Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:12:49 (31311): wrapper (7.7.26015): starting
22:12:49 (31311): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 22:12:49] Arguments: --nthreads 8
[2025-11-21 22:12:49] Threads: 8
[2025-11-21 22:12:49] Checking for CVMFS
[2025-11-21 22:12:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 22:12:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 22:12:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 22:12:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 22:12:50] 2.11.2.0 2602 73140 98412 153143 1 235 13540500 25165824 3998 130560 2 21330849 99.872 13202316 2438 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-21 22:12:50] CVMFS is ok
[2025-11-21 22:12:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 22:12:51] Checking for apptainer binary...
[2025-11-21 22:12:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 22:12:51] Running /usr/bin/apptainer --version
[2025-11-21 22:12:51] apptainer version 1.3.2-1.el7
[2025-11-21 22:12:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 22:12:52] cg-vwn253.simple-grid.lan
[2025-11-21 22:12:52] apptainer works
[2025-11-21 22:12:52] Set ATHENA_PROC_NUMBER=8
[2025-11-21 22:12:52] Set ATHENA_CORE_NUMBER=8
[2025-11-21 22:12:53] Starting ATLAS job with PandaID=6891572612
[2025-11-21 22:12:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 23:35:14]  *** The last 200 lines of the pilot log: ***
[2025-11-22 23:35:14] 2025-11-22 22:34:17,905 | INFO     | PID=4911 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-22 23:35:14] 2025-11-22 22:34:17,905 | INFO     | .. there are 9 such processes running
[2025-11-22 23:35:14] 2025-11-22 22:34:18,905 | INFO     | time since job start (91253s) is within the limit (172800.0s)
[2025-11-22 23:35:14] 2025-11-22 22:34:20,402 | INFO     | monitor loop #6122: job 0:6891572612 is in state 'finished'
[2025-11-22 23:35:14] 2025-11-22 22:34:20,403 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:35:14] 2025-11-22 22:34:20,920 | INFO     | time since job start (91255s) is within the limit (172800.0s)
[2025-11-22 23:35:14] 2025-11-22 22:34:22,907 | INFO     | monitor loop #6123: job 0:6891572612 is in state 'finished'
[2025-11-22 23:35:14] 2025-11-22 22:34:22,908 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:35:14] 2025-11-22 22:34:22,926 | INFO     | time since job start (91257s) is within the limit (172800.0s)
[2025-11-22 23:35:14] 2025-11-22 22:34:24,937 | INFO     | time since job start (91259s) is within the limit (172800.0s)
[2025-11-22 23:35:14] 2025-11-22 22:34:25,412 | INFO     | monitor loop #6124: job 0:6891572612 is in state 'finished'
[2025-11-22 23:35:14] 2025-11-22 22:34:25,413 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:35:14] 2025-11-22 22:34:26,945 | INFO     | time since job start (91261s) is within the limit (172800.0s)
[2025-11-22 23:35:14] 2025-11-22 22:34:27,921 | INFO     | monitor loop #6125: job 0:6891572612 is in state 'finished'
[2025-11-22 23:35:14] 2025-11-22 22:34:27,922 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 23:35:14] 2025-11-22 22:34:28,951 | INFO     | time since job start (91263s) is within the limit (172800.0s)
[2025-11-22 23:35:14] 2025-11-22 22:34:29,647 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 23:35:14] 2025-11-22 22:34:29,648 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-22 23:35:14] 2025-11-22 22:34:29,650 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6891572612/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 23:35:14] 2025-11-22 22:34:29,650 | INFO     | extracted standard info from prmon json
[2025-11-22 23:35:14] 2025-11-22 22:34:29,650 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 23:35:14] 2025-11-22 22:34:29,650 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 23:35:14] 2025-11-22 22:34:29,693 | INFO     | fitting pss+swap vs Time
[2025-11-22 23:35:14] 2025-11-22 22:34:29,696 | INFO     | sum of square deviations: 1021615643886.4989
[2025-11-22 23:35:14] 2025-11-22 22:34:29,768 | INFO     | sum of deviations: 3427213139976.2817
[2025-11-22 23:35:14] 2025-11-22 22:34:29,769 | INFO     | mean x: 1763805357.625672
[2025-11-22 23:35:14] 2025-11-22 22:34:29,769 | INFO     | mean y: 2851721.0866935486
[2025-11-22 23:35:14] 2025-11-22 22:34:29,769 | INFO     | intersect: -5914184626.378302
[2025-11-22 23:35:14] 2025-11-22 22:34:29,771 | INFO     | chi2: 17.49895479214058
[2025-11-22 23:35:14] 2025-11-22 22:34:29,773 | INFO     | sum of square deviations: 1011352185565.1425
[2025-11-22 23:35:14] 2025-11-22 22:34:29,834 | INFO     | sum of deviations: 3921761179231.3984
[2025-11-22 23:35:14] 2025-11-22 22:34:29,835 | INFO     | mean x: 1763805205.1294672
[2025-11-22 23:35:14] 2025-11-22 22:34:29,835 | INFO     | mean y: 2859068.279163857
[2025-11-22 23:35:14] 2025-11-22 22:34:29,835 | INFO     | intersect: -6836719547.292504
[2025-11-22 23:35:14] 2025-11-22 22:34:29,837 | INFO     | chi2: 14.293549872088532
[2025-11-22 23:35:14] 2025-11-22 22:34:29,837 | INFO     | current chi2=14.293549872088532 (change=18.31769358871487 %)
[2025-11-22 23:35:14] 2025-11-22 22:34:29,837 | INFO     | right removable region: 1482
[2025-11-22 23:35:14] 2025-11-22 22:34:29,839 | INFO     | sum of square deviations: 1011351163815.1432
[2025-11-22 23:35:14] 2025-11-22 22:34:29,897 | INFO     | sum of deviations: 2861040837047.8325
[2025-11-22 23:35:14] 2025-11-22 22:34:29,898 | INFO     | mean x: 1763805510.1294672
[2025-11-22 23:35:14] 2025-11-22 22:34:29,898 | INFO     | mean y: 2860131.157113958
[2025-11-22 23:35:14] 2025-11-22 22:34:29,898 | INFO     | intersect: -4986820776.564436
[2025-11-22 23:35:14] 2025-11-22 22:34:29,900 | INFO     | chi2: 13.690905192951977
[2025-11-22 23:35:14] 2025-11-22 22:34:29,900 | INFO     | current chi2=13.690905192951977 (change=21.76158315980642 %)
[2025-11-22 23:35:14] 2025-11-22 22:34:29,901 | INFO     | left removable region: 10
[2025-11-22 23:35:14] 2025-11-22 22:34:29,903 | INFO     | sum of square deviations: 989013009002.0046
[2025-11-22 23:35:14] 2025-11-22 22:34:29,964 | INFO     | sum of deviations: 3009708155395.7646
[2025-11-22 23:35:14] 2025-11-22 22:34:29,964 | INFO     | mean x: 1763805479.6379075
[2025-11-22 23:35:14] 2025-11-22 22:34:29,964 | INFO     | mean y: 2876220.1440217393
[2025-11-22 23:35:14] 2025-11-22 22:34:29,964 | INFO     | intersect: -5364636328.507589
[2025-11-22 23:35:14] 2025-11-22 22:34:29,966 | INFO     | chi2: 7.1674215664784935
[2025-11-22 23:35:14] 2025-11-22 22:34:29,969 | INFO     | current memory leak: 3.04 B/s (using 1472 data points, chi2=7.17)
[2025-11-22 23:35:14] 2025-11-22 22:34:29,971 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-22 23:35:14] 2025-11-22 22:34:29,972 | INFO     | ..............................
[2025-11-22 23:35:14] 2025-11-22 22:34:29,972 | INFO     | . Timing measurements:
[2025-11-22 23:35:14] 2025-11-22 22:34:29,972 | INFO     | . get job = 0 s
[2025-11-22 23:35:14] 2025-11-22 22:34:29,972 | INFO     | . initial setup = 2 s
[2025-11-22 23:35:14] 2025-11-22 22:34:29,972 | INFO     | . payload setup = 166 s
[2025-11-22 23:35:14] 2025-11-22 22:34:29,972 | INFO     | . stage-in = 0 s
[2025-11-22 23:35:14] 2025-11-22 22:34:29,972 | INFO     | . payload execution = 90924 s
[2025-11-22 23:35:14] 2025-11-22 22:34:29,972 | INFO     | . stage-out = 6 s
[2025-11-22 23:35:14] 2025-11-22 22:34:29,973 | INFO     | . log creation = 2 s
[2025-11-22 23:35:14] 2025-11-22 22:34:29,973 | INFO     | ..............................
[2025-11-22 23:35:14] 2025-11-22 22:34:30,105 | INFO     | 
[2025-11-22 23:35:14] 2025-11-22 22:34:30,105 | INFO     | job summary report
[2025-11-22 23:35:14] 2025-11-22 22:34:30,105 | INFO     | --------------------------------------------------
[2025-11-22 23:35:14] 2025-11-22 22:34:30,105 | INFO     | PanDA job id: 6891572612
[2025-11-22 23:35:14] 2025-11-22 22:34:30,105 | INFO     | task id: 47493068
[2025-11-22 23:35:14] 2025-11-22 22:34:30,106 | INFO     | errors: (none)
[2025-11-22 23:35:14] 2025-11-22 22:34:30,106 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 23:35:14] 2025-11-22 22:34:30,106 | INFO     | pilot state: finished 
[2025-11-22 23:35:14] 2025-11-22 22:34:30,106 | INFO     | transexitcode: 0
[2025-11-22 23:35:14] 2025-11-22 22:34:30,106 | INFO     | exeerrorcode: 0
[2025-11-22 23:35:14] 2025-11-22 22:34:30,106 | INFO     | exeerrordiag: 
[2025-11-22 23:35:14] 2025-11-22 22:34:30,106 | INFO     | exitcode: 0
[2025-11-22 23:35:14] 2025-11-22 22:34:30,106 | INFO     | exitmsg: OK
[2025-11-22 23:35:14] 2025-11-22 22:34:30,106 | INFO     | cpuconsumptiontime: 338505 s
[2025-11-22 23:35:14] 2025-11-22 22:34:30,106 | INFO     | nevents: 1000
[2025-11-22 23:35:14] 2025-11-22 22:34:30,106 | INFO     | neventsw: 0
[2025-11-22 23:35:14] 2025-11-22 22:34:30,106 | INFO     | pid: 16989
[2025-11-22 23:35:14] 2025-11-22 22:34:30,107 | INFO     | pgrp: 16989
[2025-11-22 23:35:14] 2025-11-22 22:34:30,107 | INFO     | corecount: 8
[2025-11-22 23:35:14] 2025-11-22 22:34:30,107 | INFO     | event service: False
[2025-11-22 23:35:14] 2025-11-22 22:34:30,107 | INFO     | sizes: {0: 2298745, 1: 2298773, 12: 2298773, 14: 2299063, 23: 2299091, 91093: 2363041, 91094: 2363168, 91100: 2372218, 91103: 2372274, 91201: 2372520}
[2025-11-22 23:35:14] 2025-11-22 22:34:30,107 | INFO     | --------------------------------------------------
[2025-11-22 23:35:14] 2025-11-22 22:34:30,107 | INFO     | 
[2025-11-22 23:35:14] 2025-11-22 22:34:30,107 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-22 23:35:14] 2025-11-22 22:34:30,558 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 23:35:14] 2025-11-22 22:34:30,559 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 23:35:14] 2025-11-22 22:34:30,559 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 23:35:14] 2025-11-22 22:34:30,559 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 23:35:14] 2025-11-22 22:34:30,559 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 23:35:14] 2025-11-22 22:34:30,559 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 23:35:14] 2025-11-22 22:34:30,559 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 23:35:14] 2025-11-22 22:34:30,559 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 23:35:14] 2025-11-22 22:34:30,559 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 23:35:14] 2025-11-22 22:34:30,559 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 23:35:14] 2025-11-22 22:34:30,559 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 23:35:14] 2025-11-22 22:34:30,559 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 23:35:14] 2025-11-22 22:34:30,560 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 23:35:14] 2025-11-22 22:34:30,560 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 23:35:14] 2025-11-22 22:34:30,560 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 23:35:14] 2025-11-22 22:34:30,560 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 23:35:14] 2025-11-22 22:34:30,560 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 23:35:14] 2025-11-22 22:34:30,560 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 23:35:14] 2025-11-22 22:34:30,560 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 23:35:14] 2025-11-22 22:34:30,560 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 23:35:14] 2025-11-22 22:34:30,560 | INFO     | job 6891572612 has completed (purged errors)
[2025-11-22 23:35:14] 2025-11-22 22:34:30,561 | INFO     | overall cleanup function is called
[2025-11-22 23:35:14] 2025-11-22 22:34:31,584 | INFO     | --- collectZombieJob: --- 10, [16989]
[2025-11-22 23:35:14] 2025-11-22 22:34:31,585 | INFO     | zombie collector waiting for pid 16989
[2025-11-22 23:35:14] 2025-11-22 22:34:31,585 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 23:35:14] 2025-11-22 22:34:31,585 | INFO     | collected zombie processes
[2025-11-22 23:35:14] 2025-11-22 22:34:31,585 | INFO     | will attempt to kill all subprocesses of pid=16989
[2025-11-22 23:35:14] 2025-11-22 22:34:31,701 | INFO     | process IDs to be killed: [16989] (in reverse order)
[2025-11-22 23:35:14] 2025-11-22 22:34:32,321 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 23:35:14] 2025-11-22 22:34:32,322 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 23:35:14] 2025-11-22 22:34:32,325 | INFO     | did not find any defunct processes belonging to 16989
[2025-11-22 23:35:14] 2025-11-22 22:34:32,329 | INFO     | did not find any defunct processes belonging to 16989
[2025-11-22 23:35:14] 2025-11-22 22:34:32,335 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 23:35:14] 2025-11-22 22:34:32,335 | INFO     | ready for new job
[2025-11-22 23:35:14] 2025-11-22 22:34:32,335 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 23:35:14] 2025-11-22 22:34:32,342 | INFO     | ***************************************
[2025-11-22 23:35:14] 2025-11-22 22:34:32,343 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 23:35:14] 2025-11-22 22:34:32,343 | INFO     | ***************************************
[2025-11-22 23:35:14] 2025-11-22 22:34:32,343 | INFO     | 
[2025-11-22 23:35:14] 2025-11-22 22:34:32,344 | INFO     | pilot is running in a VM
[2025-11-22 23:35:14] 2025-11-22 22:34:32,344 | INFO     | architecture information:
[2025-11-22 23:35:14] 2025-11-22 22:34:32,346 | INFO     | executing command: cat /etc/os-release
[2025-11-22 23:35:14] 2025-11-22 22:34:32,491 | INFO     | cat /etc/os-release:
[2025-11-22 23:35:14] NAME="CentOS Linux"
[2025-11-22 23:35:14] VERSION="7 (Core)"
[2025-11-22 23:35:14] ID="centos"
[2025-11-22 23:35:14] ID_LIKE="rhel fedora"
[2025-11-22 23:35:14] VERSION_ID="7"
[2025-11-22 23:35:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 23:35:14] ANSI_COLOR="0;31"
[2025-11-22 23:35:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 23:35:14] HOME_URL="https://www.centos.org/"
[2025-11-22 23:35:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 23:35:14] 
[2025-11-22 23:35:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 23:35:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 23:35:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 23:35:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 23:35:14] 
[2025-11-22 23:35:14] 2025-11-22 22:34:32,491 | INFO     | ***************************************
[2025-11-22 23:35:14] 2025-11-22 22:34:32,995 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-22 23:35:14] 2025-11-22 22:34:33,210 | INFO     | sufficient remaining disk space (495197356032 B)
[2025-11-22 23:35:14] 2025-11-22 22:34:33,211 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 23:35:14] 2025-11-22 22:34:33,211 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 23:35:14] 2025-11-22 22:34:33,211 | INFO     | update_server=False
[2025-11-22 23:35:14] 2025-11-22 22:34:33,211 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 23:35:14] 2025-11-22 22:34:33,216 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 23:35:14] 2025-11-22 22:34:33,469 | INFO     | all job control threads have been joined
[2025-11-22 23:35:14] 2025-11-22 22:34:33,614 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 23:35:14] 2025-11-22 22:34:33,687 | INFO     | all data control threads have been joined
[2025-11-22 23:35:14] 2025-11-22 22:34:33,773 | INFO     | all payload control threads have been joined
[2025-11-22 23:35:14] 2025-11-22 22:34:33,947 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 23:35:14] 2025-11-22 22:34:33,948 | INFO     | aborting loop
[2025-11-22 23:35:14] 2025-11-22 22:34:34,220 | INFO     | [job] retrieve thread has finished
[2025-11-22 23:35:14] 2025-11-22 22:34:34,407 | INFO     | [data] copytool_in thread has finished
[2025-11-22 23:35:14] 2025-11-22 22:34:34,470 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 23:35:14] 2025-11-22 22:34:34,474 | INFO     | [job] control thread has finished
[2025-11-22 23:35:14] 2025-11-22 22:34:34,693 | INFO     | [data] control thread has finished
[2025-11-22 23:35:14] 2025-11-22 22:34:34,778 | INFO     | [payload] control thread has finished
[2025-11-22 23:35:14] 2025-11-22 22:34:34,953 | INFO     | [job] job monitor thread has finished
[2025-11-22 23:35:14] 2025-11-22 22:34:35,032 | INFO     | [payload] validate_post thread has finished
[2025-11-22 23:35:14] 2025-11-22 22:34:35,124 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 23:35:14] 2025-11-22 22:34:35,140 | INFO     | [payload] failed_post thread has finished
[2025-11-22 23:35:14] 2025-11-22 22:34:35,163 | INFO     | [job] validate thread has finished
[2025-11-22 23:35:14] 2025-11-22 22:34:35,223 | INFO     | [data] copytool_out thread has finished
[2025-11-22 23:35:14] 2025-11-22 22:34:35,250 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 23:35:14] 2025-11-22 22:34:35,467 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 23:35:14] 2025-11-22 22:34:35,667 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 23:35:14] 2025-11-22 22:34:36,130 | INFO     | [job] queue monitor thread has finished
[2025-11-22 23:35:14] 2025-11-22 22:34:37,623 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 23:35:14] 2025-11-22 22:35:02,168 | INFO     | PID=4911 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-22 23:35:14] 2025-11-22 22:35:02,168 | INFO     | .. there are 9 such processes running
[2025-11-22 23:35:14] 2025-11-22 22:35:02,170 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 23:35:14] 2025-11-22 22:35:02,170 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 23:35:14] 2025-11-22 22:35:02,170 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 23:35:14] 2025-11-22 22:35:04,354 | INFO     | [monitor] cgroup control has ended
[2025-11-22 23:35:14] 2025-11-22 22:35:05,487 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140444669646656)>', '<ExcThread(monitor, started 140443878680320)>']
[2025-11-22 23:35:14] 2025-11-22 22:35:06,192 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 23:35:14] 2025-11-22 22:35:06,193 | INFO     | [monitor] control thread has ended
[2025-11-22 23:35:14] 2025-11-22 22:35:10,513 | INFO     | all workflow threads have been joined
[2025-11-22 23:35:14] 2025-11-22 22:35:10,514 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 23:35:14] 2025-11-22 22:35:10,514 | INFO     | traces error code: 0
[2025-11-22 23:35:14] 2025-11-22 22:35:10,514 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 23:35:14] 2025-11-22 22:35:10,803 [wrapper] ==== pilot stdout END ====
[2025-11-22 23:35:14] 2025-11-22 22:35:10,865 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 23:35:14] 2025-11-22 22:35:10,885 [wrapper] pilotpid: 4911
[2025-11-22 23:35:14] 2025-11-22 22:35:10,902 [wrapper] Pilot exit status: 0
[2025-11-22 23:35:14] 2025-11-22 22:35:11,307 [wrapper] pandaids: 6891572612
[2025-11-22 23:35:14] 2025-11-22 22:35:12,238 [wrapper] cleanup supervisor_pilot 21156 4912
[2025-11-22 23:35:14] 2025-11-22 22:35:12,342 [wrapper] Test setup, not cleaning
[2025-11-22 23:35:14] 2025-11-22 22:35:12,377 [wrapper] apfmon messages muted
[2025-11-22 23:35:14] 2025-11-22 22:35:12,409 [wrapper] ==== wrapper stdout END ====
[2025-11-22 23:35:14] 2025-11-22 22:35:12,486 [wrapper] ==== wrapper stderr END ====
[2025-11-22 23:35:14]  *** Error codes and diagnostics ***
[2025-11-22 23:35:14]     "exeErrorCode": 0,
[2025-11-22 23:35:14]     "exeErrorDiag": "",
[2025-11-22 23:35:14]     "pilotErrorCode": 0,
[2025-11-22 23:35:14]     "pilotErrorDiag": "",
[2025-11-22 23:35:14]  *** Listing of results directory ***
[2025-11-22 23:35:14] total 1327228
[2025-11-22 23:35:14] -rwx------. 1 boinc boinc     36292 Nov 18 17:24 runpilot2-wrapper.sh
[2025-11-22 23:35:14] -rw-r--r--. 1 boinc boinc      5112 Nov 18 17:24 queuedata.json
[2025-11-22 23:35:14] -rw-r--r--. 1 boinc boinc    576529 Nov 18 17:24 pilot3.tar.gz
[2025-11-22 23:35:14] -rw-r--r--. 1 boinc boinc       100 Nov 21 22:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 23:35:14] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 22:12 run_atlas
[2025-11-22 23:35:14] -rw-r--r--. 1 boinc boinc       105 Nov 21 22:12 job.xml
[2025-11-22 23:35:14] -rw-r--r--. 2 boinc boinc 407633600 Nov 21 22:12 EVNT.47493065._000340.pool.root.1
[2025-11-22 23:35:14] -rw-r--r--. 1 boinc boinc      6388 Nov 21 22:12 init_data.xml
[2025-11-22 23:35:14] -rw-r--r--. 2 boinc boinc     15120 Nov 21 22:12 start_atlas.sh
[2025-11-22 23:35:14] drwxrwx--x. 2 boinc boinc        68 Nov 21 22:12 shared
[2025-11-22 23:35:14] -rw-r--r--. 2 boinc boinc    590095 Nov 21 22:12 input.tar.gz
[2025-11-22 23:35:14] -rw-r--r--. 1 boinc boinc         0 Nov 21 22:12 boinc_lockfile
[2025-11-22 23:35:14] -rw-r--r--. 1 boinc boinc      2772 Nov 21 22:12 pandaJob.out
[2025-11-22 23:35:14] -rw-------. 1 boinc boinc    989798 Nov 21 22:13 agis_schedconf.cvmfs.json
[2025-11-22 23:35:14] drwx------. 5 boinc boinc      4096 Nov 21 22:13 pilot3
[2025-11-22 23:35:14] -rw-r--r--. 1 boinc boinc       533 Nov 22 23:09 boinc_task_state.xml
[2025-11-22 23:35:14] -rw-------. 1 boinc boinc 918190546 Nov 22 23:31 HITS.47493068._003393.pool.root.1
[2025-11-22 23:35:14] -rw-------. 1 boinc boinc      1031 Nov 22 23:32 memory_monitor_summary.json
[2025-11-22 23:35:14] -rw-------. 1 boinc boinc   1526164 Nov 22 23:32 agis_ddmendpoints.agis.ALL.json
[2025-11-22 23:35:14] -rw-------. 1 boinc boinc   2551542 Nov 22 23:32 log.47493068._003393.job.log.tgz.1
[2025-11-22 23:35:14] -rw-------. 1 boinc boinc      8629 Nov 22 23:34 heartbeat.json
[2025-11-22 23:35:14] -rw-------. 1 boinc boinc        95 Nov 22 23:35 pilot_heartbeat.json
[2025-11-22 23:35:14] -rw-r--r--. 1 boinc boinc      8192 Nov 22 23:35 boinc_mmap_file
[2025-11-22 23:35:14] -rw-r--r--. 1 boinc boinc        29 Nov 22 23:35 wrapper_checkpoint.txt
[2025-11-22 23:35:14] -rw-------. 1 boinc boinc      4883 Nov 22 23:35 pilotlog.txt
[2025-11-22 23:35:14] -rw-------. 1 boinc boinc  12127675 Nov 22 23:35 log.47493068._003393.job.log.1
[2025-11-22 23:35:14] -rw-------. 1 boinc boinc       353 Nov 22 23:35 output.list
[2025-11-22 23:35:14] -rw-r--r--. 1 boinc boinc       620 Nov 22 23:35 runtime_log
[2025-11-22 23:35:14] -rw-------. 1 boinc boinc  14694400 Nov 22 23:35 result.tar.gz
[2025-11-22 23:35:14] -rw-r--r--. 1 boinc boinc      8703 Nov 22 23:35 runtime_log.err
[2025-11-22 23:35:14] -rw-------. 1 boinc boinc       662 Nov 22 23:35 l1MLDmdgdf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKTFKDmfHl9pm.diag
[2025-11-22 23:35:14] -rw-r--r--. 1 boinc boinc     21489 Nov 22 23:35 stderr.txt
[2025-11-22 23:35:15] HITS file was successfully produced:
[2025-11-22 23:35:15] -rw-------. 1 boinc boinc 918190546 Nov 22 23:31 shared/HITS.pool.root.1
[2025-11-22 23:35:15]  *** Contents of shared directory: ***
[2025-11-22 23:35:15] total 1309700
[2025-11-22 23:35:15] -rw-r--r--. 2 boinc boinc 407633600 Nov 21 22:12 ATLAS.root_0
[2025-11-22 23:35:15] -rw-r--r--. 2 boinc boinc     15120 Nov 21 22:12 start_atlas.sh
[2025-11-22 23:35:15] -rw-r--r--. 2 boinc boinc    590095 Nov 21 22:12 input.tar.gz
[2025-11-22 23:35:15] -rw-------. 1 boinc boinc 918190546 Nov 22 23:31 HITS.pool.root.1
[2025-11-22 23:35:15] -rw-------. 1 boinc boinc  14694400 Nov 22 23:35 result.tar.gz
23:35:16 (31311): run_atlas exited; CPU time 339155.894989
23:35:16 (31311): called boinc_finish(0)

</stderr_txt>
]]>

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