Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:52:38 (18597): wrapper (7.7.26015): starting
22:52:38 (18597): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 22:52:38] Arguments: --nthreads 8
[2025-11-19 22:52:38] Threads: 8
[2025-11-19 22:52:38] Checking for CVMFS
[2025-11-19 22:52:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 22:52:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 22:52:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 22:52:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 22:52:40] 2.11.2.0 31313 275680 142148 153057 0 250 15511505 25165825 4523 130560 2 124649591 99.856 83721097 3124 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 22:52:40] CVMFS is ok
[2025-11-19 22:52:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 22:52:40] Checking for apptainer binary...
[2025-11-19 22:52:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 22:52:40] Running /usr/bin/apptainer --version
[2025-11-19 22:52:40] apptainer version 1.3.2-1.el7
[2025-11-19 22:52:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 22:52:47] cg-vwn451.simple-grid.lan
[2025-11-19 22:52:47] apptainer works
[2025-11-19 22:52:47] Set ATHENA_PROC_NUMBER=8
[2025-11-19 22:52:47] Set ATHENA_CORE_NUMBER=8
[2025-11-19 22:52:47] Starting ATLAS job with PandaID=6891572043
[2025-11-19 22:52:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/26 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 00:33:21]  *** The last 200 lines of the pilot log: ***
[2025-11-21 00:33:21] 2025-11-20 23:32:39,676 | INFO     | time since job start (92185s) is within the limit (172800.0s)
[2025-11-21 00:33:21] 2025-11-20 23:32:40,841 | INFO     | PID=22380 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 00:33:21] 2025-11-20 23:32:40,841 | INFO     | .. there are 9 such processes running
[2025-11-21 00:33:21] 2025-11-20 23:32:41,677 | INFO     | monitor loop #6201: job 0:6891572043 is in state 'finished'
[2025-11-21 00:33:21] 2025-11-20 23:32:41,677 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 00:33:21] 2025-11-20 23:32:41,842 | INFO     | time since job start (92187s) is within the limit (172800.0s)
[2025-11-21 00:33:21] 2025-11-20 23:32:43,852 | INFO     | time since job start (92189s) is within the limit (172800.0s)
[2025-11-21 00:33:21] 2025-11-20 23:32:44,008 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 00:33:21] 2025-11-20 23:32:44,010 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-21 00:33:21] 2025-11-20 23:32:44,011 | INFO     | using path: /var/lib/boinc/slots/26/PanDA_Pilot-6891572043/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 00:33:21] 2025-11-20 23:32:44,012 | INFO     | extracted standard info from prmon json
[2025-11-21 00:33:21] 2025-11-20 23:32:44,013 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 00:33:21] 2025-11-20 23:32:44,013 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 00:33:21] 2025-11-20 23:32:44,048 | INFO     | fitting pss+swap vs Time
[2025-11-21 00:33:21] 2025-11-20 23:32:44,050 | INFO     | sum of square deviations: 1048628640614.8945
[2025-11-21 00:33:21] 2025-11-20 23:32:44,117 | INFO     | sum of deviations: 4454951122688.222
[2025-11-21 00:33:21] 2025-11-20 23:32:44,118 | INFO     | mean x: 1763635657.20986
[2025-11-21 00:33:21] 2025-11-20 23:32:44,118 | INFO     | mean y: 2859912.5389740174
[2025-11-21 00:33:21] 2025-11-20 23:32:44,118 | INFO     | intersect: -7489697840.311371
[2025-11-21 00:33:21] 2025-11-20 23:32:44,126 | INFO     | chi2: 18.049977301399032
[2025-11-21 00:33:21] 2025-11-20 23:32:44,129 | INFO     | sum of square deviations: 1038184794007.5508
[2025-11-21 00:33:21] 2025-11-20 23:32:44,201 | INFO     | sum of deviations: 4933307877105.165
[2025-11-21 00:33:21] 2025-11-20 23:32:44,201 | INFO     | mean x: 1763635504.7139037
[2025-11-21 00:33:21] 2025-11-20 23:32:44,201 | INFO     | mean y: 2866898.0354278074
[2025-11-21 00:33:21] 2025-11-20 23:32:44,201 | INFO     | intersect: -8377680551.674344
[2025-11-21 00:33:21] 2025-11-20 23:32:44,203 | INFO     | chi2: 15.189033176130868
[2025-11-21 00:33:21] 2025-11-20 23:32:44,203 | INFO     | current chi2=15.189033176130868 (change=15.850125889335137 %)
[2025-11-21 00:33:21] 2025-11-20 23:32:44,203 | INFO     | right removable region: 1495
[2025-11-21 00:33:21] 2025-11-20 23:32:44,205 | INFO     | sum of square deviations: 1038183686247.5502
[2025-11-21 00:33:21] 2025-11-20 23:32:44,221 | INFO     | monitor loop #6202: job 0:6891572043 is in state 'finished'
[2025-11-21 00:33:21] 2025-11-20 23:32:44,221 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 00:33:21] 2025-11-20 23:32:44,286 | INFO     | sum of deviations: 3813405521304.6587
[2025-11-21 00:33:21] 2025-11-20 23:32:44,287 | INFO     | mean x: 1763635809.7139037
[2025-11-21 00:33:21] 2025-11-20 23:32:44,287 | INFO     | mean y: 2869279.155748663
[2025-11-21 00:33:21] 2025-11-20 23:32:44,287 | INFO     | intersect: -6475231488.0046
[2025-11-21 00:33:21] 2025-11-20 23:32:44,289 | INFO     | chi2: 13.173558805848087
[2025-11-21 00:33:21] 2025-11-20 23:32:44,289 | INFO     | current chi2=13.173558805848087 (change=27.016202924382515 %)
[2025-11-21 00:33:21] 2025-11-20 23:32:44,291 | INFO     | sum of square deviations: 1027808314580.1576
[2025-11-21 00:33:21] 2025-11-20 23:32:44,358 | INFO     | sum of deviations: 3277784135957.252
[2025-11-21 00:33:21] 2025-11-20 23:32:44,358 | INFO     | mean x: 1763635962.2179744
[2025-11-21 00:33:21] 2025-11-20 23:32:44,359 | INFO     | mean y: 2877152.5499664657
[2025-11-21 00:33:21] 2025-11-20 23:32:44,359 | INFO     | intersect: -5621535392.626948
[2025-11-21 00:33:21] 2025-11-20 23:32:44,363 | INFO     | chi2: 9.8855093034823
[2025-11-21 00:33:21] 2025-11-20 23:32:44,363 | INFO     | current chi2=9.8855093034823 (change=24.959462745223686 %)
[2025-11-21 00:33:21] 2025-11-20 23:32:44,363 | INFO     | left removable region: 20
[2025-11-21 00:33:21] 2025-11-20 23:32:44,365 | INFO     | sum of square deviations: 995073883342.9158
[2025-11-21 00:33:21] 2025-11-20 23:32:44,502 | INFO     | sum of deviations: 3330917812054.5303
[2025-11-21 00:33:21] 2025-11-20 23:32:44,502 | INFO     | mean x: 1763636084.2271187
[2025-11-21 00:33:21] 2025-11-20 23:32:44,502 | INFO     | mean y: 2894085.1566101694
[2025-11-21 00:33:21] 2025-11-20 23:32:44,502 | INFO     | intersect: -5900714626.991424
[2025-11-21 00:33:21] 2025-11-20 23:32:44,508 | INFO     | chi2: 4.013224840016391
[2025-11-21 00:33:21] 2025-11-20 23:32:44,509 | INFO     | current memory leak: 3.35 B/s (using 1475 data points, chi2=4.01)
[2025-11-21 00:33:21] 2025-11-20 23:32:44,512 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-21 00:33:21] 2025-11-20 23:32:44,516 | INFO     | ..............................
[2025-11-21 00:33:21] 2025-11-20 23:32:44,517 | INFO     | . Timing measurements:
[2025-11-21 00:33:21] 2025-11-20 23:32:44,517 | INFO     | . get job = 0 s
[2025-11-21 00:33:21] 2025-11-20 23:32:44,517 | INFO     | . initial setup = 8 s
[2025-11-21 00:33:21] 2025-11-20 23:32:44,517 | INFO     | . payload setup = 170 s
[2025-11-21 00:33:21] 2025-11-20 23:32:44,517 | INFO     | . stage-in = 0 s
[2025-11-21 00:33:21] 2025-11-20 23:32:44,517 | INFO     | . payload execution = 91723 s
[2025-11-21 00:33:21] 2025-11-20 23:32:44,517 | INFO     | . stage-out = 5 s
[2025-11-21 00:33:21] 2025-11-20 23:32:44,517 | INFO     | . log creation = 1 s
[2025-11-21 00:33:21] 2025-11-20 23:32:44,517 | INFO     | ..............................
[2025-11-21 00:33:21] 2025-11-20 23:32:44,671 | INFO     | 
[2025-11-21 00:33:21] 2025-11-20 23:32:44,671 | INFO     | job summary report
[2025-11-21 00:33:21] 2025-11-20 23:32:44,672 | INFO     | --------------------------------------------------
[2025-11-21 00:33:21] 2025-11-20 23:32:44,672 | INFO     | PanDA job id: 6891572043
[2025-11-21 00:33:21] 2025-11-20 23:32:44,672 | INFO     | task id: 47493068
[2025-11-21 00:33:21] 2025-11-20 23:32:44,672 | INFO     | errors: (none)
[2025-11-21 00:33:21] 2025-11-20 23:32:44,672 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 00:33:21] 2025-11-20 23:32:44,672 | INFO     | pilot state: finished 
[2025-11-21 00:33:21] 2025-11-20 23:32:44,672 | INFO     | transexitcode: 0
[2025-11-21 00:33:21] 2025-11-20 23:32:44,672 | INFO     | exeerrorcode: 0
[2025-11-21 00:33:21] 2025-11-20 23:32:44,672 | INFO     | exeerrordiag: 
[2025-11-21 00:33:21] 2025-11-20 23:32:44,672 | INFO     | exitcode: 0
[2025-11-21 00:33:21] 2025-11-20 23:32:44,673 | INFO     | exitmsg: OK
[2025-11-21 00:33:21] 2025-11-20 23:32:44,673 | INFO     | cpuconsumptiontime: 338568 s
[2025-11-21 00:33:21] 2025-11-20 23:32:44,673 | INFO     | nevents: 1000
[2025-11-21 00:33:21] 2025-11-20 23:32:44,673 | INFO     | neventsw: 0
[2025-11-21 00:33:21] 2025-11-20 23:32:44,673 | INFO     | pid: 28967
[2025-11-21 00:33:21] 2025-11-20 23:32:44,673 | INFO     | pgrp: 28967
[2025-11-21 00:33:21] 2025-11-20 23:32:44,673 | INFO     | corecount: 8
[2025-11-21 00:33:21] 2025-11-20 23:32:44,673 | INFO     | event service: False
[2025-11-21 00:33:21] 2025-11-20 23:32:44,673 | INFO     | sizes: {0: 2296372, 1: 2297058, 2: 2297257, 12: 2297257, 23: 2297285, 34: 2297313, 45: 2297469, 56: 2297497, 67: 2297525, 77: 2297553, 88: 2297609, 97: 2298179, 99
[2025-11-21 00:33:21] 2025-11-20 23:32:44,673 | INFO     | --------------------------------------------------
[2025-11-21 00:33:21] 2025-11-20 23:32:44,674 | INFO     | 
[2025-11-21 00:33:21] 2025-11-20 23:32:44,674 | INFO     | executing command: ls -lF /var/lib/boinc/slots/26
[2025-11-21 00:33:21] 2025-11-20 23:32:45,085 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 00:33:21] 2025-11-20 23:32:45,085 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 00:33:21] 2025-11-20 23:32:45,085 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 00:33:21] 2025-11-20 23:32:45,085 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 00:33:21] 2025-11-20 23:32:45,085 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 00:33:21] 2025-11-20 23:32:45,086 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 00:33:21] 2025-11-20 23:32:45,086 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 00:33:21] 2025-11-20 23:32:45,086 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 00:33:21] 2025-11-20 23:32:45,086 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 00:33:21] 2025-11-20 23:32:45,086 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 00:33:21] 2025-11-20 23:32:45,086 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 00:33:21] 2025-11-20 23:32:45,086 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 00:33:21] 2025-11-20 23:32:45,086 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 00:33:21] 2025-11-20 23:32:45,086 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 00:33:21] 2025-11-20 23:32:45,087 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 00:33:21] 2025-11-20 23:32:45,087 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 00:33:21] 2025-11-20 23:32:45,087 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 00:33:21] 2025-11-20 23:32:45,087 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 00:33:21] 2025-11-20 23:32:45,087 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 00:33:21] 2025-11-20 23:32:45,087 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 00:33:21] 2025-11-20 23:32:45,087 | INFO     | job 6891572043 has completed (purged errors)
[2025-11-21 00:33:21] 2025-11-20 23:32:45,088 | INFO     | overall cleanup function is called
[2025-11-21 00:33:21] 2025-11-20 23:32:46,108 | INFO     | --- collectZombieJob: --- 10, [28967]
[2025-11-21 00:33:21] 2025-11-20 23:32:46,108 | INFO     | zombie collector waiting for pid 28967
[2025-11-21 00:33:21] 2025-11-20 23:32:46,108 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 00:33:21] 2025-11-20 23:32:46,109 | INFO     | collected zombie processes
[2025-11-21 00:33:21] 2025-11-20 23:32:46,109 | INFO     | will attempt to kill all subprocesses of pid=28967
[2025-11-21 00:33:21] 2025-11-20 23:32:46,218 | INFO     | process IDs to be killed: [28967] (in reverse order)
[2025-11-21 00:33:21] 2025-11-20 23:32:47,022 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 00:33:21] 2025-11-20 23:32:47,022 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 00:33:21] 2025-11-20 23:32:47,026 | INFO     | did not find any defunct processes belonging to 28967
[2025-11-21 00:33:21] 2025-11-20 23:32:47,029 | INFO     | did not find any defunct processes belonging to 28967
[2025-11-21 00:33:21] 2025-11-20 23:32:47,090 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 00:33:21] 2025-11-20 23:32:47,091 | INFO     | ready for new job
[2025-11-21 00:33:21] 2025-11-20 23:32:47,091 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 00:33:21] 2025-11-20 23:32:47,097 | INFO     | ***************************************
[2025-11-21 00:33:21] 2025-11-20 23:32:47,097 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 00:33:21] 2025-11-20 23:32:47,097 | INFO     | ***************************************
[2025-11-21 00:33:21] 2025-11-20 23:32:47,098 | INFO     | 
[2025-11-21 00:33:21] 2025-11-20 23:32:47,098 | INFO     | pilot is running in a VM
[2025-11-21 00:33:21] 2025-11-20 23:32:47,098 | INFO     | architecture information:
[2025-11-21 00:33:21] 2025-11-20 23:32:47,107 | INFO     | executing command: cat /etc/os-release
[2025-11-21 00:33:21] 2025-11-20 23:32:47,225 | INFO     | cat /etc/os-release:
[2025-11-21 00:33:21] NAME="CentOS Linux"
[2025-11-21 00:33:21] VERSION="7 (Core)"
[2025-11-21 00:33:21] ID="centos"
[2025-11-21 00:33:21] ID_LIKE="rhel fedora"
[2025-11-21 00:33:21] VERSION_ID="7"
[2025-11-21 00:33:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 00:33:21] ANSI_COLOR="0;31"
[2025-11-21 00:33:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 00:33:21] HOME_URL="https://www.centos.org/"
[2025-11-21 00:33:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 00:33:21] 
[2025-11-21 00:33:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 00:33:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 00:33:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 00:33:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 00:33:21] 
[2025-11-21 00:33:21] 2025-11-20 23:32:47,225 | INFO     | ***************************************
[2025-11-21 00:33:21] 2025-11-20 23:32:47,728 | INFO     | executing command: df -mP /var/lib/boinc/slots/26
[2025-11-21 00:33:21] 2025-11-20 23:32:47,915 | INFO     | sufficient remaining disk space (494221131776 B)
[2025-11-21 00:33:21] 2025-11-20 23:32:47,916 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 00:33:21] 2025-11-20 23:32:47,916 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 00:33:21] 2025-11-20 23:32:47,916 | INFO     | update_server=False
[2025-11-21 00:33:21] 2025-11-20 23:32:47,916 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 00:33:21] 2025-11-20 23:32:47,917 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 00:33:21] 2025-11-20 23:32:47,917 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 00:33:21] 2025-11-20 23:32:47,918 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 00:33:21] 2025-11-20 23:32:47,918 | INFO     | aborting loop
[2025-11-21 00:33:21] 2025-11-20 23:32:48,699 | INFO     | all data control threads have been joined
[2025-11-21 00:33:21] 2025-11-20 23:32:48,922 | INFO     | [job] retrieve thread has finished
[2025-11-21 00:33:21] 2025-11-20 23:32:48,924 | INFO     | [job] job monitor thread has finished
[2025-11-21 00:33:21] 2025-11-20 23:32:48,931 | INFO     | all job control threads have been joined
[2025-11-21 00:33:21] 2025-11-20 23:32:49,045 | INFO     | [data] copytool_in thread has finished
[2025-11-21 00:33:21] 2025-11-20 23:32:49,047 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 00:33:21] 2025-11-20 23:32:49,059 | INFO     | all payload control threads have been joined
[2025-11-21 00:33:21] 2025-11-20 23:32:49,123 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 00:33:21] 2025-11-20 23:32:49,361 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 00:33:21] 2025-11-20 23:32:49,398 | INFO     | [job] validate thread has finished
[2025-11-21 00:33:21] 2025-11-20 23:32:49,478 | INFO     | [payload] failed_post thread has finished
[2025-11-21 00:33:21] 2025-11-20 23:32:49,686 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 00:33:21] 2025-11-20 23:32:49,706 | INFO     | [data] control thread has finished
[2025-11-21 00:33:21] 2025-11-20 23:32:49,924 | INFO     | [data] copytool_out thread has finished
[2025-11-21 00:33:21] 2025-11-20 23:32:49,937 | INFO     | [job] control thread has finished
[2025-11-21 00:33:21] 2025-11-20 23:32:50,053 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 00:33:21] 2025-11-20 23:32:50,065 | INFO     | [payload] control thread has finished
[2025-11-21 00:33:21] 2025-11-20 23:32:50,262 | INFO     | [payload] validate_post thread has finished
[2025-11-21 00:33:21] 2025-11-20 23:32:50,691 | INFO     | [job] queue monitor thread has finished
[2025-11-21 00:33:21] 2025-11-20 23:32:51,926 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 00:33:21] 2025-11-20 23:32:55,170 | INFO     | [monitor] cgroup control has ended
[2025-11-21 00:33:21] 2025-11-20 23:32:57,262 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139858814396224)>', '<ExcThread(monitor, started 139858513204992)>']
[2025-11-21 00:33:21] 2025-11-20 23:33:02,288 | INFO     | all workflow threads have been joined
[2025-11-21 00:33:21] 2025-11-20 23:33:02,288 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 00:33:21] 2025-11-20 23:33:02,288 | INFO     | traces error code: 0
[2025-11-21 00:33:21] 2025-11-20 23:33:02,289 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 00:33:21] 2025-11-20 23:33:17,063 | INFO     | PID=22380 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 00:33:21] 2025-11-20 23:33:17,063 | INFO     | .. there are 9 such processes running
[2025-11-21 00:33:21] 2025-11-20 23:33:17,064 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 00:33:21] 2025-11-20 23:33:17,064 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 00:33:21] 2025-11-20 23:33:17,064 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 00:33:21] 2025-11-20 23:33:17,064 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 00:33:21] 2025-11-20 23:33:17,065 | INFO     | [monitor] control thread has ended
[2025-11-21 00:33:21] 2025-11-20 23:33:17,444 [wrapper] ==== pilot stdout END ====
[2025-11-21 00:33:21] 2025-11-20 23:33:17,495 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 00:33:21] 2025-11-20 23:33:17,622 [wrapper] pilotpid: 22380
[2025-11-21 00:33:21] 2025-11-20 23:33:17,688 [wrapper] Pilot exit status: 0
[2025-11-21 00:33:21] 2025-11-20 23:33:18,098 [wrapper] pandaids: 6891572043
[2025-11-21 00:33:21] 2025-11-20 23:33:19,115 [wrapper] cleanup supervisor_pilot 17938 22381
[2025-11-21 00:33:21] 2025-11-20 23:33:19,199 [wrapper] Test setup, not cleaning
[2025-11-21 00:33:21] 2025-11-20 23:33:19,301 [wrapper] apfmon messages muted
[2025-11-21 00:33:21] 2025-11-20 23:33:19,350 [wrapper] ==== wrapper stdout END ====
[2025-11-21 00:33:21] 2025-11-20 23:33:19,454 [wrapper] ==== wrapper stderr END ====
[2025-11-21 00:33:21]  *** Error codes and diagnostics ***
[2025-11-21 00:33:21]     "exeErrorCode": 0,
[2025-11-21 00:33:21]     "exeErrorDiag": "",
[2025-11-21 00:33:21]     "pilotErrorCode": 0,
[2025-11-21 00:33:21]     "pilotErrorDiag": "",
[2025-11-21 00:33:21]  *** Listing of results directory ***
[2025-11-21 00:33:21] total 1327888
[2025-11-21 00:33:21] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:47 pilot3.tar.gz
[2025-11-21 00:33:21] -rw-r--r--. 1 boinc boinc      5112 Nov 18 17:16 queuedata.json
[2025-11-21 00:33:21] -rwx------. 1 boinc boinc     36292 Nov 18 17:16 runpilot2-wrapper.sh
[2025-11-21 00:33:21] -rw-r--r--. 1 boinc boinc       100 Nov 19 22:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 00:33:21] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 22:52 run_atlas
[2025-11-21 00:33:21] -rw-r--r--. 1 boinc boinc       105 Nov 19 22:52 job.xml
[2025-11-21 00:33:21] -rw-r--r--. 2 boinc boinc 408015125 Nov 19 22:52 EVNT.47493065._000323.pool.root.1
[2025-11-21 00:33:21] -rw-r--r--. 1 boinc boinc      6391 Nov 19 22:52 init_data.xml
[2025-11-21 00:33:21] -rw-r--r--. 2 boinc boinc     15120 Nov 19 22:52 start_atlas.sh
[2025-11-21 00:33:21] drwxrwx--x. 2 boinc boinc        68 Nov 19 22:52 shared
[2025-11-21 00:33:21] -rw-r--r--. 2 boinc boinc    590093 Nov 19 22:52 input.tar.gz
[2025-11-21 00:33:21] -rw-r--r--. 1 boinc boinc         0 Nov 19 22:52 boinc_lockfile
[2025-11-21 00:33:21] -rw-r--r--. 1 boinc boinc      2773 Nov 19 22:52 pandaJob.out
[2025-11-21 00:33:21] -rw-------. 1 boinc boinc    989443 Nov 19 22:56 agis_schedconf.cvmfs.json
[2025-11-21 00:33:21] drwx------. 5 boinc boinc      4096 Nov 19 22:56 pilot3
[2025-11-21 00:33:21] -rw-r--r--. 1 boinc boinc       533 Nov 21 00:13 boinc_task_state.xml
[2025-11-21 00:33:21] -rw-------. 1 boinc boinc 918095876 Nov 21 00:30 HITS.47493068._003228.pool.root.1
[2025-11-21 00:33:21] -rw-------. 1 boinc boinc      1034 Nov 21 00:30 memory_monitor_summary.json
[2025-11-21 00:33:21] -rw-------. 1 boinc boinc   1526164 Nov 21 00:31 agis_ddmendpoints.agis.ALL.json
[2025-11-21 00:33:21] -rw-------. 1 boinc boinc   2577309 Nov 21 00:31 log.47493068._003228.job.log.tgz.1
[2025-11-21 00:33:21] -rw-------. 1 boinc boinc      8639 Nov 21 00:32 heartbeat.json
[2025-11-21 00:33:21] -rw-r--r--. 1 boinc boinc        29 Nov 21 00:33 wrapper_checkpoint.txt
[2025-11-21 00:33:21] -rw-r--r--. 1 boinc boinc      8192 Nov 21 00:33 boinc_mmap_file
[2025-11-21 00:33:21] -rw-------. 1 boinc boinc       820 Nov 21 00:33 pilotlog.txt
[2025-11-21 00:33:21] -rw-------. 1 boinc boinc        95 Nov 21 00:33 pilot_heartbeat.json
[2025-11-21 00:33:21] -rw-------. 1 boinc boinc  12292389 Nov 21 00:33 log.47493068._003228.job.log.1
[2025-11-21 00:33:21] -rw-------. 1 boinc boinc       353 Nov 21 00:33 output.list
[2025-11-21 00:33:21] -rw-r--r--. 1 boinc boinc       620 Nov 21 00:33 runtime_log
[2025-11-21 00:33:21] -rw-------. 1 boinc boinc  14888960 Nov 21 00:33 result.tar.gz
[2025-11-21 00:33:21] -rw-r--r--. 1 boinc boinc      8717 Nov 21 00:33 runtime_log.err
[2025-11-21 00:33:21] -rw-------. 1 boinc boinc       662 Nov 21 00:33 hSoMDmhYdf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmkSFKDm7xEzKm.diag
[2025-11-21 00:33:21] -rw-r--r--. 1 boinc boinc     21291 Nov 21 00:33 stderr.txt
[2025-11-21 00:33:21] HITS file was successfully produced:
[2025-11-21 00:33:21] -rw-------. 1 boinc boinc 918095876 Nov 21 00:30 shared/HITS.pool.root.1
[2025-11-21 00:33:21]  *** Contents of shared directory: ***
[2025-11-21 00:33:21] total 1310172
[2025-11-21 00:33:21] -rw-r--r--. 2 boinc boinc 408015125 Nov 19 22:52 ATLAS.root_0
[2025-11-21 00:33:21] -rw-r--r--. 2 boinc boinc     15120 Nov 19 22:52 start_atlas.sh
[2025-11-21 00:33:21] -rw-r--r--. 2 boinc boinc    590093 Nov 19 22:52 input.tar.gz
[2025-11-21 00:33:21] -rw-------. 1 boinc boinc 918095876 Nov 21 00:30 HITS.pool.root.1
[2025-11-21 00:33:21] -rw-------. 1 boinc boinc  14888960 Nov 21 00:33 result.tar.gz
00:33:23 (18597): run_atlas exited; CPU time 339171.332566
00:33:23 (18597): called boinc_finish(0)

</stderr_txt>
]]>

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