Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:08:07 (2037799): wrapper (7.7.26015): starting
12:08:07 (2037799): wrapper: running run_atlas (--nthreads 12)
[2025-11-18 12:08:07] Arguments: --nthreads 12
[2025-11-18 12:08:07] Threads: 12
[2025-11-18 12:08:07] Checking for CVMFS
[2025-11-18 12:08:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-18 12:08:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-18 12:08:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-18 12:08:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-18 12:08:07] 2.11.3.0 1506499 17282 235760 153012 0 261 41272291 45568001 16103 130560 0 184525842 99.781 118244960 17020 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-18 12:08:07] CVMFS is ok
[2025-11-18 12:08:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-18 12:08:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-18 12:08:07] Further information can be found at the LHC@home message board.
[2025-11-18 12:08:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-18 12:08:07] Checking for apptainer binary...
[2025-11-18 12:08:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-18 12:08:07] Running /usr/bin/apptainer --version
[2025-11-18 12:08:07] apptainer version 1.4.1-1.el9
[2025-11-18 12:08:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-18 12:08:07] wns0169.triumf.lcg
[2025-11-18 12:08:07] apptainer works
[2025-11-18 12:08:07] Set ATHENA_PROC_NUMBER=12
[2025-11-18 12:08:07] Set ATHENA_CORE_NUMBER=12
[2025-11-18 12:08:07] Starting ATLAS job with PandaID=6891592059
[2025-11-18 12:08:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-18 12:12:22]  *** The last 200 lines of the pilot log: ***
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | could have reported an average CPU frequency of 2876 MHz (4 samples)
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | ..............................
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | . Timing measurements:
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | . get job = 0 s
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | . initial setup = 2 s
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | . payload setup = 3 s
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | . stage-in = 0 s
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | . payload execution = 40 s
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | . stage-out = 0 s
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | . log creation = 0 s
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | ..............................
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 12:12:22] 2025-11-18 20:11:16,448 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891592059/pilotlog.txt
[2025-11-18 12:12:22] 2025-11-18 20:11:16,456 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-18 12:12:22] - Log from pilotlog.txt -
[2025-11-18 12:12:22] 2025-11-18 20:11:16,445 | INFO     | extracted standard memory fields from prmon json
[2025-11-18 12:12:22] 2025-11-18 20:11:16,445 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-18 12:12:22] 2025-11-18 20:11:16,445 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-18 12:12:22] 2025-11-18 20:11:16,445 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-18 12:12:22] 2025-11-18 20:11:16,446 | WARNING  | found no stored workdir sizes
[2025-11-18 12:12:22] 2025-11-18 20:11:16,446 | INFO     | will not add max space = 0 B to job metrics
[2025-11-18 12:12:22] 2025-11-18 20:11:16,446 | WARNING  | wrong length of table data, x=[1763496516.0], y=[856.0] (must be same and length>=4)
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | could have reported an average CPU frequency of 2876 MHz (4 samples)
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | ..............................
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | . Timing measurements:
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | . get job = 0 s
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | . initial setup = 2 s
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | . payload setup = 3 s
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | . stage-in = 0 s
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | . payload execution = 40 s
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | . stage-out = 0 s
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | . log creation = 0 s
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | ..............................
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 12:12:22] 2025-11-18 20:11:16,448 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891592059/pilotlog.txt
[2025-11-18 12:12:22] 2025-11-18 20:11:16,456 | WARNING  | 
[2025-11-18 12:12:22] [begin log extracts]
[2025-11-18 12:12:22] - Log from pilotlog.txt -
[2025-11-18 12:12:22] 2025-11-18 20:11:16,445 | INFO     | extracted standard memory fields from prmon json
[2025-11-18 12:12:22] 2025-11-18 20:11:16,445 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-18 12:12:22] 2025-11-18 20:11:16,445 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-18 12:12:22] 2025-11-18 20:11:16,445 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-18 12:12:22] 2025-11-18 20:11:16,446 | WARNING  | found no stored workdir sizes
[2025-11-18 12:12:22] 2025-11-18 20:11:16,446 | INFO     | will not add max space = 0 B to job metrics
[2025-11-18 12:12:22] 2025-11-18 20:11:16,446 | WARNING  | wrong length of table data, x=[1763496516.0], y=[856.0] (must be same and length>=4)
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | could have reported an average CPU frequency of 2876 MHz (4 samples)
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | ..............................
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | . Timing measurements:
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | . get job = 0 s
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | . initial setup = 2 s
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | . payload setup = 3 s
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | . stage-in = 0 s
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | . payload execution = 40 s
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | . stage-out = 0 s
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | . log creation = 0 s
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | ..............................
[2025-11-18 12:12:22] 2025-11-18 20:11:16,447 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 12:12:22] 2025-11-18 20:11:16,448 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891592059/pilotlog.txt
[2025-11-18 12:12:22] [end log extracts]
[2025-11-18 12:12:22] 2025-11-18 20:11:16,457 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-18 12:12:22] 2025-11-18 20:11:16,457 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-18 12:12:22] 2025-11-18 20:11:16,507 | INFO     | 
[2025-11-18 12:12:22] 2025-11-18 20:11:16,507 | INFO     | job summary report
[2025-11-18 12:12:22] 2025-11-18 20:11:16,507 | INFO     | --------------------------------------------------
[2025-11-18 12:12:22] 2025-11-18 20:11:16,507 | INFO     | PanDA job id: 6891592059
[2025-11-18 12:12:22] 2025-11-18 20:11:16,507 | INFO     | task id: 47493068
[2025-11-18 12:12:22] 2025-11-18 20:11:16,507 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-18 12:09:09,229 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-18 12:12:22] 2025-11-18 20:11:16,507 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-18 12:12:22] 2025-11-18 20:11:16,507 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-18 12:12:22] 2025-11-18 20:11:16,507 | INFO     | pilot state: failed 
[2025-11-18 12:12:22] 2025-11-18 20:11:16,507 | INFO     | transexitcode: 65
[2025-11-18 12:12:22] 2025-11-18 20:11:16,507 | INFO     | exeerrorcode: 65
[2025-11-18 12:12:22] 2025-11-18 20:11:16,507 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-18 12:12:22] 2025-11-18 20:11:16,507 | INFO     | exitcode: 65
[2025-11-18 12:12:22] 2025-11-18 20:11:16,507 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-18 12:12:22] 2025-11-18 20:11:16,508 | INFO     | cpuconsumptiontime: 34 s
[2025-11-18 12:12:22] 2025-11-18 20:11:16,508 | INFO     | nevents: 0
[2025-11-18 12:12:22] 2025-11-18 20:11:16,508 | INFO     | neventsw: 0
[2025-11-18 12:12:22] 2025-11-18 20:11:16,508 | INFO     | pid: 2048075
[2025-11-18 12:12:22] 2025-11-18 20:11:16,508 | INFO     | pgrp: 2048075
[2025-11-18 12:12:22] 2025-11-18 20:11:16,508 | INFO     | corecount: 12
[2025-11-18 12:12:22] 2025-11-18 20:11:16,508 | INFO     | event service: False
[2025-11-18 12:12:22] 2025-11-18 20:11:16,508 | INFO     | sizes: {0: 2297197, 3: 2297459, 11: 2297487, 48: 2327283, 168: 2327421}
[2025-11-18 12:12:22] 2025-11-18 20:11:16,508 | INFO     | --------------------------------------------------
[2025-11-18 12:12:22] 2025-11-18 20:11:16,508 | INFO     | 
[2025-11-18 12:12:22] 2025-11-18 20:11:16,508 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-18 12:12:22] 2025-11-18 20:11:16,520 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-18 12:12:22] 2025-11-18 20:11:16,521 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-18 12:12:22] 2025-11-18 20:11:16,521 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-18 12:12:22] 2025-11-18 20:11:16,521 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-18 12:12:22] 2025-11-18 20:11:16,521 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-18 12:12:22] 2025-11-18 20:11:16,521 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-18 12:12:22] 2025-11-18 20:11:16,521 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-18 12:12:22] 2025-11-18 20:11:16,521 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-18 12:12:22] 2025-11-18 20:11:16,521 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-18 12:12:22] 2025-11-18 20:11:16,521 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-18 12:12:22] 2025-11-18 20:11:16,521 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-18 12:12:22] 2025-11-18 20:11:16,521 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-18 12:12:22] 2025-11-18 20:11:16,521 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-18 12:12:22] 2025-11-18 20:11:16,521 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-18 12:12:22] 2025-11-18 20:11:16,521 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-18 12:12:22] 2025-11-18 20:11:16,521 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-18 12:12:22] 2025-11-18 20:11:16,521 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-18 12:12:22] 2025-11-18 20:11:16,521 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-18 12:12:22] 2025-11-18 20:11:16,521 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-18 12:12:22] 2025-11-18 20:11:16,521 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-18 12:12:22] 2025-11-18 20:11:16,522 | INFO     | job 6891592059 has completed (purged errors)
[2025-11-18 12:12:22] 2025-11-18 20:11:16,522 | INFO     | overall cleanup function is called
[2025-11-18 12:12:22] 2025-11-18 20:11:17,528 | INFO     | --- collectZombieJob: --- 10, [2048075]
[2025-11-18 12:12:22] 2025-11-18 20:11:17,528 | INFO     | zombie collector waiting for pid 2048075
[2025-11-18 12:12:22] 2025-11-18 20:11:17,528 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-18 12:12:22] 2025-11-18 20:11:17,529 | INFO     | collected zombie processes
[2025-11-18 12:12:22] 2025-11-18 20:11:17,529 | INFO     | will attempt to kill all subprocesses of pid=2048075
[2025-11-18 12:12:22] 2025-11-18 20:11:17,672 | INFO     | process IDs to be killed: [2048075] (in reverse order)
[2025-11-18 12:12:22] 2025-11-18 20:11:17,728 | WARNING  | found no corresponding commands to process id(s)
[2025-11-18 12:12:22] 2025-11-18 20:11:17,728 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-18 12:12:22] 2025-11-18 20:11:17,735 | INFO     | did not find any defunct processes belonging to 2048075
[2025-11-18 12:12:22] 2025-11-18 20:11:17,742 | INFO     | did not find any defunct processes belonging to 2048075
[2025-11-18 12:12:22] 2025-11-18 20:11:17,742 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-18 12:12:22] 2025-11-18 20:11:17,743 | INFO     | ready for new job
[2025-11-18 12:12:22] 2025-11-18 20:11:17,743 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-18 12:12:22] 2025-11-18 20:11:17,744 | INFO     | ***************************************
[2025-11-18 12:12:22] 2025-11-18 20:11:17,744 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-18 12:12:22] 2025-11-18 20:11:17,744 | INFO     | ***************************************
[2025-11-18 12:12:22] 2025-11-18 20:11:17,744 | INFO     | 
[2025-11-18 12:12:22] 2025-11-18 20:11:17,746 | INFO     | architecture information:
[2025-11-18 12:12:22] 2025-11-18 20:11:17,746 | INFO     | executing command: cat /etc/os-release
[2025-11-18 12:12:22] 2025-11-18 20:11:17,756 | INFO     | cat /etc/os-release:
[2025-11-18 12:12:22] NAME="CentOS Linux"
[2025-11-18 12:12:22] VERSION="7 (Core)"
[2025-11-18 12:12:22] ID="centos"
[2025-11-18 12:12:22] ID_LIKE="rhel fedora"
[2025-11-18 12:12:22] VERSION_ID="7"
[2025-11-18 12:12:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-18 12:12:22] ANSI_COLOR="0;31"
[2025-11-18 12:12:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-18 12:12:22] HOME_URL="https://www.centos.org/"
[2025-11-18 12:12:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-18 12:12:22] 
[2025-11-18 12:12:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-18 12:12:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-18 12:12:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-18 12:12:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-18 12:12:22] 
[2025-11-18 12:12:22] 2025-11-18 20:11:17,756 | INFO     | ***************************************
[2025-11-18 12:12:22] 2025-11-18 20:11:18,259 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-18 12:12:22] 2025-11-18 20:11:18,271 | INFO     | sufficient remaining disk space (2458606632960 B)
[2025-11-18 12:12:22] 2025-11-18 20:11:18,271 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-18 12:12:22] 2025-11-18 20:11:18,271 | INFO     | current server update state: UPDATING_FINAL
[2025-11-18 12:12:22] 2025-11-18 20:11:18,271 | INFO     | update_server=False
[2025-11-18 12:12:22] 2025-11-18 20:11:18,271 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-18 12:12:22] 2025-11-18 20:11:18,272 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-18 12:12:22] 2025-11-18 20:11:18,334 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-18 12:12:22] 2025-11-18 20:11:18,334 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-18 12:12:22] 2025-11-18 20:11:18,335 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-18 12:12:22] 2025-11-18 20:11:18,335 | INFO     | will abort loop
[2025-11-18 12:12:22] 2025-11-18 20:11:18,530 | INFO     | all payload control threads have been joined
[2025-11-18 12:12:22] 2025-11-18 20:11:19,123 | INFO     | all job control threads have been joined
[2025-11-18 12:12:22] 2025-11-18 20:11:19,213 | INFO     | all data control threads have been joined
[2025-11-18 12:12:22] 2025-11-18 20:11:19,276 | INFO     | [job] retrieve thread has finished
[2025-11-18 12:12:22] 2025-11-18 20:11:19,277 | INFO     | [job] queue monitor thread has finished
[2025-11-18 12:12:22] 2025-11-18 20:11:19,340 | INFO     | [job] job monitor thread has finished
[2025-11-18 12:12:22] 2025-11-18 20:11:19,480 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-18 12:12:22] 2025-11-18 20:11:19,533 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-18 12:12:22] 2025-11-18 20:11:19,535 | INFO     | [payload] control thread has finished
[2025-11-18 12:12:22] 2025-11-18 20:11:19,568 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-18 12:12:22] 2025-11-18 20:11:19,579 | INFO     | [job] validate thread has finished
[2025-11-18 12:12:22] 2025-11-18 20:11:19,590 | INFO     | [data] copytool_in thread has finished
[2025-11-18 12:12:22] 2025-11-18 20:11:19,681 | INFO     | [job] create_data_payload thread has finished
[2025-11-18 12:12:22] 2025-11-18 20:11:19,798 | INFO     | [payload] validate_pre thread has finished
[2025-11-18 12:12:22] 2025-11-18 20:11:19,995 | INFO     | [payload] validate_post thread has finished
[2025-11-18 12:12:22] 2025-11-18 20:11:20,128 | INFO     | [job] control thread has finished
[2025-11-18 12:12:22] 2025-11-18 20:11:20,144 | INFO     | [payload] execute_payloads thread has finished
[2025-11-18 12:12:22] 2025-11-18 20:11:20,221 | INFO     | [data] control thread has finished
[2025-11-18 12:12:22] 2025-11-18 20:11:20,562 | INFO     | [payload] failed_post thread has finished
[2025-11-18 12:12:22] 2025-11-18 20:11:21,539 | INFO     | [data] copytool_out thread has finished
[2025-11-18 12:12:22] 2025-11-18 20:11:23,573 | INFO     | [data] queue_monitor thread has finished
[2025-11-18 12:12:22] 2025-11-18 20:11:48,812 | INFO     | PID=2041470 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-18 12:12:22] 2025-11-18 20:11:48,812 | INFO     | .. there are 28 such processes running
[2025-11-18 12:12:22] 2025-11-18 20:11:48,812 | INFO     | found 0 job(s) in 20 queues
[2025-11-18 12:12:22] 2025-11-18 20:11:48,812 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-18 12:12:22] 2025-11-18 20:11:48,813 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-18 12:12:22] 2025-11-18 20:12:14,979 | INFO     | [monitor] cgroup control has ended
[2025-11-18 12:12:22] 2025-11-18 20:12:16,818 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140433332930368)>', '<ExcThread(monitor, started 140432797325056)>']
[2025-11-18 12:12:22] 2025-11-18 20:12:16,949 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-18 12:12:22] 2025-11-18 20:12:16,949 | INFO     | [monitor] control thread has ended
[2025-11-18 12:12:22] 2025-11-18 20:12:21,844 | INFO     | all workflow threads have been joined
[2025-11-18 12:12:22] 2025-11-18 20:12:21,844 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-18 12:12:22] 2025-11-18 20:12:21,845 | INFO     | traces error code: 0
[2025-11-18 12:12:22] 2025-11-18 20:12:21,845 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-18 12:12:22] 2025-11-18 20:12:21,945 [wrapper] ==== pilot stdout END ====
[2025-11-18 12:12:22] 2025-11-18 20:12:21,946 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-18 12:12:22] 2025-11-18 20:12:21,948 [wrapper] pilotpid: 2041470
[2025-11-18 12:12:22] 2025-11-18 20:12:21,949 [wrapper] Pilot exit status: 0
[2025-11-18 12:12:22] 2025-11-18 20:12:21,957 [wrapper] pandaids: 6891592059
[2025-11-18 12:12:22] 2025-11-18 20:12:21,998 [wrapper] cleanup supervisor_pilot 2041476 2041471
[2025-11-18 12:12:22] 2025-11-18 20:12:22,000 [wrapper] Test setup, not cleaning
[2025-11-18 12:12:22] 2025-11-18 20:12:22,002 [wrapper] apfmon messages muted
[2025-11-18 12:12:22] 2025-11-18 20:12:22,003 [wrapper] ==== wrapper stdout END ====
[2025-11-18 12:12:22] 2025-11-18 20:12:22,004 [wrapper] ==== wrapper stderr END ====
[2025-11-18 12:12:22]  *** Error codes and diagnostics ***
[2025-11-18 12:12:22]     "exeErrorCode": 65,
[2025-11-18 12:12:22]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-18 12:12:22]     "pilotErrorCode": 1305,
[2025-11-18 12:12:22]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-18 12:12:22]  *** Listing of results directory ***
[2025-11-18 12:12:22] total 402156
[2025-11-18 12:12:22] -rw-r--r--. 1 boinc boinc    576529 Nov 18 09:59 pilot3.tar.gz
[2025-11-18 12:12:22] -rw-r--r--. 1 boinc boinc      5112 Nov 18 10:18 queuedata.json
[2025-11-18 12:12:22] -rwx------. 1 boinc boinc     36292 Nov 18 10:18 runpilot2-wrapper.sh
[2025-11-18 12:12:22] -rw-r--r--. 1 boinc boinc       100 Nov 18 12:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-18 12:12:22] -rwxr-xr-x. 1 boinc boinc      7986 Nov 18 12:08 run_atlas
[2025-11-18 12:12:22] -rw-r--r--. 1 boinc boinc       105 Nov 18 12:08 job.xml
[2025-11-18 12:12:22] -rw-r--r--. 2 boinc boinc 407604506 Nov 18 12:08 EVNT.47493065._000637.pool.root.1
[2025-11-18 12:12:22] -rw-r--r--. 2 boinc boinc     15120 Nov 18 12:08 start_atlas.sh
[2025-11-18 12:12:22] drwxrwx--x. 2 boinc boinc      4096 Nov 18 12:08 shared
[2025-11-18 12:12:22] -rw-r--r--. 2 boinc boinc    590100 Nov 18 12:08 input.tar.gz
[2025-11-18 12:12:22] -rw-r--r--. 1 boinc boinc      6628 Nov 18 12:08 init_data.xml
[2025-11-18 12:12:22] -rw-r--r--. 1 boinc boinc         0 Nov 18 12:08 boinc_lockfile
[2025-11-18 12:12:22] -rw-r--r--. 1 boinc boinc      2773 Nov 18 12:08 pandaJob.out
[2025-11-18 12:12:22] -rw-------. 1 boinc boinc    992790 Nov 18 12:08 agis_schedconf.cvmfs.json
[2025-11-18 12:12:22] -rw-------. 1 boinc boinc   1525063 Nov 18 12:08 agis_ddmendpoints.agis.ALL.json
[2025-11-18 12:12:22] drwx------. 5 boinc boinc      4096 Nov 18 12:08 pilot3
[2025-11-18 12:12:22] -rw-r--r--. 1 boinc boinc       523 Nov 18 12:08 boinc_task_state.xml
[2025-11-18 12:12:22] -rw-------. 1 boinc boinc       965 Nov 18 12:09 memory_monitor_summary.json
[2025-11-18 12:12:22] -rw-------. 1 boinc boinc     47283 Nov 18 12:09 log.47493068._005866.job.log.tgz.1
[2025-11-18 12:12:22] -rw-------. 1 boinc boinc        95 Nov 18 12:11 pilot_heartbeat.json
[2025-11-18 12:12:22] -rw-------. 1 boinc boinc     10302 Nov 18 12:11 heartbeat.json
[2025-11-18 12:12:22] -rw-r--r--. 1 boinc boinc      8192 Nov 18 12:12 boinc_mmap_file
[2025-11-18 12:12:22] -rw-r--r--. 1 boinc boinc        23 Nov 18 12:12 wrapper_checkpoint.txt
[2025-11-18 12:12:22] -rw-------. 1 boinc boinc      5009 Nov 18 12:12 pilotlog.txt
[2025-11-18 12:12:22] -rw-------. 1 boinc boinc     91188 Nov 18 12:12 log.47493068._005866.job.log.1
[2025-11-18 12:12:22] -rw-------. 1 boinc boinc       186 Nov 18 12:12 output.list
[2025-11-18 12:12:22] -rw-r--r--. 1 boinc boinc       620 Nov 18 12:12 runtime_log
[2025-11-18 12:12:22] -rw-------. 1 boinc boinc    163840 Nov 18 12:12 result.tar.gz
[2025-11-18 12:12:22] -rw-r--r--. 1 boinc boinc      8528 Nov 18 12:12 runtime_log.err
[2025-11-18 12:12:22] -rw-------. 1 boinc boinc       645 Nov 18 12:12 raaMDm9Sff8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGgFKDmGdhXIo.diag
[2025-11-18 12:12:22] -rw-r--r--. 1 boinc boinc     22219 Nov 18 12:12 stderr.txt
[2025-11-18 12:12:22] No HITS result produced
[2025-11-18 12:12:22]  *** Contents of shared directory: ***
[2025-11-18 12:12:22] total 398812
[2025-11-18 12:12:22] -rw-r--r--. 2 boinc boinc 407604506 Nov 18 12:08 ATLAS.root_0
[2025-11-18 12:12:22] -rw-r--r--. 2 boinc boinc     15120 Nov 18 12:08 start_atlas.sh
[2025-11-18 12:12:22] -rw-r--r--. 2 boinc boinc    590100 Nov 18 12:08 input.tar.gz
[2025-11-18 12:12:22] -rw-------. 1 boinc boinc    163840 Nov 18 12:12 result.tar.gz
12:12:23 (2037799): run_atlas exited; CPU time 34.833906
12:12:23 (2037799): called boinc_finish(0)

</stderr_txt>
]]>

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