Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:23:10 (11775): wrapper (7.7.26015): starting
00:23:10 (11775): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 00:23:10] Arguments: --nthreads 8
[2025-11-21 00:23:10] Threads: 8
[2025-11-21 00:23:10] Checking for CVMFS
[2025-11-21 00:23:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 00:23:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 00:23:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 00:23:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 00:23:10] 2.11.2.0 17493 79741 95204 153101 0 232 12922247 25165824 3635 130560 2 21996881 99.863 13385290 1927 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-21 00:23:10] CVMFS is ok
[2025-11-21 00:23:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:23:10] Checking for apptainer binary...
[2025-11-21 00:23:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 00:23:10] Running /usr/bin/apptainer --version
[2025-11-21 00:23:10] apptainer version 1.3.2-1.el7
[2025-11-21 00:23:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:23:12] cg-vwn341.simple-grid.lan
[2025-11-21 00:23:12] apptainer works
[2025-11-21 00:23:12] Set ATHENA_PROC_NUMBER=8
[2025-11-21 00:23:12] Set ATHENA_CORE_NUMBER=8
[2025-11-21 00:23:12] Starting ATLAS job with PandaID=6891572150
[2025-11-21 00:23:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 02:32:32]  *** The last 200 lines of the pilot log: ***
[2025-11-22 02:32:32] 2025-11-22 01:31:30,908 | INFO     | mean x: 1763728044.9006493
[2025-11-22 02:32:32] 2025-11-22 01:31:30,908 | INFO     | mean y: 2886234.55974026
[2025-11-22 02:32:32] 2025-11-22 01:31:30,908 | INFO     | intersect: -5787557032.504371
[2025-11-22 02:32:32] 2025-11-22 01:31:30,910 | INFO     | chi2: 7.9939837194072485
[2025-11-22 02:32:32] 2025-11-22 01:31:30,912 | INFO     | sum of square deviations: 1121509992467.9583
[2025-11-22 02:32:32] 2025-11-22 01:31:30,981 | INFO     | sum of deviations: 4239987565579.2744
[2025-11-22 02:32:32] 2025-11-22 01:31:30,981 | INFO     | mean x: 1763727892.4052117
[2025-11-22 02:32:32] 2025-11-22 01:31:30,981 | INFO     | mean y: 2893472.816286645
[2025-11-22 02:32:32] 2025-11-22 01:31:30,981 | INFO     | intersect: -6665067029.619531
[2025-11-22 02:32:32] 2025-11-22 01:31:30,983 | INFO     | chi2: 4.846978902914292
[2025-11-22 02:32:32] 2025-11-22 01:31:30,984 | INFO     | current chi2=4.846978902914292 (change=39.36716569553267 %)
[2025-11-22 02:32:32] 2025-11-22 01:31:30,986 | INFO     | sum of square deviations: 1110586919945.5522
[2025-11-22 02:32:32] 2025-11-22 01:31:31,050 | INFO     | sum of deviations: 4539959754123.069
[2025-11-22 02:32:32] 2025-11-22 01:31:31,050 | INFO     | mean x: 1763727739.9098039
[2025-11-22 02:32:32] 2025-11-22 01:31:31,050 | INFO     | mean y: 2897658.0222222223
[2025-11-22 02:32:32] 2025-11-22 01:31:31,051 | INFO     | intersect: -7207031445.7831
[2025-11-22 02:32:32] 2025-11-22 01:31:31,052 | INFO     | chi2: 3.5908342971102125
[2025-11-22 02:32:32] 2025-11-22 01:31:31,053 | INFO     | current chi2=3.5908342971102125 (change=25.916032047278158 %)
[2025-11-22 02:32:32] 2025-11-22 01:31:31,055 | INFO     | sum of square deviations: 1099734731929.5637
[2025-11-22 02:32:32] 2025-11-22 01:31:31,123 | INFO     | sum of deviations: 4627170521702.997
[2025-11-22 02:32:32] 2025-11-22 01:31:31,123 | INFO     | mean x: 1763727587.4124591
[2025-11-22 02:32:32] 2025-11-22 01:31:31,124 | INFO     | mean y: 2898882.4944262295
[2025-11-22 02:32:32] 2025-11-22 01:31:31,124 | INFO     | intersect: -7418043699.240804
[2025-11-22 02:32:32] 2025-11-22 01:31:31,126 | INFO     | chi2: 3.404648359574498
[2025-11-22 02:32:32] 2025-11-22 01:31:31,126 | INFO     | current chi2=3.404648359574498 (change=5.185032840015783 %)
[2025-11-22 02:32:32] 2025-11-22 01:31:31,126 | INFO     | right removable region: 1524
[2025-11-22 02:32:32] 2025-11-22 01:31:31,128 | INFO     | sum of square deviations: 1121508676697.9587
[2025-11-22 02:32:32] 2025-11-22 01:31:31,197 | INFO     | sum of deviations: 3207674583887.6626
[2025-11-22 02:32:32] 2025-11-22 01:31:31,198 | INFO     | mean x: 1763728197.4052117
[2025-11-22 02:32:32] 2025-11-22 01:31:31,198 | INFO     | mean y: 2893311.3172638435
[2025-11-22 02:32:32] 2025-11-22 01:31:31,198 | INFO     | intersect: -5041620591.472942
[2025-11-22 02:32:32] 2025-11-22 01:31:31,200 | INFO     | chi2: 5.154659730312604
[2025-11-22 02:32:32] 2025-11-22 01:31:31,200 | INFO     | current chi2=5.154659730312604 (change=35.51826084160676 %)
[2025-11-22 02:32:32] 2025-11-22 01:31:31,202 | INFO     | sum of square deviations: 1110584662828.8215
[2025-11-22 02:32:32] 2025-11-22 01:31:31,235 | INFO     | time since job start (94073s) is within the limit (172800.0s)
[2025-11-22 02:32:32] 2025-11-22 01:31:31,235 | INFO     | 94076s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-22 02:32:32] 2025-11-22 01:31:31,276 | INFO     | sum of deviations: 3051821877109.5244
[2025-11-22 02:32:32] 2025-11-22 01:31:31,276 | INFO     | mean x: 1763728349.9071896
[2025-11-22 02:32:32] 2025-11-22 01:31:31,276 | INFO     | mean y: 2895485.4614379085
[2025-11-22 02:32:32] 2025-11-22 01:31:31,276 | INFO     | intersect: -4843727148.255485
[2025-11-22 02:32:32] 2025-11-22 01:31:31,278 | INFO     | chi2: 4.896552846949258
[2025-11-22 02:32:32] 2025-11-22 01:31:31,279 | INFO     | current chi2=4.896552846949258 (change=5.007253569920762 %)
[2025-11-22 02:32:32] 2025-11-22 01:31:31,279 | INFO     | left removable region: 20
[2025-11-22 02:32:32] 2025-11-22 01:31:31,281 | INFO     | sum of square deviations: 1054924710009.5841
[2025-11-22 02:32:32] 2025-11-22 01:31:31,341 | INFO     | sum of deviations: 3794719829401.7524
[2025-11-22 02:32:32] 2025-11-22 01:31:31,341 | INFO     | mean x: 1763728166.9208777
[2025-11-22 02:32:32] 2025-11-22 01:31:31,341 | INFO     | mean y: 2910787.182845745
[2025-11-22 02:32:32] 2025-11-22 01:31:31,342 | INFO     | intersect: -6341479656.215009
[2025-11-22 02:32:32] 2025-11-22 01:31:31,344 | INFO     | chi2: 0.22515064861514802
[2025-11-22 02:32:32] 2025-11-22 01:31:31,344 | INFO     | current memory leak: 3.60 B/s (using 1504 data points, chi2=0.23)
[2025-11-22 02:32:32] 2025-11-22 01:31:31,347 | INFO     | could have reported an average CPU frequency of 1999 MHz (52 samples)
[2025-11-22 02:32:32] 2025-11-22 01:31:31,347 | INFO     | ..............................
[2025-11-22 02:32:32] 2025-11-22 01:31:31,347 | INFO     | . Timing measurements:
[2025-11-22 02:32:32] 2025-11-22 01:31:31,347 | INFO     | . get job = 0 s
[2025-11-22 02:32:32] 2025-11-22 01:31:31,347 | INFO     | . initial setup = 4 s
[2025-11-22 02:32:32] 2025-11-22 01:31:31,348 | INFO     | . payload setup = 17 s
[2025-11-22 02:32:32] 2025-11-22 01:31:31,348 | INFO     | . stage-in = 0 s
[2025-11-22 02:32:32] 2025-11-22 01:31:31,348 | INFO     | . payload execution = 93920 s
[2025-11-22 02:32:32] 2025-11-22 01:31:31,348 | INFO     | . stage-out = 6 s
[2025-11-22 02:32:32] 2025-11-22 01:31:31,348 | INFO     | . log creation = 2 s
[2025-11-22 02:32:32] 2025-11-22 01:31:31,348 | INFO     | ..............................
[2025-11-22 02:32:32] 2025-11-22 01:31:31,690 | INFO     | 
[2025-11-22 02:32:32] 2025-11-22 01:31:31,691 | INFO     | job summary report
[2025-11-22 02:32:32] 2025-11-22 01:31:31,691 | INFO     | --------------------------------------------------
[2025-11-22 02:32:32] 2025-11-22 01:31:31,691 | INFO     | PanDA job id: 6891572150
[2025-11-22 02:32:32] 2025-11-22 01:31:31,691 | INFO     | task id: 47493068
[2025-11-22 02:32:32] 2025-11-22 01:31:31,691 | INFO     | errors: (none)
[2025-11-22 02:32:32] 2025-11-22 01:31:31,691 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 02:32:32] 2025-11-22 01:31:31,691 | INFO     | pilot state: finished 
[2025-11-22 02:32:32] 2025-11-22 01:31:31,692 | INFO     | transexitcode: 0
[2025-11-22 02:32:32] 2025-11-22 01:31:31,692 | INFO     | exeerrorcode: 0
[2025-11-22 02:32:32] 2025-11-22 01:31:31,692 | INFO     | exeerrordiag: 
[2025-11-22 02:32:32] 2025-11-22 01:31:31,692 | INFO     | exitcode: 0
[2025-11-22 02:32:32] 2025-11-22 01:31:31,692 | INFO     | exitmsg: OK
[2025-11-22 02:32:32] 2025-11-22 01:31:31,692 | INFO     | cpuconsumptiontime: 346459 s
[2025-11-22 02:32:32] 2025-11-22 01:31:31,692 | INFO     | nevents: 1000
[2025-11-22 02:32:32] 2025-11-22 01:31:31,692 | INFO     | neventsw: 0
[2025-11-22 02:32:32] 2025-11-22 01:31:31,692 | INFO     | pid: 29450
[2025-11-22 02:32:32] 2025-11-22 01:31:31,692 | INFO     | pgrp: 29450
[2025-11-22 02:32:32] 2025-11-22 01:31:31,692 | INFO     | corecount: 8
[2025-11-22 02:32:32] 2025-11-22 01:31:31,692 | INFO     | event service: False
[2025-11-22 02:32:32] 2025-11-22 01:31:31,693 | INFO     | sizes: {0: 2298626, 1: 2298825, 12: 2298825, 23: 2298853, 27: 2299143, 34: 2299171, 93941: 2364253, 93949: 2373305, 94029: 2373495}
[2025-11-22 02:32:32] 2025-11-22 01:31:31,693 | INFO     | --------------------------------------------------
[2025-11-22 02:32:32] 2025-11-22 01:31:31,693 | INFO     | 
[2025-11-22 02:32:32] 2025-11-22 01:31:31,693 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-11-22 02:32:32] 2025-11-22 01:31:32,213 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 02:32:32] 2025-11-22 01:31:32,213 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 02:32:32] 2025-11-22 01:31:32,213 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 02:32:32] 2025-11-22 01:31:32,213 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 02:32:32] 2025-11-22 01:31:32,213 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 02:32:32] 2025-11-22 01:31:32,213 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 02:32:32] 2025-11-22 01:31:32,214 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 02:32:32] 2025-11-22 01:31:32,214 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 02:32:32] 2025-11-22 01:31:32,214 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 02:32:32] 2025-11-22 01:31:32,214 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 02:32:32] 2025-11-22 01:31:32,214 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 02:32:32] 2025-11-22 01:31:32,214 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 02:32:32] 2025-11-22 01:31:32,214 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 02:32:32] 2025-11-22 01:31:32,214 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 02:32:32] 2025-11-22 01:31:32,214 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 02:32:32] 2025-11-22 01:31:32,214 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 02:32:32] 2025-11-22 01:31:32,214 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 02:32:32] 2025-11-22 01:31:32,215 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 02:32:32] 2025-11-22 01:31:32,215 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 02:32:32] 2025-11-22 01:31:32,215 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 02:32:32] 2025-11-22 01:31:32,215 | INFO     | job 6891572150 has completed (purged errors)
[2025-11-22 02:32:32] 2025-11-22 01:31:32,215 | INFO     | overall cleanup function is called
[2025-11-22 02:32:32] 2025-11-22 01:31:33,232 | INFO     | --- collectZombieJob: --- 10, [29450]
[2025-11-22 02:32:32] 2025-11-22 01:31:33,233 | INFO     | zombie collector waiting for pid 29450
[2025-11-22 02:32:32] 2025-11-22 01:31:33,233 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 02:32:32] 2025-11-22 01:31:33,233 | INFO     | collected zombie processes
[2025-11-22 02:32:32] 2025-11-22 01:31:33,233 | INFO     | will attempt to kill all subprocesses of pid=29450
[2025-11-22 02:32:32] 2025-11-22 01:31:33,343 | INFO     | process IDs to be killed: [29450] (in reverse order)
[2025-11-22 02:32:32] 2025-11-22 01:31:34,119 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 02:32:32] 2025-11-22 01:31:34,120 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 02:32:32] 2025-11-22 01:31:34,123 | INFO     | did not find any defunct processes belonging to 29450
[2025-11-22 02:32:32] 2025-11-22 01:31:34,126 | INFO     | did not find any defunct processes belonging to 29450
[2025-11-22 02:32:32] 2025-11-22 01:31:34,171 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 02:32:32] 2025-11-22 01:31:34,171 | INFO     | ready for new job
[2025-11-22 02:32:32] 2025-11-22 01:31:34,171 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 02:32:32] 2025-11-22 01:31:34,178 | INFO     | ***************************************
[2025-11-22 02:32:32] 2025-11-22 01:31:34,178 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 02:32:32] 2025-11-22 01:31:34,179 | INFO     | ***************************************
[2025-11-22 02:32:32] 2025-11-22 01:31:34,179 | INFO     | 
[2025-11-22 02:32:32] 2025-11-22 01:31:34,179 | INFO     | pilot is running in a VM
[2025-11-22 02:32:32] 2025-11-22 01:31:34,180 | INFO     | architecture information:
[2025-11-22 02:32:32] 2025-11-22 01:31:34,195 | INFO     | executing command: cat /etc/os-release
[2025-11-22 02:32:32] 2025-11-22 01:31:34,480 | INFO     | cat /etc/os-release:
[2025-11-22 02:32:32] NAME="CentOS Linux"
[2025-11-22 02:32:32] VERSION="7 (Core)"
[2025-11-22 02:32:32] ID="centos"
[2025-11-22 02:32:32] ID_LIKE="rhel fedora"
[2025-11-22 02:32:32] VERSION_ID="7"
[2025-11-22 02:32:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 02:32:32] ANSI_COLOR="0;31"
[2025-11-22 02:32:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 02:32:32] HOME_URL="https://www.centos.org/"
[2025-11-22 02:32:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 02:32:32] 
[2025-11-22 02:32:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 02:32:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 02:32:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 02:32:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 02:32:32] 
[2025-11-22 02:32:32] 2025-11-22 01:31:34,481 | INFO     | ***************************************
[2025-11-22 02:32:32] 2025-11-22 01:31:34,985 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-11-22 02:32:32] 2025-11-22 01:31:35,133 | INFO     | sufficient remaining disk space (495164850176 B)
[2025-11-22 02:32:32] 2025-11-22 01:31:35,134 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 02:32:32] 2025-11-22 01:31:35,134 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 02:32:32] 2025-11-22 01:31:35,134 | INFO     | update_server=False
[2025-11-22 02:32:32] 2025-11-22 01:31:35,134 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 02:32:32] 2025-11-22 01:31:35,134 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 02:32:32] 2025-11-22 01:31:35,135 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 02:32:32] 2025-11-22 01:31:35,178 | INFO     | all job control threads have been joined
[2025-11-22 02:32:32] 2025-11-22 01:31:35,213 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 02:32:32] 2025-11-22 01:31:35,214 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 02:32:32] 2025-11-22 01:31:35,214 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 02:32:32] 2025-11-22 01:31:35,214 | INFO     | will abort loop
[2025-11-22 02:32:32] 2025-11-22 01:31:35,409 | INFO     | all data control threads have been joined
[2025-11-22 02:32:32] 2025-11-22 01:31:36,140 | INFO     | [job] retrieve thread has finished
[2025-11-22 02:32:32] 2025-11-22 01:31:36,183 | INFO     | [job] control thread has finished
[2025-11-22 02:32:32] 2025-11-22 01:31:36,220 | INFO     | [job] job monitor thread has finished
[2025-11-22 02:32:32] 2025-11-22 01:31:36,272 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 02:32:32] 2025-11-22 01:31:36,393 | INFO     | [payload] failed_post thread has finished
[2025-11-22 02:32:32] 2025-11-22 01:31:36,416 | INFO     | [data] control thread has finished
[2025-11-22 02:32:32] 2025-11-22 01:31:36,455 | INFO     | all payload control threads have been joined
[2025-11-22 02:32:32] 2025-11-22 01:31:36,496 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 02:32:32] 2025-11-22 01:31:36,667 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 02:32:32] 2025-11-22 01:31:36,690 | INFO     | [job] validate thread has finished
[2025-11-22 02:32:32] 2025-11-22 01:31:36,729 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 02:32:32] 2025-11-22 01:31:36,937 | INFO     | [payload] validate_post thread has finished
[2025-11-22 02:32:32] 2025-11-22 01:31:37,015 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 02:32:32] 2025-11-22 01:31:37,020 | INFO     | [data] copytool_in thread has finished
[2025-11-22 02:32:32] 2025-11-22 01:31:37,146 | INFO     | [data] copytool_out thread has finished
[2025-11-22 02:32:32] 2025-11-22 01:31:37,462 | INFO     | [payload] control thread has finished
[2025-11-22 02:32:32] 2025-11-22 01:31:37,502 | INFO     | [job] queue monitor thread has finished
[2025-11-22 02:32:32] 2025-11-22 01:31:39,146 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 02:32:32] 2025-11-22 01:32:04,448 | INFO     | PID=17342 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 02:32:32] 2025-11-22 01:32:04,449 | INFO     | .. there are 9 such processes running
[2025-11-22 02:32:32] 2025-11-22 01:32:04,451 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 02:32:32] 2025-11-22 01:32:04,451 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 02:32:32] 2025-11-22 01:32:04,451 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 02:32:32] 2025-11-22 01:32:23,199 | INFO     | [monitor] cgroup control has ended
[2025-11-22 02:32:32] 2025-11-22 01:32:24,744 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139681543026496)>', '<ExcThread(monitor, started 139681110939392)>']
[2025-11-22 02:32:32] 2025-11-22 01:32:25,576 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 02:32:32] 2025-11-22 01:32:25,577 | INFO     | [monitor] control thread has ended
[2025-11-22 02:32:32] 2025-11-22 01:32:29,769 | INFO     | all workflow threads have been joined
[2025-11-22 02:32:32] 2025-11-22 01:32:29,770 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 02:32:32] 2025-11-22 01:32:29,770 | INFO     | traces error code: 0
[2025-11-22 02:32:32] 2025-11-22 01:32:29,770 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 02:32:32] 2025-11-22 01:32:30,026 [wrapper] ==== pilot stdout END ====
[2025-11-22 02:32:32] 2025-11-22 01:32:30,034 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 02:32:32] 2025-11-22 01:32:30,042 [wrapper] pilotpid: 17342
[2025-11-22 02:32:32] 2025-11-22 01:32:30,046 [wrapper] Pilot exit status: 0
[2025-11-22 02:32:32] 2025-11-22 01:32:30,069 [wrapper] pandaids: 6891572150
[2025-11-22 02:32:32] 2025-11-22 01:32:30,124 [wrapper] cleanup supervisor_pilot 18009 17343
[2025-11-22 02:32:32] 2025-11-22 01:32:30,138 [wrapper] Test setup, not cleaning
[2025-11-22 02:32:32] 2025-11-22 01:32:30,208 [wrapper] apfmon messages muted
[2025-11-22 02:32:32] 2025-11-22 01:32:30,318 [wrapper] ==== wrapper stdout END ====
[2025-11-22 02:32:32] 2025-11-22 01:32:30,379 [wrapper] ==== wrapper stderr END ====
[2025-11-22 02:32:32]  *** Error codes and diagnostics ***
[2025-11-22 02:32:32]     "exeErrorCode": 0,
[2025-11-22 02:32:32]     "exeErrorDiag": "",
[2025-11-22 02:32:32]     "pilotErrorCode": 0,
[2025-11-22 02:32:32]     "pilotErrorDiag": "",
[2025-11-22 02:32:32]  *** Listing of results directory ***
[2025-11-22 02:32:32] total 1349020
[2025-11-22 02:32:32] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:47 pilot3.tar.gz
[2025-11-22 02:32:32] -rw-r--r--. 1 boinc boinc      5112 Nov 18 17:20 queuedata.json
[2025-11-22 02:32:32] -rwx------. 1 boinc boinc     36292 Nov 18 17:21 runpilot2-wrapper.sh
[2025-11-22 02:32:32] -rw-r--r--. 1 boinc boinc       100 Nov 21 00:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 02:32:32] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 00:23 run_atlas
[2025-11-22 02:32:32] -rw-r--r--. 1 boinc boinc       105 Nov 21 00:23 job.xml
[2025-11-22 02:32:32] -rw-r--r--. 2 boinc boinc 410614358 Nov 21 00:23 EVNT.47493065._000332.pool.root.1
[2025-11-22 02:32:32] -rw-r--r--. 1 boinc boinc      6392 Nov 21 00:23 init_data.xml
[2025-11-22 02:32:32] -rw-r--r--. 2 boinc boinc     15120 Nov 21 00:23 start_atlas.sh
[2025-11-22 02:32:32] drwxrwx--x. 2 boinc boinc        68 Nov 21 00:23 shared
[2025-11-22 02:32:32] -rw-r--r--. 2 boinc boinc    590103 Nov 21 00:23 input.tar.gz
[2025-11-22 02:32:32] -rw-r--r--. 1 boinc boinc         0 Nov 21 00:23 boinc_lockfile
[2025-11-22 02:32:32] -rw-r--r--. 1 boinc boinc      2773 Nov 21 00:23 pandaJob.out
[2025-11-22 02:32:32] -rw-------. 1 boinc boinc    989817 Nov 21 00:23 agis_schedconf.cvmfs.json
[2025-11-22 02:32:32] drwx------. 5 boinc boinc      4096 Nov 21 00:23 pilot3
[2025-11-22 02:32:32] -rw-r--r--. 1 boinc boinc       533 Nov 22 02:12 boinc_task_state.xml
[2025-11-22 02:32:32] -rw-------. 1 boinc boinc 936605528 Nov 22 02:29 HITS.47493068._003318.pool.root.1
[2025-11-22 02:32:32] -rw-------. 1 boinc boinc      1033 Nov 22 02:30 memory_monitor_summary.json
[2025-11-22 02:32:32] -rw-------. 1 boinc boinc   1526164 Nov 22 02:30 agis_ddmendpoints.agis.ALL.json
[2025-11-22 02:32:32] -rw-------. 1 boinc boinc   2595388 Nov 22 02:30 log.47493068._003318.job.log.tgz.1
[2025-11-22 02:32:32] -rw-------. 1 boinc boinc      8622 Nov 22 02:31 heartbeat.json
[2025-11-22 02:32:32] -rw-------. 1 boinc boinc        95 Nov 22 02:32 pilot_heartbeat.json
[2025-11-22 02:32:32] -rw-r--r--. 1 boinc boinc        29 Nov 22 02:32 wrapper_checkpoint.txt
[2025-11-22 02:32:32] -rw-r--r--. 1 boinc boinc      8192 Nov 22 02:32 boinc_mmap_file
[2025-11-22 02:32:32] -rw-------. 1 boinc boinc      5071 Nov 22 02:32 pilotlog.txt
[2025-11-22 02:32:32] -rw-------. 1 boinc boinc  12537825 Nov 22 02:32 log.47493068._003318.job.log.1
[2025-11-22 02:32:32] -rw-------. 1 boinc boinc       353 Nov 22 02:32 output.list
[2025-11-22 02:32:32] -rw-r--r--. 1 boinc boinc       620 Nov 22 02:32 runtime_log
[2025-11-22 02:32:32] -rw-------. 1 boinc boinc  15155200 Nov 22 02:32 result.tar.gz
[2025-11-22 02:32:32] -rw-r--r--. 1 boinc boinc      8717 Nov 22 02:32 runtime_log.err
[2025-11-22 02:32:32] -rw-------. 1 boinc boinc       662 Nov 22 02:32 IRCMDmgddf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxlFKDmyW4VSm.diag
[2025-11-22 02:32:32] -rw-r--r--. 1 boinc boinc     20903 Nov 22 02:32 stderr.txt
[2025-11-22 02:32:32] HITS file was successfully produced:
[2025-11-22 02:32:32] -rw-------. 1 boinc boinc 936605528 Nov 22 02:29 shared/HITS.pool.root.1
[2025-11-22 02:32:32]  *** Contents of shared directory: ***
[2025-11-22 02:32:32] total 1331044
[2025-11-22 02:32:32] -rw-r--r--. 2 boinc boinc 410614358 Nov 21 00:23 ATLAS.root_0
[2025-11-22 02:32:32] -rw-r--r--. 2 boinc boinc     15120 Nov 21 00:23 start_atlas.sh
[2025-11-22 02:32:32] -rw-r--r--. 2 boinc boinc    590103 Nov 21 00:23 input.tar.gz
[2025-11-22 02:32:32] -rw-------. 1 boinc boinc 936605528 Nov 22 02:29 HITS.pool.root.1
[2025-11-22 02:32:32] -rw-------. 1 boinc boinc  15155200 Nov 22 02:32 result.tar.gz
02:32:34 (11775): run_atlas exited; CPU time 346942.726441
02:32:34 (11775): called boinc_finish(0)

</stderr_txt>
]]>

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