Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-21 12:43:29 (25288): vboxwrapper version 26210
2025-11-21 12:43:29 (25288): BOINC client version: 8.0.4
2025-11-21 12:43:30 (25288): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-11-21 12:43:30 (25288): Successfully copied 'init_data.xml' to the shared directory.
2025-11-21 12:43:31 (25288): Create VM. (boinc_55ce66a163e1832a, slot#1)
2025-11-21 12:43:31 (25288): Setting Memory Size for VM. (4600MB)
2025-11-21 12:43:31 (25288): Setting CPU Count for VM. (6)
2025-11-21 12:43:32 (25288): Setting Chipset Options for VM.
2025-11-21 12:43:32 (25288): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-21 12:43:32 (25288): Setting Boot Options for VM.
2025-11-21 12:43:33 (25288): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-21 12:43:33 (25288): Enabling VM Network Access.
2025-11-21 12:43:33 (25288): Disabling USB Support for VM.
2025-11-21 12:43:33 (25288): Disabling COM Port Support for VM.
2025-11-21 12:43:34 (25288): Disabling LPT Port Support for VM.
2025-11-21 12:43:34 (25288): Disabling Audio Support for VM.
2025-11-21 12:43:34 (25288): Disabling Clipboard Support for VM.
2025-11-21 12:43:34 (25288): Disabling Drag and Drop Support for VM.
2025-11-21 12:43:35 (25288): Adding storage controller(s) to VM.
2025-11-21 12:43:35 (25288): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-21 12:43:37 (25288): Adding VirtualBox Guest Additions to VM.
2025-11-21 12:43:37 (25288): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-21 12:43:37 (25288): forwarding host port 53454 to guest port 80
2025-11-21 12:43:38 (25288): Enabling remote desktop for VM.
2025-11-21 12:43:38 (25288): Required extension pack not installed, remote desktop not enabled.
2025-11-21 12:43:38 (25288): Enabling shared directory for VM.
2025-11-21 12:43:38 (25288): Starting VM using VBoxManage interface. (boinc_55ce66a163e1832a, slot#1)
2025-11-21 12:43:43 (25288): Successfully started VM. (PID = '24700')
2025-11-21 12:43:43 (25288): Reporting VM Process ID to BOINC.
2025-11-21 12:43:43 (25288): Guest Log: BIOS: VirtualBox 7.0.6
2025-11-21 12:43:43 (25288): Guest Log: CPUID EDX: 0x178bfbff
2025-11-21 12:43:43 (25288): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-21 12:43:43 (25288): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-21 12:43:43 (25288): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-21 12:43:43 (25288): Detected: Web Application Enabled (http://localhost:53454)
2025-11-21 12:43:43 (25288): Preference change detected
2025-11-21 12:43:43 (25288): Setting CPU throttle for VM. (80%)
2025-11-21 12:43:43 (25288): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-21 12:43:45 (25288): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-21 12:43:45 (25288): Guest Log: BIOS: Booting from Hard Disk...
2025-11-21 12:43:48 (25288): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-21 12:43:48 (25288): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-21 12:43:48 (25288): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-21 12:43:48 (25288): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-21 12:43:48 (25288): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-21 12:43:48 (25288): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-21 12:43:48 (25288): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-21 12:43:48 (25288): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-21 12:43:48 (25288): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-21 12:43:48 (25288): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-21 12:43:48 (25288): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-21 12:43:48 (25288): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-21 12:43:48 (25288): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-21 12:43:48 (25288): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-21 12:43:48 (25288): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-21 12:43:48 (25288): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-21 12:43:48 (25288): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-21 12:43:48 (25288): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-21 12:43:48 (25288): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-21 12:43:48 (25288): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-21 12:43:48 (25288): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-21 12:43:48 (25288): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-21 12:43:48 (25288): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-21 12:43:48 (25288): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-21 12:43:48 (25288): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-21 12:43:48 (25288): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-21 12:43:48 (25288): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-21 12:43:48 (25288): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-21 12:43:48 (25288): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-21 12:43:48 (25288): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-21 12:43:48 (25288): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-21 12:43:48 (25288): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-21 12:44:53 (25288): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-21 12:44:53 (25288): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-21 12:44:56 (25288): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-21 12:44:56 (25288): Guest Log: 00:00:00.000088 main     Log opened 2025-11-21T12:44:54.668821000Z
2025-11-21 12:44:56 (25288): Guest Log: 00:00:00.000153 main     OS Product: Linux
2025-11-21 12:44:56 (25288): Guest Log: 00:00:00.000186 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-21 12:44:56 (25288): Guest Log: 00:00:00.000202 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-21 12:44:56 (25288): Guest Log: 00:00:00.000217 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-21 12:44:56 (25288): Guest Log: 00:00:00.000217 main     Process ID: 1337
2025-11-21 12:44:56 (25288): Guest Log: 00:00:00.000218 main     Package type: LINUX_64BITS_GENERIC
2025-11-21 12:44:56 (25288): Guest Log: 00:00:00.000791 main     5.2.32 r132073 started. Verbose level = 0
2025-11-21 12:44:56 (25288): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-21 12:44:56 (25288): Guest Log: [INFO] Mounting shared directory
2025-11-21 12:44:56 (25288): Guest Log: [INFO] Checking for init_data.xml
2025-11-21 12:45:06 (25288): Guest Log: 00:00:10.007119 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 009 282 858 000ns (GuestNow=1 763 747 103 953 181 000 ns GuestLast=1 763 729 094 670 323 000 ns fSetTimeLastLoop=true )
2025-11-21 12:45:45 (25288): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-21 12:45:45 (25288): Guest Log: [INFO] Detected branch: prod
2025-11-21 12:45:46 (25288): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-21 12:45:46 (25288): Guest Log: Copying input files
2025-11-21 12:45:47 (25288): Guest Log: Copied input files into RunAtlas.
2025-11-21 12:45:47 (25288): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-21 12:45:47 (25288): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-21 12:45:47 (25288): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-21 12:45:47 (25288): Guest Log: Further information can be found at the LHC@home message board.
2025-11-21 12:45:56 (25288): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-21 12:45:56 (25288): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-21 12:45:56 (25288): Guest Log: 2.6.3.0 1643 0 32204 153138 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-21 12:45:56 (25288): Guest Log: copied the webapp to /var/www
2025-11-21 12:45:56 (25288): Guest Log: ATHENA_PROC_NUMBER=6
2025-11-21 12:45:56 (25288): Guest Log: ATHENA_CORE_NUMBER=6
2025-11-21 12:45:56 (25288): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-21 12:45:56 (25288): Guest Log:  *** Starting ATLAS job. (PandaID=6891572155 taskID=47493068) ***
2025-11-21 14:23:47 (25288): Status Report: Elapsed Time: '6000.000000'
2025-11-21 14:23:47 (25288): Status Report: CPU Time: '29684.203125'
2025-11-21 16:03:50 (25288): Status Report: Elapsed Time: '12000.000000'
2025-11-21 16:03:50 (25288): Status Report: CPU Time: '62063.343750'
2025-11-21 17:43:54 (25288): Status Report: Elapsed Time: '18000.000000'
2025-11-21 17:43:54 (25288): Status Report: CPU Time: '94447.562500'
2025-11-21 18:29:48 (25288): VM state change detected. (old = 'running', new = 'paused')
2025-11-21 19:32:43 (25288): VM state change detected. (old = 'paused', new = 'running')
2025-11-21 19:32:48 (25288): Guest Log: 05:44:48.870317 timesync vgsvcTimeSyncWorker: Radical host time change: 3 783 786 000 000ns (HostNow=1 763 771 533 032 000 000 ns HostLast=1 763 767 749 246 000 000 ns)
2025-11-21 19:32:58 (25288): Guest Log: 05:44:58.870639 timesync vgsvcTimeSyncWorker: Radical guest time change: 3 760 215 782 000ns (GuestNow=1 763 771 543 032 406 000 ns GuestLast=1 763 767 782 816 624 000 ns fSetTimeLastLoop=true )
2025-11-21 20:26:52 (25288): Status Report: Elapsed Time: '24000.000000'
2025-11-21 20:26:52 (25288): Status Report: CPU Time: '126837.796875'
2025-11-21 21:25:27 (25288): Guest Log:  *** Job finished ***
2025-11-21 21:25:27 (25288): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-21 21:25:27 (25288): Guest Log: 2025-11-22 02:24:49,813 | INFO     | all workflow threads have been joined
2025-11-21 21:25:27 (25288): Guest Log: 2025-11-22 02:24:49,813 | INFO     | end of generic workflow (traces error code: 0)
2025-11-21 21:25:27 (25288): Guest Log: 2025-11-22 02:24:49,813 | INFO     | traces error code: 0
2025-11-21 21:25:27 (25288): Guest Log: 2025-11-22 02:24:49,813 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-21 21:25:27 (25288): Guest Log: 2025-11-22 02:24:52,164 | INFO     | PID=6055 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-21 21:25:27 (25288): Guest Log: 2025-11-22 02:24:52,165 | INFO     | found 0 job(s) in 20 queues
2025-11-21 21:25:27 (25288): Guest Log: 2025-11-22 02:24:52,165 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-21 21:25:27 (25288): Guest Log: 2025-11-22 02:24:52,165 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-21 21:25:27 (25288): Guest Log: 2025-11-22 02:24:52,165 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-21 21:25:27 (25288): Guest Log: 2025-11-22 02:24:52,165 | INFO     | [monitor] control thread has ended
2025-11-21 21:25:27 (25288): Guest Log: 2025-11-22 02:24:52,236 [wrapper] ==== pilot stdout END ====
2025-11-21 21:25:27 (25288): Guest Log: 2025-11-22 02:24:52,239 [wrapper] ==== wrapper stdout RESUME ====
2025-11-21 21:25:27 (25288): Guest Log: 2025-11-22 02:24:52,242 [wrapper] pilotpid: 6055
2025-11-21 21:25:27 (25288): Guest Log: 2025-11-22 02:24:52,245 [wrapper] Pilot exit status: 0
2025-11-21 21:25:27 (25288): Guest Log: 2025-11-22 02:24:52,255 [wrapper] pandaids: 6891572155
2025-11-21 21:25:27 (25288): Guest Log: 2025-11-22 02:24:52,273 [wrapper] cleanup supervisor_pilot  6920 6056
2025-11-21 21:25:27 (25288): Guest Log: 2025-11-22 02:24:52,276 [wrapper] Test setup, not cleaning
2025-11-21 21:25:27 (25288): Guest Log: 2025-11-22 02:24:52,279 [wrapper] apfmon messages muted
2025-11-21 21:25:27 (25288): Guest Log: 2025-11-22 02:24:52,282 [wrapper] ==== wrapper stdout END ====
2025-11-21 21:25:27 (25288): Guest Log: 2025-11-22 02:24:52,284 [wrapper] ==== wrapper stderr END ====
2025-11-21 21:25:27 (25288): Guest Log:  *** Error codes and diagnostics ***
2025-11-21 21:25:27 (25288): Guest Log:     "exeErrorCode": 0,
2025-11-21 21:25:27 (25288): Guest Log:     "exeErrorDiag": "",
2025-11-21 21:25:27 (25288): Guest Log:     "pilotErrorCode": 0,
2025-11-21 21:25:27 (25288): Guest Log:     "pilotErrorDiag": "",
2025-11-21 21:25:27 (25288): Guest Log:  *** Listing of results directory ***
2025-11-21 21:25:27 (25288): Guest Log: total 917640
2025-11-21 21:25:27 (25288): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 18 15:47 pilot3.tar.gz
2025-11-21 21:25:27 (25288): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 18 16:20 queuedata.json
2025-11-21 21:25:27 (25288): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 18 16:21 runpilot2-wrapper.sh
2025-11-21 21:25:27 (25288): Guest Log: -rwxr-xr-x. 1 atlas atlas      8891 Nov 21 17:45 init_data.xml
2025-11-21 21:25:27 (25288): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Nov 21 17:45 start_atlas.sh
2025-11-21 21:25:27 (25288): Guest Log: -rwxr-xr-x. 1 atlas atlas    590102 Nov 21 17:45 input.tar.gz
2025-11-21 21:25:27 (25288): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 21 17:45 EVNT.47493065._000333.pool.root.1 -> /data/./ATLAS.root_0
2025-11-21 21:25:27 (25288): Guest Log: -rw-r--r--. 1 atlas atlas      2773 Nov 21 17:45 pandaJob.out
2025-11-21 21:25:27 (25288): Guest Log: -rw-------. 1 atlas atlas    989798 Nov 21 17:46 agis_schedconf.cvmfs.json
2025-11-21 21:25:27 (25288): Guest Log: drwx------. 5 atlas atlas      4096 Nov 21 17:46 pilot3
2025-11-21 21:25:27 (25288): Guest Log: -rw-------. 1 atlas atlas 925616277 Nov 22 02:23 HITS.47493068._003323.pool.root.1
2025-11-21 21:25:27 (25288): Guest Log: -rw-------. 1 atlas atlas      1036 Nov 22 02:24 memory_monitor_summary.json
2025-11-21 21:25:27 (25288): Guest Log: -rw-------. 1 atlas atlas   1526164 Nov 22 02:24 agis_ddmendpoints.agis.ALL.json
2025-11-21 21:25:27 (25288): Guest Log: -rw-------. 1 atlas atlas   1503238 Nov 22 02:24 log.47493068._003323.job.log.tgz.1
2025-11-21 21:25:27 (25288): Guest Log: -rw-------. 1 atlas atlas      8633 Nov 22 02:24 heartbeat.json
2025-11-21 21:25:27 (25288): Guest Log: -rw-------. 1 atlas atlas        97 Nov 22 02:24 pilot_heartbeat.json
2025-11-21 21:25:27 (25288): Guest Log: -rw-------. 1 atlas atlas       744 Nov 22 02:24 pilotlog.txt
2025-11-21 21:25:27 (25288): Guest Log: -rw-------. 1 atlas atlas   3593363 Nov 22 02:24 log.47493068._003323.job.log.1
2025-11-21 21:25:27 (25288): Guest Log: -rw-------. 1 atlas atlas       353 Nov 22 02:24 output.list
2025-11-21 21:25:27 (25288): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 22 02:24 runtime_log
2025-11-21 21:25:27 (25288): Guest Log: -rw-------. 1 atlas atlas   5120000 Nov 22 02:24 result.tar.gz
2025-11-21 21:25:27 (25288): Guest Log: -rw-r--r--. 1 atlas atlas      8652 Nov 22 02:24 runtime_log.err
2025-11-21 21:25:27 (25288): Guest Log: -rw-------. 1 atlas atlas       665 Nov 22 02:24 E9GMDmgddf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1lFKDmg3P8pm.diag
2025-11-21 21:25:27 (25288): Guest Log: Looking for outputfile HITS.47493068._003323.pool.root.1
2025-11-21 21:25:27 (25288): Guest Log: HITS file was successfully produced
2025-11-21 21:25:27 (25288): Guest Log: -rw-------. 1 atlas atlas 925616277 Nov 22 02:23 /home/atlas/RunAtlas/HITS.47493068._003323.pool.root.1
2025-11-21 21:25:29 (25288): Guest Log: Successfully finished the ATLAS job!
2025-11-21 21:25:29 (25288): Guest Log: Copying the results back to the shared directory!
2025-11-21 21:25:29 (25288): Guest Log:  *** Contents of shared directory: ***
2025-11-21 21:25:29 (25288): Guest Log: total 1307388
2025-11-21 21:25:29 (25288): Guest Log: -rwxrwxrwx. 1 root root 407403883 Nov 21 17:43 ATLAS.root_0
2025-11-21 21:25:29 (25288): Guest Log: -rwxrwxrwx. 1 root root 925616277 Nov 22  2025 HITS.pool.root.1
2025-11-21 21:25:29 (25288): Guest Log: -rwxrwxrwx. 1 root root      8891 Nov 21 17:43 init_data.xml
2025-11-21 21:25:29 (25288): Guest Log: -rwxrwxrwx. 1 root root    590102 Nov 18 19:42 input.tar.gz
2025-11-21 21:25:29 (25288): Guest Log: -rwxrwxrwx. 1 root root   5120000 Nov 22  2025 result.tar.gz
2025-11-21 21:25:29 (25288): Guest Log: -rwxrwxrwx. 1 root root     15120 Nov 18 19:42 start_atlas.sh
2025-11-21 21:25:29 (25288): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-21 21:25:29 (25288): VM Completion File Detected.
2025-11-21 21:25:29 (25288): Powering off VM.
2025-11-21 21:25:30 (25288): Successfully stopped VM.
2025-11-21 21:25:30 (25288): Deregistering VM. (boinc_55ce66a163e1832a, slot#1)
2025-11-21 21:25:30 (25288): Removing network bandwidth throttle group from VM.
2025-11-21 21:25:30 (25288): Removing VM from VirtualBox.
2025-11-21 21:25:36 (25288): called boinc_finish(0)

</stderr_txt>
]]>

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