Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:09:18 (8164): wrapper (7.7.26015): starting
01:09:18 (8164): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 01:09:18] Arguments: --nthreads 8
[2025-11-21 01:09:18] Threads: 8
[2025-11-21 01:09:18] Checking for CVMFS
[2025-11-21 01:09:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 01:09:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 01:09:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 01:09:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 01:09:20] 2.11.2.0 20118 277282 148504 153101 2 301 24098657 25165825 4495 130560 2 123248202 99.870 73228255 2733 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-21 01:09:20] CVMFS is ok
[2025-11-21 01:09:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 01:09:20] Checking for apptainer binary...
[2025-11-21 01:09:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 01:09:20] Running /usr/bin/apptainer --version
[2025-11-21 01:09:21] apptainer version 1.3.2-1.el7
[2025-11-21 01:09:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 01:09:22] cg-vwn344.simple-grid.lan
[2025-11-21 01:09:22] apptainer works
[2025-11-21 01:09:22] Set ATHENA_PROC_NUMBER=8
[2025-11-21 01:09:22] Set ATHENA_CORE_NUMBER=8
[2025-11-21 01:09:23] Starting ATLAS job with PandaID=6891572089
[2025-11-21 01:09:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 02:23:55]  *** The last 200 lines of the pilot log: ***
[2025-11-22 02:23:55] 2025-11-22 01:23:08,116 | INFO     | time since job start (90677s) is within the limit (172800.0s)
[2025-11-22 02:23:55] 2025-11-22 01:23:09,008 | INFO     | monitor loop #6056: job 0:6891572089 is in state 'finished'
[2025-11-22 02:23:55] 2025-11-22 01:23:09,008 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 02:23:55] 2025-11-22 01:23:10,123 | INFO     | time since job start (90679s) is within the limit (172800.0s)
[2025-11-22 02:23:55] 2025-11-22 01:23:11,519 | INFO     | monitor loop #6057: job 0:6891572089 is in state 'finished'
[2025-11-22 02:23:55] 2025-11-22 01:23:11,519 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 02:23:55] 2025-11-22 01:23:12,130 | INFO     | time since job start (90681s) is within the limit (172800.0s)
[2025-11-22 02:23:55] 2025-11-22 01:23:14,025 | INFO     | monitor loop #6058: job 0:6891572089 is in state 'finished'
[2025-11-22 02:23:55] 2025-11-22 01:23:14,025 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 02:23:55] 2025-11-22 01:23:14,140 | INFO     | time since job start (90683s) is within the limit (172800.0s)
[2025-11-22 02:23:55] 2025-11-22 01:23:16,147 | INFO     | time since job start (90685s) is within the limit (172800.0s)
[2025-11-22 02:23:55] 2025-11-22 01:23:16,530 | INFO     | monitor loop #6059: job 0:6891572089 is in state 'finished'
[2025-11-22 02:23:55] 2025-11-22 01:23:16,530 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 02:23:55] 2025-11-22 01:23:18,118 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 02:23:55] 2025-11-22 01:23:18,119 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-22 02:23:55] 2025-11-22 01:23:18,121 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6891572089/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 02:23:55] 2025-11-22 01:23:18,122 | INFO     | extracted standard info from prmon json
[2025-11-22 02:23:55] 2025-11-22 01:23:18,122 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 02:23:55] 2025-11-22 01:23:18,122 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 02:23:55] 2025-11-22 01:23:18,156 | INFO     | fitting pss+swap vs Time
[2025-11-22 02:23:55] 2025-11-22 01:23:18,158 | INFO     | sum of square deviations: 1011349683751.067
[2025-11-22 02:23:55] 2025-11-22 01:23:18,181 | INFO     | time since job start (90687s) is within the limit (172800.0s)
[2025-11-22 02:23:55] 2025-11-22 01:23:18,231 | INFO     | sum of deviations: 2501883296564.5483
[2025-11-22 02:23:55] 2025-11-22 01:23:18,232 | INFO     | mean x: 1763729257.349292
[2025-11-22 02:23:55] 2025-11-22 01:23:18,232 | INFO     | mean y: 2860868.5684423465
[2025-11-22 02:23:55] 2025-11-22 01:23:18,232 | INFO     | intersect: -4360263814.73399
[2025-11-22 02:23:55] 2025-11-22 01:23:18,234 | INFO     | chi2: 14.681252192798212
[2025-11-22 02:23:55] 2025-11-22 01:23:18,239 | INFO     | sum of square deviations: 1001155302894.4335
[2025-11-22 02:23:55] 2025-11-22 01:23:18,301 | INFO     | sum of deviations: 3005265367190.1
[2025-11-22 02:23:55] 2025-11-22 01:23:18,302 | INFO     | mean x: 1763729104.8538566
[2025-11-22 02:23:55] 2025-11-22 01:23:18,302 | INFO     | mean y: 2868397.9309878214
[2025-11-22 02:23:55] 2025-11-22 01:23:18,302 | INFO     | intersect: -5291489011.552163
[2025-11-22 02:23:55] 2025-11-22 01:23:18,304 | INFO     | chi2: 11.362887597710792
[2025-11-22 02:23:55] 2025-11-22 01:23:18,304 | INFO     | current chi2=11.362887597710792 (change=22.602735458186743 %)
[2025-11-22 02:23:55] 2025-11-22 01:23:18,304 | INFO     | right removable region: 1477
[2025-11-22 02:23:55] 2025-11-22 01:23:18,306 | INFO     | sum of square deviations: 1001154082284.4323
[2025-11-22 02:23:55] 2025-11-22 01:23:18,363 | INFO     | sum of deviations: 2026578241731.7424
[2025-11-22 02:23:55] 2025-11-22 01:23:18,363 | INFO     | mean x: 1763729409.8538566
[2025-11-22 02:23:55] 2025-11-22 01:23:18,363 | INFO     | mean y: 2867974.711772666
[2025-11-22 02:23:55] 2025-11-22 01:23:18,363 | INFO     | intersect: -3567347349.3433194
[2025-11-22 02:23:55] 2025-11-22 01:23:18,365 | INFO     | chi2: 11.94372445080178
[2025-11-22 02:23:55] 2025-11-22 01:23:18,366 | INFO     | current chi2=11.94372445080178 (change=18.646418616385514 %)
[2025-11-22 02:23:55] 2025-11-22 01:23:18,366 | INFO     | left removable region: 10
[2025-11-22 02:23:55] 2025-11-22 01:23:18,368 | INFO     | sum of square deviations: 978967329136.2424
[2025-11-22 02:23:55] 2025-11-22 01:23:18,427 | INFO     | sum of deviations: 2514257721568.608
[2025-11-22 02:23:55] 2025-11-22 01:23:18,428 | INFO     | mean x: 1763729379.3605998
[2025-11-22 02:23:55] 2025-11-22 01:23:18,428 | INFO     | mean y: 2879127.8929788684
[2025-11-22 02:23:55] 2025-11-22 01:23:18,428 | INFO     | intersect: -4526863672.33652
[2025-11-22 02:23:55] 2025-11-22 01:23:18,430 | INFO     | chi2: 7.719608626076226
[2025-11-22 02:23:55] 2025-11-22 01:23:18,430 | INFO     | current memory leak: 2.57 B/s (using 1467 data points, chi2=7.72)
[2025-11-22 02:23:55] 2025-11-22 01:23:18,432 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-22 02:23:55] 2025-11-22 01:23:18,432 | INFO     | ..............................
[2025-11-22 02:23:55] 2025-11-22 01:23:18,432 | INFO     | . Timing measurements:
[2025-11-22 02:23:55] 2025-11-22 01:23:18,432 | INFO     | . get job = 0 s
[2025-11-22 02:23:55] 2025-11-22 01:23:18,432 | INFO     | . initial setup = 11 s
[2025-11-22 02:23:55] 2025-11-22 01:23:18,433 | INFO     | . payload setup = 11 s
[2025-11-22 02:23:55] 2025-11-22 01:23:18,433 | INFO     | . stage-in = 0 s
[2025-11-22 02:23:55] 2025-11-22 01:23:18,433 | INFO     | . payload execution = 90451 s
[2025-11-22 02:23:55] 2025-11-22 01:23:18,433 | INFO     | . stage-out = 7 s
[2025-11-22 02:23:55] 2025-11-22 01:23:18,433 | INFO     | . log creation = 2 s
[2025-11-22 02:23:55] 2025-11-22 01:23:18,433 | INFO     | ..............................
[2025-11-22 02:23:55] 2025-11-22 01:23:18,553 | INFO     | 
[2025-11-22 02:23:55] 2025-11-22 01:23:18,554 | INFO     | job summary report
[2025-11-22 02:23:55] 2025-11-22 01:23:18,554 | INFO     | --------------------------------------------------
[2025-11-22 02:23:55] 2025-11-22 01:23:18,554 | INFO     | PanDA job id: 6891572089
[2025-11-22 02:23:55] 2025-11-22 01:23:18,554 | INFO     | task id: 47493068
[2025-11-22 02:23:55] 2025-11-22 01:23:18,554 | INFO     | errors: (none)
[2025-11-22 02:23:55] 2025-11-22 01:23:18,554 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 02:23:55] 2025-11-22 01:23:18,554 | INFO     | pilot state: finished 
[2025-11-22 02:23:55] 2025-11-22 01:23:18,554 | INFO     | transexitcode: 0
[2025-11-22 02:23:55] 2025-11-22 01:23:18,555 | INFO     | exeerrorcode: 0
[2025-11-22 02:23:55] 2025-11-22 01:23:18,555 | INFO     | exeerrordiag: 
[2025-11-22 02:23:55] 2025-11-22 01:23:18,555 | INFO     | exitcode: 0
[2025-11-22 02:23:55] 2025-11-22 01:23:18,555 | INFO     | exitmsg: OK
[2025-11-22 02:23:55] 2025-11-22 01:23:18,555 | INFO     | cpuconsumptiontime: 331509 s
[2025-11-22 02:23:55] 2025-11-22 01:23:18,555 | INFO     | nevents: 1000
[2025-11-22 02:23:55] 2025-11-22 01:23:18,555 | INFO     | neventsw: 0
[2025-11-22 02:23:55] 2025-11-22 01:23:18,555 | INFO     | pid: 18550
[2025-11-22 02:23:55] 2025-11-22 01:23:18,555 | INFO     | pgrp: 18550
[2025-11-22 02:23:55] 2025-11-22 01:23:18,555 | INFO     | corecount: 8
[2025-11-22 02:23:55] 2025-11-22 01:23:18,555 | INFO     | event service: False
[2025-11-22 02:23:55] 2025-11-22 01:23:18,555 | INFO     | sizes: {0: 2297968, 1: 2298653, 2: 2298852, 13: 2298852, 24: 2298908, 34: 2298936, 45: 2299092, 56: 2299120, 67: 2299148, 77: 2299176, 88: 2299232, 89: 2299802, 99
[2025-11-22 02:23:55] 2025-11-22 01:23:18,555 | INFO     | --------------------------------------------------
[2025-11-22 02:23:55] 2025-11-22 01:23:18,556 | INFO     | 
[2025-11-22 02:23:55] 2025-11-22 01:23:18,556 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-11-22 02:23:55] 2025-11-22 01:23:19,203 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 02:23:55] 2025-11-22 01:23:19,203 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 02:23:55] 2025-11-22 01:23:19,203 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 02:23:55] 2025-11-22 01:23:19,204 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 02:23:55] 2025-11-22 01:23:19,204 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 02:23:55] 2025-11-22 01:23:19,204 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 02:23:55] 2025-11-22 01:23:19,204 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 02:23:55] 2025-11-22 01:23:19,204 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 02:23:55] 2025-11-22 01:23:19,204 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 02:23:55] 2025-11-22 01:23:19,204 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 02:23:55] 2025-11-22 01:23:19,204 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 02:23:55] 2025-11-22 01:23:19,204 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 02:23:55] 2025-11-22 01:23:19,204 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 02:23:55] 2025-11-22 01:23:19,204 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 02:23:55] 2025-11-22 01:23:19,205 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 02:23:55] 2025-11-22 01:23:19,205 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 02:23:55] 2025-11-22 01:23:19,205 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 02:23:55] 2025-11-22 01:23:19,205 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 02:23:55] 2025-11-22 01:23:19,205 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 02:23:55] 2025-11-22 01:23:19,205 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 02:23:55] 2025-11-22 01:23:19,205 | INFO     | job 6891572089 has completed (purged errors)
[2025-11-22 02:23:55] 2025-11-22 01:23:19,205 | INFO     | overall cleanup function is called
[2025-11-22 02:23:55] 2025-11-22 01:23:19,377 | INFO     | PID=11936 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 02:23:55] 2025-11-22 01:23:19,377 | INFO     | .. there are 9 such processes running
[2025-11-22 02:23:55] 2025-11-22 01:23:20,268 | INFO     | --- collectZombieJob: --- 10, [18550]
[2025-11-22 02:23:55] 2025-11-22 01:23:20,268 | INFO     | zombie collector waiting for pid 18550
[2025-11-22 02:23:55] 2025-11-22 01:23:20,268 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 02:23:55] 2025-11-22 01:23:20,268 | INFO     | collected zombie processes
[2025-11-22 02:23:55] 2025-11-22 01:23:20,268 | INFO     | will attempt to kill all subprocesses of pid=18550
[2025-11-22 02:23:55] 2025-11-22 01:23:20,390 | INFO     | process IDs to be killed: [18550] (in reverse order)
[2025-11-22 02:23:55] 2025-11-22 01:23:21,155 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 02:23:55] 2025-11-22 01:23:21,155 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 02:23:55] 2025-11-22 01:23:21,159 | INFO     | did not find any defunct processes belonging to 18550
[2025-11-22 02:23:55] 2025-11-22 01:23:21,162 | INFO     | did not find any defunct processes belonging to 18550
[2025-11-22 02:23:55] 2025-11-22 01:23:21,165 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 02:23:55] 2025-11-22 01:23:21,165 | INFO     | ready for new job
[2025-11-22 02:23:55] 2025-11-22 01:23:21,165 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 02:23:55] 2025-11-22 01:23:21,173 | INFO     | ***************************************
[2025-11-22 02:23:55] 2025-11-22 01:23:21,173 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 02:23:55] 2025-11-22 01:23:21,173 | INFO     | ***************************************
[2025-11-22 02:23:55] 2025-11-22 01:23:21,173 | INFO     | 
[2025-11-22 02:23:55] 2025-11-22 01:23:21,174 | INFO     | pilot is running in a VM
[2025-11-22 02:23:55] 2025-11-22 01:23:21,174 | INFO     | architecture information:
[2025-11-22 02:23:55] 2025-11-22 01:23:21,175 | INFO     | executing command: cat /etc/os-release
[2025-11-22 02:23:55] 2025-11-22 01:23:21,198 | INFO     | cat /etc/os-release:
[2025-11-22 02:23:55] NAME="CentOS Linux"
[2025-11-22 02:23:55] VERSION="7 (Core)"
[2025-11-22 02:23:55] ID="centos"
[2025-11-22 02:23:55] ID_LIKE="rhel fedora"
[2025-11-22 02:23:55] VERSION_ID="7"
[2025-11-22 02:23:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 02:23:55] ANSI_COLOR="0;31"
[2025-11-22 02:23:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 02:23:55] HOME_URL="https://www.centos.org/"
[2025-11-22 02:23:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 02:23:55] 
[2025-11-22 02:23:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 02:23:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 02:23:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 02:23:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 02:23:55] 
[2025-11-22 02:23:55] 2025-11-22 01:23:21,199 | INFO     | ***************************************
[2025-11-22 02:23:55] 2025-11-22 01:23:21,701 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-11-22 02:23:55] 2025-11-22 01:23:21,746 | INFO     | sufficient remaining disk space (493699989504 B)
[2025-11-22 02:23:55] 2025-11-22 01:23:21,746 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 02:23:55] 2025-11-22 01:23:21,746 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 02:23:55] 2025-11-22 01:23:21,747 | INFO     | update_server=False
[2025-11-22 02:23:55] 2025-11-22 01:23:21,747 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 02:23:55] 2025-11-22 01:23:21,747 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 02:23:55] 2025-11-22 01:23:22,127 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 02:23:55] 2025-11-22 01:23:22,454 | INFO     | all data control threads have been joined
[2025-11-22 02:23:55] 2025-11-22 01:23:22,461 | INFO     | all payload control threads have been joined
[2025-11-22 02:23:55] 2025-11-22 01:23:22,557 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 02:23:55] 2025-11-22 01:23:22,557 | INFO     | aborting loop
[2025-11-22 02:23:55] 2025-11-22 01:23:22,753 | INFO     | [job] retrieve thread has finished
[2025-11-22 02:23:55] 2025-11-22 01:23:22,784 | INFO     | [payload] validate_post thread has finished
[2025-11-22 02:23:55] 2025-11-22 01:23:23,048 | INFO     | [payload] failed_post thread has finished
[2025-11-22 02:23:55] 2025-11-22 01:23:23,221 | INFO     | all job control threads have been joined
[2025-11-22 02:23:55] 2025-11-22 01:23:23,393 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 02:23:55] 2025-11-22 01:23:23,460 | INFO     | [data] control thread has finished
[2025-11-22 02:23:55] 2025-11-22 01:23:23,467 | INFO     | [payload] control thread has finished
[2025-11-22 02:23:55] 2025-11-22 01:23:23,563 | INFO     | [job] job monitor thread has finished
[2025-11-22 02:23:55] 2025-11-22 01:23:23,570 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 02:23:55] 2025-11-22 01:23:23,717 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 02:23:55] 2025-11-22 01:23:23,755 | INFO     | [data] copytool_out thread has finished
[2025-11-22 02:23:55] 2025-11-22 01:23:24,078 | INFO     | [job] validate thread has finished
[2025-11-22 02:23:55] 2025-11-22 01:23:24,175 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 02:23:55] 2025-11-22 01:23:24,208 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 02:23:55] 2025-11-22 01:23:24,227 | INFO     | [job] control thread has finished
[2025-11-22 02:23:55] 2025-11-22 01:23:24,255 | INFO     | [data] copytool_in thread has finished
[2025-11-22 02:23:55] 2025-11-22 01:23:24,576 | INFO     | [job] queue monitor thread has finished
[2025-11-22 02:23:55] 2025-11-22 01:23:26,136 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 02:23:55] 2025-11-22 01:23:29,359 | INFO     | [monitor] cgroup control has ended
[2025-11-22 02:23:55] 2025-11-22 01:23:29,742 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140365199984448)>', '<ExcThread(monitor, started 140364606326528)>']
[2025-11-22 02:23:55] 2025-11-22 01:23:34,768 | INFO     | all workflow threads have been joined
[2025-11-22 02:23:55] 2025-11-22 01:23:34,768 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 02:23:55] 2025-11-22 01:23:34,768 | INFO     | traces error code: 0
[2025-11-22 02:23:55] 2025-11-22 01:23:34,768 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 02:23:55] 2025-11-22 01:23:51,554 | INFO     | PID=11936 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 02:23:55] 2025-11-22 01:23:51,554 | INFO     | .. there are 9 such processes running
[2025-11-22 02:23:55] 2025-11-22 01:23:51,555 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 02:23:55] 2025-11-22 01:23:51,555 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 02:23:55] 2025-11-22 01:23:51,555 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 02:23:55] 2025-11-22 01:23:51,555 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 02:23:55] 2025-11-22 01:23:51,556 | INFO     | [monitor] control thread has ended
[2025-11-22 02:23:55] 2025-11-22 01:23:51,983 [wrapper] ==== pilot stdout END ====
[2025-11-22 02:23:55] 2025-11-22 01:23:52,122 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 02:23:55] 2025-11-22 01:23:52,177 [wrapper] pilotpid: 11936
[2025-11-22 02:23:55] 2025-11-22 01:23:52,200 [wrapper] Pilot exit status: 0
[2025-11-22 02:23:55] 2025-11-22 01:23:52,541 [wrapper] pandaids: 6891572089
[2025-11-22 02:23:55] 2025-11-22 01:23:53,090 [wrapper] cleanup supervisor_pilot 22294 11937
[2025-11-22 02:23:55] 2025-11-22 01:23:53,146 [wrapper] Test setup, not cleaning
[2025-11-22 02:23:55] 2025-11-22 01:23:53,199 [wrapper] apfmon messages muted
[2025-11-22 02:23:55] 2025-11-22 01:23:53,272 [wrapper] ==== wrapper stdout END ====
[2025-11-22 02:23:55] 2025-11-22 01:23:53,380 [wrapper] ==== wrapper stderr END ====
[2025-11-22 02:23:55]  *** Error codes and diagnostics ***
[2025-11-22 02:23:55]     "exeErrorCode": 0,
[2025-11-22 02:23:55]     "exeErrorDiag": "",
[2025-11-22 02:23:55]     "pilotErrorCode": 0,
[2025-11-22 02:23:55]     "pilotErrorDiag": "",
[2025-11-22 02:23:55]  *** Listing of results directory ***
[2025-11-22 02:23:55] total 1327276
[2025-11-22 02:23:55] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:47 pilot3.tar.gz
[2025-11-22 02:23:55] -rw-r--r--. 1 boinc boinc      5112 Nov 18 17:14 queuedata.json
[2025-11-22 02:23:55] -rwx------. 1 boinc boinc     36292 Nov 18 17:16 runpilot2-wrapper.sh
[2025-11-22 02:23:55] -rw-r--r--. 1 boinc boinc       100 Nov 21 01:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 02:23:55] -rwxr-xr-x. 1 boinc boinc      7986 Nov 21 01:09 run_atlas
[2025-11-22 02:23:55] -rw-r--r--. 1 boinc boinc       105 Nov 21 01:09 job.xml
[2025-11-22 02:23:55] -rw-r--r--. 1 boinc boinc      6390 Nov 21 01:09 init_data.xml
[2025-11-22 02:23:55] -rw-r--r--. 2 boinc boinc 410371345 Nov 21 01:09 EVNT.47493065._000327.pool.root.1
[2025-11-22 02:23:55] -rw-r--r--. 2 boinc boinc     15120 Nov 21 01:09 start_atlas.sh
[2025-11-22 02:23:55] drwxrwx--x. 2 boinc boinc        68 Nov 21 01:09 shared
[2025-11-22 02:23:55] -rw-r--r--. 2 boinc boinc    590093 Nov 21 01:09 input.tar.gz
[2025-11-22 02:23:55] -rw-r--r--. 1 boinc boinc         0 Nov 21 01:09 boinc_lockfile
[2025-11-22 02:23:55] -rw-r--r--. 1 boinc boinc      2773 Nov 21 01:09 pandaJob.out
[2025-11-22 02:23:55] -rw-------. 1 boinc boinc    989817 Nov 21 01:11 agis_schedconf.cvmfs.json
[2025-11-22 02:23:55] drwx------. 5 boinc boinc      4096 Nov 21 01:11 pilot3
[2025-11-22 02:23:55] -rw-r--r--. 1 boinc boinc       533 Nov 22 01:56 boinc_task_state.xml
[2025-11-22 02:23:55] -rw-------. 1 boinc boinc 915561498 Nov 22 02:20 HITS.47493068._003262.pool.root.1
[2025-11-22 02:23:55] -rw-------. 1 boinc boinc      1033 Nov 22 02:21 memory_monitor_summary.json
[2025-11-22 02:23:55] -rw-------. 1 boinc boinc   1526164 Nov 22 02:21 agis_ddmendpoints.agis.ALL.json
[2025-11-22 02:23:55] -rw-------. 1 boinc boinc   2554428 Nov 22 02:21 log.47493068._003262.job.log.tgz.1
[2025-11-22 02:23:55] -rw-------. 1 boinc boinc      8626 Nov 22 02:23 heartbeat.json
[2025-11-22 02:23:55] -rw-r--r--. 1 boinc boinc      8192 Nov 22 02:23 boinc_mmap_file
[2025-11-22 02:23:55] -rw-r--r--. 1 boinc boinc        29 Nov 22 02:23 wrapper_checkpoint.txt
[2025-11-22 02:23:55] -rw-------. 1 boinc boinc        95 Nov 22 02:23 pilot_heartbeat.json
[2025-11-22 02:23:55] -rw-------. 1 boinc boinc       820 Nov 22 02:23 pilotlog.txt
[2025-11-22 02:23:55] -rw-------. 1 boinc boinc  12093556 Nov 22 02:23 log.47493068._003262.job.log.1
[2025-11-22 02:23:55] -rw-------. 1 boinc boinc       353 Nov 22 02:23 output.list
[2025-11-22 02:23:55] -rw-r--r--. 1 boinc boinc       620 Nov 22 02:23 runtime_log
[2025-11-22 02:23:55] -rw-------. 1 boinc boinc  14663680 Nov 22 02:23 result.tar.gz
[2025-11-22 02:23:55] -rw-r--r--. 1 boinc boinc      8703 Nov 22 02:23 runtime_log.err
[2025-11-22 02:23:55] -rw-------. 1 boinc boinc       662 Nov 22 02:23 RuaNDmXYdf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmrkFKDmxjMMQm.diag
[2025-11-22 02:23:55] -rw-r--r--. 1 boinc boinc     21501 Nov 22 02:23 stderr.txt
[2025-11-22 02:23:55] HITS file was successfully produced:
[2025-11-22 02:23:55] -rw-------. 1 boinc boinc 915561498 Nov 22 02:20 shared/HITS.pool.root.1
[2025-11-22 02:23:55]  *** Contents of shared directory: ***
[2025-11-22 02:23:55] total 1309776
[2025-11-22 02:23:55] -rw-r--r--. 2 boinc boinc 410371345 Nov 21 01:09 ATLAS.root_0
[2025-11-22 02:23:55] -rw-r--r--. 2 boinc boinc     15120 Nov 21 01:09 start_atlas.sh
[2025-11-22 02:23:55] -rw-r--r--. 2 boinc boinc    590093 Nov 21 01:09 input.tar.gz
[2025-11-22 02:23:55] -rw-------. 1 boinc boinc 915561498 Nov 22 02:20 HITS.pool.root.1
[2025-11-22 02:23:55] -rw-------. 1 boinc boinc  14663680 Nov 22 02:23 result.tar.gz
02:23:57 (8164): run_atlas exited; CPU time 332017.649299
02:23:57 (8164): called boinc_finish(0)

</stderr_txt>
]]>

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