-11-21 22:50:45] 2025-11-21 21:49:56,946 | INFO     | sum of deviations: 1237279392530.0002
[2025-11-21 22:50:45] 2025-11-21 21:49:56,946 | INFO     | mean x: 1763730056.0
[2025-11-21 22:50:45] 2025-11-21 21:49:56,946 | INFO     | mean y: 2293834.612027158
[2025-11-21 22:50:45] 2025-11-21 21:49:56,946 | INFO     | intersect: -6419345116.072923
[2025-11-21 22:50:45] 2025-11-21 21:49:56,948 | INFO     | chi2: 1.9512705558838999
[2025-11-21 22:50:45] 2025-11-21 21:49:56,948 | INFO     | current chi2=1.9512705558838999 (change=60.42328523978183 %)
[2025-11-21 22:50:45] 2025-11-21 21:49:56,949 | INFO     | sum of square deviations: 334903814212.5
[2025-11-21 22:50:45] 2025-11-21 21:49:56,969 | INFO     | sum of deviations: 1266803044616.5002
[2025-11-21 22:50:45] 2025-11-21 21:49:56,970 | INFO     | mean x: 1763729903.5
[2025-11-21 22:50:45] 2025-11-21 21:49:56,971 | INFO     | mean y: 2294746.1393762184
[2025-11-21 22:50:45] 2025-11-21 21:49:56,971 | INFO     | intersect: -6669168273.440568
[2025-11-21 22:50:45] 2025-11-21 21:49:56,973 | INFO     | chi2: 1.8051199904359265
[2025-11-21 22:50:45] 2025-11-21 21:49:56,973 | INFO     | current chi2=1.8051199904359265 (change=7.490020541091445 %)
[2025-11-21 22:50:45] 2025-11-21 21:49:56,973 | INFO     | right removable region: 1025
[2025-11-21 22:50:45] 2025-11-21 21:49:56,974 | INFO     | sum of square deviations: 339823971580.0
[2025-11-21 22:50:45] 2025-11-21 21:49:56,995 | INFO     | sum of deviations: 785765447885.0
[2025-11-21 22:50:45] 2025-11-21 21:49:56,996 | INFO     | mean x: 1763730361.0
[2025-11-21 22:50:45] 2025-11-21 21:49:56,996 | INFO     | mean y: 2291176.2211445197
[2025-11-21 22:50:45] 2025-11-21 21:49:56,996 | INFO     | intersect: -4075933119.1866903
[2025-11-21 22:50:45] 2025-11-21 21:49:56,997 | INFO     | chi2: 3.2287103823383507
[2025-11-21 22:50:45] 2025-11-21 21:49:56,997 | INFO     | current chi2=3.2287103823383507 (change=34.513566322289726 %)
[2025-11-21 22:50:45] 2025-11-21 21:49:56,999 | INFO     | sum of square deviations: 334903814212.5
[2025-11-21 22:50:45] 2025-11-21 21:49:57,019 | INFO     | sum of deviations: 759876453409.5
[2025-11-21 22:50:45] 2025-11-21 21:49:57,019 | INFO     | mean x: 1763730513.5
[2025-11-21 22:50:45] 2025-11-21 21:49:57,019 | INFO     | mean y: 2291978.999025341
[2025-11-21 22:50:45] 2025-11-21 21:49:57,019 | INFO     | intersect: -3999505643.1627645
[2025-11-21 22:50:45] 2025-11-21 21:49:57,020 | INFO     | chi2: 3.220514622641443
[2025-11-21 22:50:45] 2025-11-21 21:49:57,021 | INFO     | current chi2=3.220514622641443 (change=0.2538400390985861 %)
[2025-11-21 22:50:45] 2025-11-21 21:49:57,021 | INFO     | left removable region: 20
[2025-11-21 22:50:45] 2025-11-21 21:49:57,022 | INFO     | sum of square deviations: 314757566710.0
[2025-11-21 22:50:45] 2025-11-21 21:49:57,041 | INFO     | sum of deviations: 998637466671.0
[2025-11-21 22:50:45] 2025-11-21 21:49:57,042 | INFO     | mean x: 1763730483.0
[2025-11-21 22:50:45] 2025-11-21 21:49:57,042 | INFO     | mean y: 2302994.8199004973
[2025-11-21 22:50:45] 2025-11-21 21:49:57,042 | INFO     | intersect: -5593519084.514979
[2025-11-21 22:50:45] 2025-11-21 21:49:57,043 | INFO     | chi2: 0.06713163936697439
[2025-11-21 22:50:45] 2025-11-21 21:49:57,044 | INFO     | current memory leak: 3.17 B/s (using 1005 data points, chi2=0.07)
[2025-11-21 22:50:45] 2025-11-21 21:49:57,045 | INFO     | could have reported an average CPU frequency of 2633 MHz (38 samples)
[2025-11-21 22:50:45] 2025-11-21 21:49:57,045 | INFO     | ..............................
[2025-11-21 22:50:45] 2025-11-21 21:49:57,045 | INFO     | . Timing measurements:
[2025-11-21 22:50:45] 2025-11-21 21:49:57,045 | INFO     | . get job = 0 s
[2025-11-21 22:50:45] 2025-11-21 21:49:57,045 | INFO     | . initial setup = 1 s
[2025-11-21 22:50:45] 2025-11-21 21:49:57,045 | INFO     | . payload setup = 6 s
[2025-11-21 22:50:45] 2025-11-21 21:49:57,046 | INFO     | . stage-in = 0 s
[2025-11-21 22:50:45] 2025-11-21 21:49:57,046 | INFO     | . payload execution = 63148 s
[2025-11-21 22:50:45] 2025-11-21 21:49:57,046 | INFO     | . stage-out = 2 s
[2025-11-21 22:50:45] 2025-11-21 21:49:57,046 | INFO     | . log creation = 0 s
[2025-11-21 22:50:45] 2025-11-21 21:49:57,046 | INFO     | ..............................
[2025-11-21 22:50:45] 2025-11-21 21:49:57,170 | INFO     | 
[2025-11-21 22:50:45] 2025-11-21 21:49:57,170 | INFO     | job summary report
[2025-11-21 22:50:45] 2025-11-21 21:49:57,171 | INFO     | --------------------------------------------------
[2025-11-21 22:50:45] 2025-11-21 21:49:57,171 | INFO     | PanDA job id: 6891572661
[2025-11-21 22:50:45] 2025-11-21 21:49:57,171 | INFO     | task id: 47493068
[2025-11-21 22:50:45] 2025-11-21 21:49:57,171 | INFO     | errors: (none)
[2025-11-21 22:50:45] 2025-11-21 21:49:57,171 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 22:50:45] 2025-11-21 21:49:57,171 | INFO     | pilot state: finished 
[2025-11-21 22:50:45] 2025-11-21 21:49:57,171 | INFO     | transexitcode: 0
[2025-11-21 22:50:45] 2025-11-21 21:49:57,171 | INFO     | exeerrorcode: 0
[2025-11-21 22:50:45] 2025-11-21 21:49:57,171 | INFO     | exeerrordiag: 
[2025-11-21 22:50:45] 2025-11-21 21:49:57,171 | INFO     | exitcode: 0
[2025-11-21 22:50:45] 2025-11-21 21:49:57,172 | INFO     | exitmsg: OK
[2025-11-21 22:50:45] 2025-11-21 21:49:57,172 | INFO     | cpuconsumptiontime: 250399 s
[2025-11-21 22:50:45] 2025-11-21 21:49:57,172 | INFO     | nevents: 1000
[2025-11-21 22:50:45] 2025-11-21 21:49:57,172 | INFO     | neventsw: 0
[2025-11-21 22:50:45] 2025-11-21 21:49:57,172 | INFO     | pid: 2054522
[2025-11-21 22:50:45] 2025-11-21 21:49:57,172 | INFO     | pgrp: 2054522
[2025-11-21 22:50:45] 2025-11-21 21:49:57,172 | INFO     | corecount: 4
[2025-11-21 22:50:45] 2025-11-21 21:49:57,172 | INFO     | event service: False
[2025-11-21 22:50:45] 2025-11-21 21:49:57,172 | INFO     | sizes: {0: 2298807, 5: 2299069, 11: 2299125, 63159: 2352351, 63162: 2361423, 63168: 2361613}
[2025-11-21 22:50:45] 2025-11-21 21:49:57,172 | INFO     | --------------------------------------------------
[2025-11-21 22:50:45] 2025-11-21 21:49:57,172 | INFO     | 
[2025-11-21 22:50:45] 2025-11-21 21:49:57,172 | INFO     | executing command: ls -lF /scratch/boinc/var/slot52/slots/1
[2025-11-21 22:50:45] 2025-11-21 21:49:57,196 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 22:50:45] 2025-11-21 21:49:57,196 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 22:50:45] 2025-11-21 21:49:57,196 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 22:50:45] 2025-11-21 21:49:57,197 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 22:50:45] 2025-11-21 21:49:57,197 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 22:50:45] 2025-11-21 21:49:57,197 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 22:50:45] 2025-11-21 21:49:57,197 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 22:50:45] 2025-11-21 21:49:57,197 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 22:50:45] 2025-11-21 21:49:57,197 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 22:50:45] 2025-11-21 21:49:57,197 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 22:50:45] 2025-11-21 21:49:57,197 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 22:50:45] 2025-11-21 21:49:57,197 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 22:50:45] 2025-11-21 21:49:57,197 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 22:50:45] 2025-11-21 21:49:57,197 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 22:50:45] 2025-11-21 21:49:57,198 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 22:50:45] 2025-11-21 21:49:57,198 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 22:50:45] 2025-11-21 21:49:57,198 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 22:50:45] 2025-11-21 21:49:57,198 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 22:50:45] 2025-11-21 21:49:57,198 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 22:50:45] 2025-11-21 21:49:57,198 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 22:50:45] 2025-11-21 21:49:57,198 | INFO     | job 6891572661 has completed (purged errors)
[2025-11-21 22:50:45] 2025-11-21 21:49:57,198 | INFO     | overall cleanup function is called
[2025-11-21 22:50:45] 2025-11-21 21:49:57,419 | INFO     | PID=2047556 has CPU usage=16.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-21 22:50:45] 2025-11-21 21:49:57,420 | INFO     | .. there are 2 such processes running
[2025-11-21 22:50:45] 2025-11-21 21:49:58,216 | INFO     | --- collectZombieJob: --- 10, [2054522]
[2025-11-21 22:50:45] 2025-11-21 21:49:58,216 | INFO     | zombie collector waiting for pid 2054522
[2025-11-21 22:50:45] 2025-11-21 21:49:58,216 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 22:50:45] 2025-11-21 21:49:58,216 | INFO     | collected zombie processes
[2025-11-21 22:50:45] 2025-11-21 21:49:58,216 | INFO     | will attempt to kill all subprocesses of pid=2054522
[2025-11-21 22:50:45] 2025-11-21 21:49:58,574 | INFO     | process IDs to be killed: [2054522] (in reverse order)
[2025-11-21 22:50:45] 2025-11-21 21:49:58,679 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 22:50:45] 2025-11-21 21:49:58,679 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 22:50:45] 2025-11-21 21:49:58,692 | INFO     | did not find any defunct processes belonging to 2054522
[2025-11-21 22:50:45] 2025-11-21 21:49:58,704 | INFO     | did not find any defunct processes belonging to 2054522
[2025-11-21 22:50:45] 2025-11-21 21:49:58,706 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 22:50:45] 2025-11-21 21:49:58,706 | INFO     | ready for new job
[2025-11-21 22:50:45] 2025-11-21 21:49:58,706 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 22:50:45] 2025-11-21 21:49:58,711 | INFO     | ***************************************
[2025-11-21 22:50:45] 2025-11-21 21:49:58,712 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 22:50:45] 2025-11-21 21:49:58,712 | INFO     | ***************************************
[2025-11-21 22:50:45] 2025-11-21 21:49:58,712 | INFO     | 
[2025-11-21 22:50:45] 2025-11-21 21:49:58,716 | INFO     | architecture information:
[2025-11-21 22:50:45] 2025-11-21 21:49:58,716 | INFO     | executing command: cat /etc/os-release
[2025-11-21 22:50:45] 2025-11-21 21:49:58,732 | INFO     | cat /etc/os-release:
[2025-11-21 22:50:45] NAME="CentOS Linux"
[2025-11-21 22:50:45] VERSION="7 (Core)"
[2025-11-21 22:50:45] ID="centos"
[2025-11-21 22:50:45] ID_LIKE="rhel fedora"
[2025-11-21 22:50:45] VERSION_ID="7"
[2025-11-21 22:50:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 22:50:45] ANSI_COLOR="0;31"
[2025-11-21 22:50:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 22:50:45] HOME_URL="https://www.centos.org/"
[2025-11-21 22:50:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 22:50:45] 
[2025-11-21 22:50:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 22:50:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 22:50:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 22:50:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 22:50:45] 
[2025-11-21 22:50:45] 2025-11-21 21:49:58,732 | INFO     | ***************************************
[2025-11-21 22:50:45] 2025-11-21 21:49:59,235 | INFO     | executing command: df -mP /scratch/boinc/var/slot52/slots/1
[2025-11-21 22:50:45] 2025-11-21 21:49:59,253 | INFO     | sufficient remaining disk space (671701008384 B)
[2025-11-21 22:50:45] 2025-11-21 21:49:59,253 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 22:50:45] 2025-11-21 21:49:59,253 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 22:50:45] 2025-11-21 21:49:59,254 | INFO     | update_server=False
[2025-11-21 22:50:45] 2025-11-21 21:49:59,254 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 22:50:45] 2025-11-21 21:49:59,254 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 22:50:45] 2025-11-21 21:49:59,254 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 22:50:45] 2025-11-21 21:49:59,255 | INFO     | aborting loop
[2025-11-21 22:50:45] 2025-11-21 21:49:59,964 | INFO     | all data control threads have been joined
[2025-11-21 22:50:45] 2025-11-21 21:50:00,259 | INFO     | [job] retrieve thread has finished
[2025-11-21 22:50:45] 2025-11-21 21:50:00,260 | INFO     | [job] job monitor thread has finished
[2025-11-21 22:50:45] 2025-11-21 21:50:00,275 | INFO     | all payload control threads have been joined
[2025-11-21 22:50:45] 2025-11-21 21:50:00,381 | INFO     | [payload] validate_post thread has finished
[2025-11-21 22:50:45] 2025-11-21 21:50:00,417 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 22:50:45] 2025-11-21 21:50:00,713 | INFO     | [job] validate thread has finished
[2025-11-21 22:50:45] 2025-11-21 21:50:00,903 | INFO     | all job control threads have been joined
[2025-11-21 22:50:45] 2025-11-21 21:50:00,966 | INFO     | [data] control thread has finished
[2025-11-21 22:50:45] 2025-11-21 21:50:01,095 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 22:50:45] 2025-11-21 21:50:01,096 | INFO     | [data] copytool_in thread has finished
[2025-11-21 22:50:45] 2025-11-21 21:50:01,226 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 22:50:45] 2025-11-21 21:50:01,260 | INFO     | [data] copytool_out thread has finished
[2025-11-21 22:50:45] 2025-11-21 21:50:01,281 | INFO     | [payload] control thread has finished
[2025-11-21 22:50:45] 2025-11-21 21:50:01,284 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 22:50:45] 2025-11-21 21:50:01,287 | INFO     | [payload] failed_post thread has finished
[2025-11-21 22:50:45] 2025-11-21 21:50:01,289 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 22:50:45] 2025-11-21 21:50:01,908 | INFO     | [job] control thread has finished
[2025-11-21 22:50:45] 2025-11-21 21:50:02,159 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 22:50:45] 2025-11-21 21:50:03,165 | INFO     | [job] queue monitor thread has finished
[2025-11-21 22:50:45] 2025-11-21 21:50:05,290 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 22:50:45] 2025-11-21 21:50:29,961 | INFO     | PID=2047556 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 22:50:45] 2025-11-21 21:50:29,961 | INFO     | .. there are 2 such processes running
[2025-11-21 22:50:45] 2025-11-21 21:50:29,962 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 22:50:45] 2025-11-21 21:50:29,962 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 22:50:45] 2025-11-21 21:50:29,962 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 22:50:45] 2025-11-21 21:50:35,939 | INFO     | [monitor] cgroup control has ended
[2025-11-21 22:50:45] 2025-11-21 21:50:36,828 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23436649707328)>', '<ExcThread(monitor, started 23436407564032)>']
[2025-11-21 22:50:45] 2025-11-21 21:50:36,997 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 22:50:45] 2025-11-21 21:50:36,997 | INFO     | [monitor] control thread has ended
[2025-11-21 22:50:45] 2025-11-21 21:50:41,853 | INFO     | all workflow threads have been joined
[2025-11-21 22:50:45] 2025-11-21 21:50:41,853 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 22:50:45] 2025-11-21 21:50:41,854 | INFO     | traces error code: 0
[2025-11-21 22:50:45] 2025-11-21 21:50:41,854 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 22:50:45] 2025-11-21 21:50:42,064 [wrapper] ==== pilot stdout END ====
[2025-11-21 22:50:45] 2025-11-21 21:50:42,066 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 22:50:45] 2025-11-21 21:50:42,069 [wrapper] pilotpid: 2047556
[2025-11-21 22:50:45] 2025-11-21 21:50:42,071 [wrapper] Pilot exit status: 0
[2025-11-21 22:50:45] 2025-11-21 21:50:42,081 [wrapper] pandaids: 6891572661
[2025-11-21 22:50:45] 2025-11-21 21:50:42,157 [wrapper] cleanup supervisor_pilot 2859883 2047557
[2025-11-21 22:50:45] 2025-11-21 21:50:42,161 [wrapper] Test setup, not cleaning
[2025-11-21 22:50:45] 2025-11-21 21:50:42,164 [wrapper] apfmon messages muted
[2025-11-21 22:50:45] 2025-11-21 21:50:42,166 [wrapper] ==== wrapper stdout END ====
[2025-11-21 22:50:45] 2025-11-21 21:50:42,169 [wrapper] ==== wrapper stderr END ====
[2025-11-21 22:50:45]  *** Error codes and diagnostics ***
[2025-11-21 22:50:45]     "exeErrorCode": 0,
[2025-11-21 22:50:45]     "exeErrorDiag": "",
[2025-11-21 22:50:45]     "pilotErrorCode": 0,
[2025-11-21 22:50:45]     "pilotErrorDiag": "",
[2025-11-21 22:50:45]  *** Listing of results directory ***
[2025-11-21 22:50:45] total 1323164
[2025-11-21 22:50:45] -rw-r--r-- 1 boinc boinc    576529 Nov 18 17:24 pilot3.tar.gz
[2025-11-21 22:50:45] -rw-r--r-- 1 boinc boinc      5112 Nov 18 17:26 queuedata.json
[2025-11-21 22:50:45] -rwx------ 1 boinc boinc     36292 Nov 18 17:26 runpilot2-wrapper.sh
[2025-11-21 22:50:45] -rw-r--r-- 1 boinc boinc       100 Nov 21 04:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 22:50:45] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 04:00 run_atlas
[2025-11-21 22:50:45] -rw-r--r-- 1 boinc boinc       105 Nov 21 04:00 job.xml
[2025-11-21 22:50:45] -rw-r--r-- 2 boinc boinc 410128339 Nov 21 05:16 EVNT.47493065._000345.pool.root.1
[2025-11-21 22:50:45] -rw-r--r-- 1 boinc boinc      6633 Nov 21 05:16 init_data.xml
[2025-11-21 22:50:45] -rw-r--r-- 2 boinc boinc     15120 Nov 21 05:16 start_atlas.sh
[2025-11-21 22:50:45] drwxrwx--x 2 boinc boinc      4096 Nov 21 05:16 shared
[2025-11-21 22:50:45] -rw-r--r-- 2 boinc boinc    590095 Nov 21 05:16 input.tar.gz
[2025-11-21 22:50:45] -rw-r--r-- 1 boinc boinc         0 Nov 21 05:16 boinc_lockfile
[2025-11-21 22:50:45] -rw-r--r-- 1 boinc boinc      2773 Nov 21 05:16 pandaJob.out
[2025-11-21 22:50:45] -rw------- 1 boinc boinc    989817 Nov 21 05:16 agis_schedconf.cvmfs.json
[2025-11-21 22:50:45] drwx------ 5 boinc boinc      4096 Nov 21 05:16 pilot3
[2025-11-21 22:50:45] -rw-r--r-- 1 boinc boinc       530 Nov 21 22:41 boinc_task_state.xml
[2025-11-21 22:50:45] -rw------- 1 boinc boinc 919631944 Nov 21 22:49 HITS.47493068._003442.pool.root.1
[2025-11-21 22:50:45] -rw------- 1 boinc boinc      1045 Nov 21 22:49 memory_monitor_summary.json
[2025-11-21 22:50:45] -rw------- 1 boinc boinc   1526164 Nov 21 22:49 agis_ddmendpoints.agis.ALL.json
[2025-11-21 22:50:45] -rw------- 1 boinc boinc   1764867 Nov 21 22:49 log.47493068._003442.job.log.tgz.1
[2025-11-21 22:50:45] -rw------- 1 boinc boinc      8626 Nov 21 22:49 heartbeat.json
[2025-11-21 22:50:45] -rw------- 1 boinc boinc        95 Nov 21 22:50 pilot_heartbeat.json
[2025-11-21 22:50:45] -rw-r--r-- 1 boinc boinc        27 Nov 21 22:50 wrapper_checkpoint.txt
[2025-11-21 22:50:45] -rw------- 1 boinc boinc      4833 Nov 21 22:50 pilotlog.txt
[2025-11-21 22:50:45] -rw------- 1 boinc boinc   8853400 Nov 21 22:50 log.47493068._003442.job.log.1
[2025-11-21 22:50:45] -rw------- 1 boinc boinc       353 Nov 21 22:50 output.list
[2025-11-21 22:50:45] -rw-r--r-- 1 boinc boinc       620 Nov 21 22:50 runtime_log
[2025-11-21 22:50:45] -rw------- 1 boinc boinc  10639360 Nov 21 22:50 result.tar.gz
[2025-11-21 22:50:45] -rw-r--r-- 1 boinc boinc      9070 Nov 21 22:50 runtime_log.err
[2025-11-21 22:50:45] -rw------- 1 boinc boinc       671 Nov 21 22:50 L2KKDmmidf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmnFKDmIrp9Um.diag
[2025-11-21 22:50:45] -rw-r--r-- 1 boinc boinc      8192 Nov 21 22:50 boinc_mmap_file
[2025-11-21 22:50:45] -rw-r--r-- 1 boinc boinc     21098 Nov 21 22:50 stderr.txt
[2025-11-21 22:50:45] HITS file was successfully produced:
[2025-11-21 22:50:45] -rw------- 1 boinc boinc 919631944 Nov 21 22:49 shared/HITS.pool.root.1
[2025-11-21 22:50:45]  *** Contents of shared directory: ***
[2025-11-21 22:50:45] total 1309592
[2025-11-21 22:50:45] -rw-r--r-- 2 boinc boinc 410128339 Nov 21 05:16 ATLAS.root_0
[2025-11-21 22:50:45] -rw-r--r-- 2 boinc boinc     15120 Nov 21 05:16 start_atlas.sh
[2025-11-21 22:50:45] -rw-r--r-- 2 boinc boinc    590095 Nov 21 05:16 input.tar.gz
[2025-11-21 22:50:45] -rw------- 1 boinc boinc 919631944 Nov 21 22:49 HITS.pool.root.1
[2025-11-21 22:50:45] -rw------- 1 boinc boinc  10639360 Nov 21 22:50 result.tar.gz
22:50:47 (2043768): run_atlas exited; CPU time 252719.136634
22:50:47 (2043768): called boinc_finish(0)

</stderr_txt>
]]>

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