Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:11:54 (27450): wrapper (7.7.26015): starting
23:11:54 (27450): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 23:11:54] Arguments: --nthreads 8
[2025-11-20 23:11:54] Threads: 8
[2025-11-20 23:11:54] Checking for CVMFS
[2025-11-20 23:11:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 23:11:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 23:11:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 23:11:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 23:11:56] 2.11.2.0 20636 277333 144684 153088 0 294 23148427 25165824 4596 130560 2 121701272 99.887 69738284 2935 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-20 23:11:56] CVMFS is ok
[2025-11-20 23:11:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 23:11:56] Checking for apptainer binary...
[2025-11-20 23:11:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 23:11:56] Running /usr/bin/apptainer --version
[2025-11-20 23:11:57] apptainer version 1.3.2-1.el7
[2025-11-20 23:11:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 23:12:18] cg-vwn312.simple-grid.lan
[2025-11-20 23:12:18] apptainer works
[2025-11-20 23:12:18] Set ATHENA_PROC_NUMBER=8
[2025-11-20 23:12:18] Set ATHENA_CORE_NUMBER=8
[2025-11-20 23:12:18] Starting ATLAS job with PandaID=6891591846
[2025-11-20 23:12:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 23:36:21]  *** The last 200 lines of the pilot log: ***
[2025-11-21 23:36:21] 2025-11-21 22:35:14,162 | INFO     | sum of deviations: 4264915017343.327
[2025-11-21 23:36:21] 2025-11-21 22:35:14,163 | INFO     | mean x: 1763720936.6774194
[2025-11-21 23:36:21] 2025-11-21 22:35:14,163 | INFO     | mean y: 2863389.3050490883
[2025-11-21 23:36:21] 2025-11-21 22:35:14,163 | INFO     | intersect: -8362832479.708358
[2025-11-21 23:36:21] 2025-11-21 22:35:14,165 | INFO     | chi2: 14.996134702637024
[2025-11-21 23:36:21] 2025-11-21 22:35:14,167 | INFO     | sum of square deviations: 889737920783.1572
[2025-11-21 23:36:21] 2025-11-21 22:35:14,244 | INFO     | sum of deviations: 4762379685767.313
[2025-11-21 23:36:21] 2025-11-21 22:35:14,244 | INFO     | mean x: 1763720784.1815622
[2025-11-21 23:36:21] 2025-11-21 22:35:14,244 | INFO     | mean y: 2871438.6073187897
[2025-11-21 23:36:21] 2025-11-21 22:35:14,245 | INFO     | intersect: -9437557970.716413
[2025-11-21 23:36:21] 2025-11-21 22:35:14,246 | INFO     | chi2: 11.647779549107792
[2025-11-21 23:36:21] 2025-11-21 22:35:14,246 | INFO     | current chi2=11.647779549107792 (change=22.328121345431992 %)
[2025-11-21 23:36:21] 2025-11-21 22:35:14,247 | INFO     | right removable region: 1420
[2025-11-21 23:36:21] 2025-11-21 22:35:14,249 | INFO     | sum of square deviations: 889736896593.1575
[2025-11-21 23:36:21] 2025-11-21 22:35:14,301 | INFO     | sum of deviations: 3657010798066.1304
[2025-11-21 23:36:21] 2025-11-21 22:35:14,301 | INFO     | mean x: 1763721089.1815622
[2025-11-21 23:36:21] 2025-11-21 22:35:14,301 | INFO     | mean y: 2873224.600281492
[2025-11-21 23:36:21] 2025-11-21 22:35:14,302 | INFO     | intersect: -7246401356.021322
[2025-11-21 23:36:21] 2025-11-21 22:35:14,303 | INFO     | chi2: 10.123168721975096
[2025-11-21 23:36:21] 2025-11-21 22:35:14,303 | INFO     | current chi2=10.123168721975096 (change=32.49481334550183 %)
[2025-11-21 23:36:21] 2025-11-21 22:35:14,305 | INFO     | sum of square deviations: 880377399711.1516
[2025-11-21 23:36:21] 2025-11-21 22:35:14,317 | INFO     | time since job start (87575s) is within the limit (172800.0s)
[2025-11-21 23:36:21] 2025-11-21 22:35:14,367 | INFO     | sum of deviations: 3131548719324.68
[2025-11-21 23:36:21] 2025-11-21 22:35:14,367 | INFO     | mean x: 1763721241.6857345
[2025-11-21 23:36:21] 2025-11-21 22:35:14,367 | INFO     | mean y: 2881786.3947740113
[2025-11-21 23:36:21] 2025-11-21 22:35:14,367 | INFO     | intersect: -6270767443.422836
[2025-11-21 23:36:21] 2025-11-21 22:35:14,369 | INFO     | chi2: 6.614985230317288
[2025-11-21 23:36:21] 2025-11-21 22:35:14,369 | INFO     | current chi2=6.614985230317288 (change=34.65499378709692 %)
[2025-11-21 23:36:21] 2025-11-21 22:35:14,371 | INFO     | sum of square deviations: 871083936793.8533
[2025-11-21 23:36:21] 2025-11-21 22:35:14,446 | INFO     | sum of deviations: 2773710608760.026
[2025-11-21 23:36:21] 2025-11-21 22:35:14,447 | INFO     | mean x: 1763721394.1885188
[2025-11-21 23:36:21] 2025-11-21 22:35:14,447 | INFO     | mean y: 2887654.0262225373
[2025-11-21 23:36:21] 2025-11-21 22:35:14,447 | INFO     | intersect: -5613164410.90291
[2025-11-21 23:36:21] 2025-11-21 22:35:14,449 | INFO     | chi2: 4.833984958222928
[2025-11-21 23:36:21] 2025-11-21 22:35:14,449 | INFO     | current chi2=4.833984958222928 (change=26.92372257963355 %)
[2025-11-21 23:36:21] 2025-11-21 22:35:14,451 | INFO     | sum of square deviations: 861856447547.554
[2025-11-21 23:36:21] 2025-11-21 22:35:14,508 | INFO     | sum of deviations: 2674734623118.083
[2025-11-21 23:36:21] 2025-11-21 22:35:14,509 | INFO     | mean x: 1763721546.688478
[2025-11-21 23:36:21] 2025-11-21 22:35:14,509 | INFO     | mean y: 2889289.5298719774
[2025-11-21 23:36:21] 2025-11-21 22:35:14,509 | INFO     | intersect: -5470745095.744894
[2025-11-21 23:36:21] 2025-11-21 22:35:14,512 | INFO     | chi2: 4.771168282330838
[2025-11-21 23:36:21] 2025-11-21 22:35:14,512 | INFO     | current chi2=4.771168282330838 (change=1.2994801687422362 %)
[2025-11-21 23:36:21] 2025-11-21 22:35:14,512 | INFO     | left removable region: 40
[2025-11-21 23:36:21] 2025-11-21 22:35:14,514 | INFO     | sum of square deviations: 814923474561.2576
[2025-11-21 23:36:21] 2025-11-21 22:35:14,570 | INFO     | sum of deviations: 3056857260995.799
[2025-11-21 23:36:21] 2025-11-21 22:35:14,570 | INFO     | mean x: 1763721973.689855
[2025-11-21 23:36:21] 2025-11-21 22:35:14,571 | INFO     | mean y: 2903203.1
[2025-11-21 23:36:21] 2025-11-21 22:35:14,571 | INFO     | intersect: -6612989564.689451
[2025-11-21 23:36:21] 2025-11-21 22:35:14,572 | INFO     | chi2: 0.4911390151614313
[2025-11-21 23:36:21] 2025-11-21 22:35:14,573 | INFO     | current memory leak: 3.75 B/s (using 1380 data points, chi2=0.49)
[2025-11-21 23:36:21] 2025-11-21 22:35:14,575 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-21 23:36:21] 2025-11-21 22:35:14,575 | INFO     | ..............................
[2025-11-21 23:36:21] 2025-11-21 22:35:14,575 | INFO     | . Timing measurements:
[2025-11-21 23:36:21] 2025-11-21 22:35:14,575 | INFO     | . get job = 0 s
[2025-11-21 23:36:21] 2025-11-21 22:35:14,575 | INFO     | . initial setup = 4 s
[2025-11-21 23:36:21] 2025-11-21 22:35:14,576 | INFO     | . payload setup = 162 s
[2025-11-21 23:36:21] 2025-11-21 22:35:14,576 | INFO     | . stage-in = 0 s
[2025-11-21 23:36:21] 2025-11-21 22:35:14,576 | INFO     | . payload execution = 87125 s
[2025-11-21 23:36:21] 2025-11-21 22:35:14,576 | INFO     | . stage-out = 4 s
[2025-11-21 23:36:21] 2025-11-21 22:35:14,576 | INFO     | . log creation = 1 s
[2025-11-21 23:36:21] 2025-11-21 22:35:14,576 | INFO     | ..............................
[2025-11-21 23:36:21] 2025-11-21 22:35:14,705 | INFO     | 
[2025-11-21 23:36:21] 2025-11-21 22:35:14,705 | INFO     | job summary report
[2025-11-21 23:36:21] 2025-11-21 22:35:14,705 | INFO     | --------------------------------------------------
[2025-11-21 23:36:21] 2025-11-21 22:35:14,706 | INFO     | PanDA job id: 6891591846
[2025-11-21 23:36:21] 2025-11-21 22:35:14,706 | INFO     | task id: 47493068
[2025-11-21 23:36:21] 2025-11-21 22:35:14,706 | INFO     | errors: (none)
[2025-11-21 23:36:21] 2025-11-21 22:35:14,706 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 23:36:21] 2025-11-21 22:35:14,706 | INFO     | pilot state: finished 
[2025-11-21 23:36:21] 2025-11-21 22:35:14,706 | INFO     | transexitcode: 0
[2025-11-21 23:36:21] 2025-11-21 22:35:14,706 | INFO     | exeerrorcode: 0
[2025-11-21 23:36:21] 2025-11-21 22:35:14,706 | INFO     | exeerrordiag: 
[2025-11-21 23:36:21] 2025-11-21 22:35:14,706 | INFO     | exitcode: 0
[2025-11-21 23:36:21] 2025-11-21 22:35:14,706 | INFO     | exitmsg: OK
[2025-11-21 23:36:21] 2025-11-21 22:35:14,706 | INFO     | cpuconsumptiontime: 328980 s
[2025-11-21 23:36:21] 2025-11-21 22:35:14,706 | INFO     | nevents: 1000
[2025-11-21 23:36:21] 2025-11-21 22:35:14,707 | INFO     | neventsw: 0
[2025-11-21 23:36:21] 2025-11-21 22:35:14,707 | INFO     | pid: 5358
[2025-11-21 23:36:21] 2025-11-21 22:35:14,707 | INFO     | pgrp: 5358
[2025-11-21 23:36:21] 2025-11-21 22:35:14,707 | INFO     | corecount: 8
[2025-11-21 23:36:21] 2025-11-21 22:35:14,707 | INFO     | event service: False
[2025-11-21 23:36:21] 2025-11-21 22:35:14,707 | INFO     | sizes: {0: 2298574, 1: 2298773, 12: 2298773, 22: 2298801, 33: 2298829, 44: 2298885, 55: 2299041, 66: 2299069, 76: 2299097, 87: 2299153, 98: 2299181, 99: 2299751, 1
[2025-11-21 23:36:21] 2025-11-21 22:35:14,707 | INFO     | --------------------------------------------------
[2025-11-21 23:36:21] 2025-11-21 22:35:14,707 | INFO     | 
[2025-11-21 23:36:21] 2025-11-21 22:35:14,707 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-21 23:36:21] 2025-11-21 22:35:14,999 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 23:36:21] 2025-11-21 22:35:14,999 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 23:36:21] 2025-11-21 22:35:14,999 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 23:36:21] 2025-11-21 22:35:14,999 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 23:36:21] 2025-11-21 22:35:15,000 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 23:36:21] 2025-11-21 22:35:15,000 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 23:36:21] 2025-11-21 22:35:15,000 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 23:36:21] 2025-11-21 22:35:15,000 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 23:36:21] 2025-11-21 22:35:15,000 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 23:36:21] 2025-11-21 22:35:15,000 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 23:36:21] 2025-11-21 22:35:15,000 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 23:36:21] 2025-11-21 22:35:15,000 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 23:36:21] 2025-11-21 22:35:15,000 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 23:36:21] 2025-11-21 22:35:15,000 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 23:36:21] 2025-11-21 22:35:15,000 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 23:36:21] 2025-11-21 22:35:15,000 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 23:36:21] 2025-11-21 22:35:15,001 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 23:36:21] 2025-11-21 22:35:15,001 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 23:36:21] 2025-11-21 22:35:15,001 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 23:36:21] 2025-11-21 22:35:15,001 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 23:36:21] 2025-11-21 22:35:15,001 | INFO     | job 6891591846 has completed (purged errors)
[2025-11-21 23:36:21] 2025-11-21 22:35:15,001 | INFO     | overall cleanup function is called
[2025-11-21 23:36:21] 2025-11-21 22:35:16,023 | INFO     | --- collectZombieJob: --- 10, [5358]
[2025-11-21 23:36:21] 2025-11-21 22:35:16,023 | INFO     | zombie collector waiting for pid 5358
[2025-11-21 23:36:21] 2025-11-21 22:35:16,024 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 23:36:21] 2025-11-21 22:35:16,024 | INFO     | collected zombie processes
[2025-11-21 23:36:21] 2025-11-21 22:35:16,024 | INFO     | will attempt to kill all subprocesses of pid=5358
[2025-11-21 23:36:21] 2025-11-21 22:35:16,137 | INFO     | process IDs to be killed: [5358] (in reverse order)
[2025-11-21 23:36:21] 2025-11-21 22:35:16,917 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 23:36:21] 2025-11-21 22:35:16,918 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 23:36:21] 2025-11-21 22:35:16,921 | INFO     | did not find any defunct processes belonging to 5358
[2025-11-21 23:36:21] 2025-11-21 22:35:16,924 | INFO     | did not find any defunct processes belonging to 5358
[2025-11-21 23:36:21] 2025-11-21 22:35:16,959 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 23:36:21] 2025-11-21 22:35:16,960 | INFO     | ready for new job
[2025-11-21 23:36:21] 2025-11-21 22:35:16,960 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 23:36:21] 2025-11-21 22:35:16,967 | INFO     | ***************************************
[2025-11-21 23:36:21] 2025-11-21 22:35:16,967 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 23:36:21] 2025-11-21 22:35:16,967 | INFO     | ***************************************
[2025-11-21 23:36:21] 2025-11-21 22:35:16,967 | INFO     | 
[2025-11-21 23:36:21] 2025-11-21 22:35:16,968 | INFO     | pilot is running in a VM
[2025-11-21 23:36:21] 2025-11-21 22:35:16,968 | INFO     | architecture information:
[2025-11-21 23:36:21] 2025-11-21 22:35:16,978 | INFO     | executing command: cat /etc/os-release
[2025-11-21 23:36:21] 2025-11-21 22:35:17,135 | INFO     | cat /etc/os-release:
[2025-11-21 23:36:21] NAME="CentOS Linux"
[2025-11-21 23:36:21] VERSION="7 (Core)"
[2025-11-21 23:36:21] ID="centos"
[2025-11-21 23:36:21] ID_LIKE="rhel fedora"
[2025-11-21 23:36:21] VERSION_ID="7"
[2025-11-21 23:36:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 23:36:21] ANSI_COLOR="0;31"
[2025-11-21 23:36:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 23:36:21] HOME_URL="https://www.centos.org/"
[2025-11-21 23:36:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 23:36:21] 
[2025-11-21 23:36:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 23:36:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 23:36:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 23:36:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 23:36:21] 
[2025-11-21 23:36:21] 2025-11-21 22:35:17,135 | INFO     | ***************************************
[2025-11-21 23:36:21] 2025-11-21 22:35:17,639 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-21 23:36:21] 2025-11-21 22:35:17,771 | INFO     | sufficient remaining disk space (495165898752 B)
[2025-11-21 23:36:21] 2025-11-21 22:35:17,771 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 23:36:21] 2025-11-21 22:35:17,772 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 23:36:21] 2025-11-21 22:35:17,772 | INFO     | update_server=False
[2025-11-21 23:36:21] 2025-11-21 22:35:17,772 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 23:36:21] 2025-11-21 22:35:17,774 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 23:36:21] 2025-11-21 22:35:18,153 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-21 23:36:21] 2025-11-21 22:35:18,154 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-21 23:36:21] 2025-11-21 22:35:18,154 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 23:36:21] 2025-11-21 22:35:18,154 | INFO     | will abort loop
[2025-11-21 23:36:21] 2025-11-21 22:35:18,283 | INFO     | all payload control threads have been joined
[2025-11-21 23:36:21] 2025-11-21 22:35:18,480 | INFO     | all data control threads have been joined
[2025-11-21 23:36:21] 2025-11-21 22:35:18,778 | INFO     | [job] retrieve thread has finished
[2025-11-21 23:36:21] 2025-11-21 22:35:18,924 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 23:36:21] 2025-11-21 22:35:19,027 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 23:36:21] 2025-11-21 22:35:19,139 | INFO     | all job control threads have been joined
[2025-11-21 23:36:21] 2025-11-21 22:35:19,160 | INFO     | [job] job monitor thread has finished
[2025-11-21 23:36:21] 2025-11-21 22:35:19,162 | INFO     | [data] copytool_in thread has finished
[2025-11-21 23:36:21] 2025-11-21 22:35:19,289 | INFO     | [payload] control thread has finished
[2025-11-21 23:36:21] 2025-11-21 22:35:19,426 | INFO     | [payload] failed_post thread has finished
[2025-11-21 23:36:21] 2025-11-21 22:35:19,486 | INFO     | [data] control thread has finished
[2025-11-21 23:36:21] 2025-11-21 22:35:19,497 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 23:36:21] 2025-11-21 22:35:19,635 | INFO     | [job] validate thread has finished
[2025-11-21 23:36:21] 2025-11-21 22:35:19,741 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 23:36:21] 2025-11-21 22:35:19,756 | INFO     | [payload] validate_post thread has finished
[2025-11-21 23:36:21] 2025-11-21 22:35:19,783 | INFO     | [data] copytool_out thread has finished
[2025-11-21 23:36:21] 2025-11-21 22:35:19,959 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 23:36:21] 2025-11-21 22:35:19,987 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 23:36:21] 2025-11-21 22:35:20,144 | INFO     | [job] control thread has finished
[2025-11-21 23:36:21] 2025-11-21 22:35:20,747 | INFO     | [job] queue monitor thread has finished
[2025-11-21 23:36:21] 2025-11-21 22:35:22,931 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 23:36:21] 2025-11-21 22:35:47,478 | INFO     | PID=31218 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 23:36:21] 2025-11-21 22:35:47,478 | INFO     | .. there are 9 such processes running
[2025-11-21 23:36:21] 2025-11-21 22:35:47,480 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 23:36:21] 2025-11-21 22:35:47,480 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 23:36:21] 2025-11-21 22:35:47,480 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 23:36:21] 2025-11-21 22:36:11,780 | INFO     | [monitor] cgroup control has ended
[2025-11-21 23:36:21] 2025-11-21 22:36:13,427 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140703211648832)>', '<ExcThread(monitor, started 140702759499520)>']
[2025-11-21 23:36:21] 2025-11-21 22:36:13,637 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 23:36:21] 2025-11-21 22:36:13,637 | INFO     | [monitor] control thread has ended
[2025-11-21 23:36:21] 2025-11-21 22:36:18,453 | INFO     | all workflow threads have been joined
[2025-11-21 23:36:21] 2025-11-21 22:36:18,453 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 23:36:21] 2025-11-21 22:36:18,454 | INFO     | traces error code: 0
[2025-11-21 23:36:21] 2025-11-21 22:36:18,454 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 23:36:21] 2025-11-21 22:36:18,744 [wrapper] ==== pilot stdout END ====
[2025-11-21 23:36:21] 2025-11-21 22:36:18,752 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 23:36:21] 2025-11-21 22:36:18,768 [wrapper] pilotpid: 31218
[2025-11-21 23:36:21] 2025-11-21 22:36:18,787 [wrapper] Pilot exit status: 0
[2025-11-21 23:36:21] 2025-11-21 22:36:19,162 [wrapper] pandaids: 6891591846
[2025-11-21 23:36:21] 2025-11-21 22:36:19,415 [wrapper] cleanup supervisor_pilot 25226 31219
[2025-11-21 23:36:21] 2025-11-21 22:36:19,432 [wrapper] Test setup, not cleaning
[2025-11-21 23:36:21] 2025-11-21 22:36:19,436 [wrapper] apfmon messages muted
[2025-11-21 23:36:21] 2025-11-21 22:36:19,441 [wrapper] ==== wrapper stdout END ====
[2025-11-21 23:36:21] 2025-11-21 22:36:19,445 [wrapper] ==== wrapper stderr END ====
[2025-11-21 23:36:21]  *** Error codes and diagnostics ***
[2025-11-21 23:36:21]     "exeErrorCode": 0,
[2025-11-21 23:36:21]     "exeErrorDiag": "",
[2025-11-21 23:36:21]     "pilotErrorCode": 0,
[2025-11-21 23:36:21]     "pilotErrorDiag": "",
[2025-11-21 23:36:21]  *** Listing of results directory ***
[2025-11-21 23:36:21] total 1307016
[2025-11-21 23:36:21] -rw-r--r--. 1 boinc boinc    576529 Nov 18 18:59 pilot3.tar.gz
[2025-11-21 23:36:21] -rw-r--r--. 1 boinc boinc      5112 Nov 18 19:11 queuedata.json
[2025-11-21 23:36:21] -rwx------. 1 boinc boinc     36292 Nov 18 19:11 runpilot2-wrapper.sh
[2025-11-21 23:36:21] -rw-r--r--. 1 boinc boinc       100 Nov 20 23:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 23:36:21] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 23:11 run_atlas
[2025-11-21 23:36:21] -rw-r--r--. 1 boinc boinc       105 Nov 20 23:11 job.xml
[2025-11-21 23:36:21] -rw-r--r--. 1 boinc boinc      6389 Nov 20 23:11 init_data.xml
[2025-11-21 23:36:21] -rw-r--r--. 2 boinc boinc 407585883 Nov 20 23:11 EVNT.47493065._000628.pool.root.1
[2025-11-21 23:36:21] drwxrwx--x. 2 boinc boinc        68 Nov 20 23:11 shared
[2025-11-21 23:36:21] -rw-r--r--. 2 boinc boinc    590091 Nov 20 23:11 input.tar.gz
[2025-11-21 23:36:21] -rw-r--r--. 2 boinc boinc     15120 Nov 20 23:11 start_atlas.sh
[2025-11-21 23:36:21] -rw-r--r--. 1 boinc boinc         0 Nov 20 23:11 boinc_lockfile
[2025-11-21 23:36:21] -rw-r--r--. 1 boinc boinc      2772 Nov 20 23:12 pandaJob.out
[2025-11-21 23:36:21] -rw-------. 1 boinc boinc    989440 Nov 20 23:15 agis_schedconf.cvmfs.json
[2025-11-21 23:36:21] drwx------. 5 boinc boinc      4096 Nov 20 23:15 pilot3
[2025-11-21 23:36:21] -rw-r--r--. 1 boinc boinc       533 Nov 21 23:21 boinc_task_state.xml
[2025-11-21 23:36:21] -rw-------. 1 boinc boinc 898555208 Nov 21 23:33 HITS.47493068._005778.pool.root.1
[2025-11-21 23:36:21] -rw-------. 1 boinc boinc      1032 Nov 21 23:33 memory_monitor_summary.json
[2025-11-21 23:36:21] -rw-------. 1 boinc boinc   1526164 Nov 21 23:34 agis_ddmendpoints.agis.ALL.json
[2025-11-21 23:36:21] -rw-------. 1 boinc boinc   2517915 Nov 21 23:34 log.47493068._005778.job.log.tgz.1
[2025-11-21 23:36:21] -rw-------. 1 boinc boinc      8630 Nov 21 23:35 heartbeat.json
[2025-11-21 23:36:21] -rw-------. 1 boinc boinc        95 Nov 21 23:35 pilot_heartbeat.json
[2025-11-21 23:36:21] -rw-r--r--. 1 boinc boinc      8192 Nov 21 23:36 boinc_mmap_file
[2025-11-21 23:36:21] -rw-r--r--. 1 boinc boinc        29 Nov 21 23:36 wrapper_checkpoint.txt
[2025-11-21 23:36:21] -rw-------. 1 boinc boinc      5070 Nov 21 23:36 pilotlog.txt
[2025-11-21 23:36:21] -rw-------. 1 boinc boinc  11649251 Nov 21 23:36 log.47493068._005778.job.log.1
[2025-11-21 23:36:21] -rw-------. 1 boinc boinc       353 Nov 21 23:36 output.list
[2025-11-21 23:36:21] -rw-r--r--. 1 boinc boinc       620 Nov 21 23:36 runtime_log
[2025-11-21 23:36:21] -rw-------. 1 boinc boinc  14182400 Nov 21 23:36 result.tar.gz
[2025-11-21 23:36:21] -rw-r--r--. 1 boinc boinc      8703 Nov 21 23:36 runtime_log.err
[2025-11-21 23:36:21] -rw-------. 1 boinc boinc       662 Nov 21 23:36 kdJODmSMff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWCGKDmp0Norn.diag
[2025-11-21 23:36:21] -rw-r--r--. 1 boinc boinc     20870 Nov 21 23:36 stderr.txt
[2025-11-21 23:36:21] HITS file was successfully produced:
[2025-11-21 23:36:21] -rw-------. 1 boinc boinc 898555208 Nov 21 23:33 shared/HITS.pool.root.1
[2025-11-21 23:36:21]  *** Contents of shared directory: ***
[2025-11-21 23:36:21] total 1289980
[2025-11-21 23:36:21] -rw-r--r--. 2 boinc boinc 407585883 Nov 20 23:11 ATLAS.root_0
[2025-11-21 23:36:21] -rw-r--r--. 2 boinc boinc    590091 Nov 20 23:11 input.tar.gz
[2025-11-21 23:36:21] -rw-r--r--. 2 boinc boinc     15120 Nov 20 23:11 start_atlas.sh
[2025-11-21 23:36:21] -rw-------. 1 boinc boinc 898555208 Nov 21 23:33 HITS.pool.root.1
[2025-11-21 23:36:21] -rw-------. 1 boinc boinc  14182400 Nov 21 23:36 result.tar.gz
23:36:23 (27450): run_atlas exited; CPU time 329527.693142
23:36:23 (27450): called boinc_finish(0)

</stderr_txt>
]]>

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