Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:39:53 (3858459): wrapper (7.7.26015): starting
11:39:53 (3858459): wrapper: running run_atlas (--nthreads 12)
[2025-11-18 11:39:53] Arguments: --nthreads 12
[2025-11-18 11:39:53] Threads: 12
[2025-11-18 11:39:53] Checking for CVMFS
[2025-11-18 11:39:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-18 11:39:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-18 11:39:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-18 11:39:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-18 11:39:54] 2.11.5.0 394429 16978 228276 153012 0 245 35623382 45568001 15277 130560 0 154387476 99.762 107462628 21484 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-18 11:39:54] CVMFS is ok
[2025-11-18 11:39:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-18 11:39:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-18 11:39:54] Further information can be found at the LHC@home message board.
[2025-11-18 11:39:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-18 11:39:54] Checking for apptainer binary...
[2025-11-18 11:39:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-18 11:39:54] Running /usr/bin/apptainer --version
[2025-11-18 11:39:54] apptainer version 1.4.1-1.el9
[2025-11-18 11:39:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-18 11:39:54] wns0074.triumf.lcg
[2025-11-18 11:39:54] apptainer works
[2025-11-18 11:39:54] Set ATHENA_PROC_NUMBER=12
[2025-11-18 11:39:54] Set ATHENA_CORE_NUMBER=12
[2025-11-18 11:39:54] Starting ATLAS job with PandaID=6891590846
[2025-11-18 11:39:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-18 11:45:18]  *** The last 200 lines of the pilot log: ***
[2025-11-18 11:45:19] 2025-11-18 19:44:43,581 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-18 11:45:19] 2025-11-18 19:44:43,582 | WARNING  | wrong length of table data, x=[1763494855.0, 1763494916.0], y=[1171.0, 369307.0] (must be same and length>=4)
[2025-11-18 11:45:19] 2025-11-18 19:44:43,584 | INFO     | could have reported an average CPU frequency of 1563 MHz (4 samples)
[2025-11-18 11:45:19] 2025-11-18 19:44:43,584 | INFO     | ..............................
[2025-11-18 11:45:19] 2025-11-18 19:44:43,585 | INFO     | . Timing measurements:
[2025-11-18 11:45:19] 2025-11-18 19:44:43,585 | INFO     | . get job = 0 s
[2025-11-18 11:45:19] 2025-11-18 19:44:43,585 | INFO     | . initial setup = 3 s
[2025-11-18 11:45:19] 2025-11-18 19:44:43,585 | INFO     | . payload setup = 11 s
[2025-11-18 11:45:19] 2025-11-18 19:44:43,585 | INFO     | . stage-in = 0 s
[2025-11-18 11:45:19] 2025-11-18 19:44:43,585 | INFO     | . payload execution = 109 s
[2025-11-18 11:45:19] 2025-11-18 19:44:43,585 | INFO     | . stage-out = 0 s
[2025-11-18 11:45:19] 2025-11-18 19:44:43,585 | INFO     | . log creation = 0 s
[2025-11-18 11:45:19] 2025-11-18 19:44:43,585 | INFO     | ..............................
[2025-11-18 11:45:19] 2025-11-18 19:44:43,586 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 11:45:19] 2025-11-18 19:44:43,586 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891590846/pilotlog.txt
[2025-11-18 11:45:19] 2025-11-18 19:44:43,616 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-18 11:45:19] - Log from pilotlog.txt -
[2025-11-18 11:45:19] 2025-11-18 19:44:43,578 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891590846/memory_monitor_summary.json (trf name=prmon)
[2025-11-18 11:45:19] 2025-11-18 19:44:43,579 | INFO     | extracted standard info from prmon json
[2025-11-18 11:45:19] 2025-11-18 19:44:43,579 | INFO     | extracted standard memory fields from prmon json
[2025-11-18 11:45:19] 2025-11-18 19:44:43,579 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-18 11:45:19] 2025-11-18 19:44:43,580 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-18 11:45:19] 2025-11-18 19:44:43,581 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-18 11:45:19] 2025-11-18 19:44:43,582 | WARNING  | wrong length of table data, x=[1763494855.0, 1763494916.0], y=[1171.0, 369307.0] (must be same and length>=4)
[2025-11-18 11:45:19] 2025-11-18 19:44:43,584 | INFO     | could have reported an average CPU frequency of 1563 MHz (4 samples)
[2025-11-18 11:45:19] 2025-11-18 19:44:43,584 | INFO     | ..............................
[2025-11-18 11:45:19] 2025-11-18 19:44:43,585 | INFO     | . Timing measurements:
[2025-11-18 11:45:19] 2025-11-18 19:44:43,585 | INFO     | . get job = 0 s
[2025-11-18 11:45:19] 2025-11-18 19:44:43,585 | INFO     | . initial setup = 3 s
[2025-11-18 11:45:19] 2025-11-18 19:44:43,585 | INFO     | . payload setup = 11 s
[2025-11-18 11:45:19] 2025-11-18 19:44:43,585 | INFO     | . stage-in = 0 s
[2025-11-18 11:45:19] 2025-11-18 19:44:43,585 | INFO     | . payload execution = 109 s
[2025-11-18 11:45:19] 2025-11-18 19:44:43,585 | INFO     | . stage-out = 0 s
[2025-11-18 11:45:19] 2025-11-18 19:44:43,585 | INFO     | . log creation = 0 s
[2025-11-18 11:45:19] 2025-11-18 19:44:43,585 | INFO     | ..............................
[2025-11-18 11:45:19] 2025-11-18 19:44:43,586 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 11:45:19] 2025-11-18 19:44:43,586 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891590846/pilotlog.txt
[2025-11-18 11:45:19] 2025-11-18 19:44:43,619 | WARNING  | 
[2025-11-18 11:45:19] [begin log extracts]
[2025-11-18 11:45:19] - Log from pilotlog.txt -
[2025-11-18 11:45:19] 2025-11-18 19:44:43,578 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6891590846/memory_monitor_summary.json (trf name=prmon)
[2025-11-18 11:45:19] 2025-11-18 19:44:43,579 | INFO     | extracted standard info from prmon json
[2025-11-18 11:45:19] 2025-11-18 19:44:43,579 | INFO     | extracted standard memory fields from prmon json
[2025-11-18 11:45:19] 2025-11-18 19:44:43,579 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-18 11:45:19] 2025-11-18 19:44:43,580 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-18 11:45:19] 2025-11-18 19:44:43,581 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-18 11:45:19] 2025-11-18 19:44:43,582 | WARNING  | wrong length of table data, x=[1763494855.0, 1763494916.0], y=[1171.0, 369307.0] (must be same and length>=4)
[2025-11-18 11:45:19] 2025-11-18 19:44:43,584 | INFO     | could have reported an average CPU frequency of 1563 MHz (4 samples)
[2025-11-18 11:45:19] 2025-11-18 19:44:43,584 | INFO     | ..............................
[2025-11-18 11:45:19] 2025-11-18 19:44:43,585 | INFO     | . Timing measurements:
[2025-11-18 11:45:19] 2025-11-18 19:44:43,585 | INFO     | . get job = 0 s
[2025-11-18 11:45:19] 2025-11-18 19:44:43,585 | INFO     | . initial setup = 3 s
[2025-11-18 11:45:19] 2025-11-18 19:44:43,585 | INFO     | . payload setup = 11 s
[2025-11-18 11:45:19] 2025-11-18 19:44:43,585 | INFO     | . stage-in = 0 s
[2025-11-18 11:45:19] 2025-11-18 19:44:43,585 | INFO     | . payload execution = 109 s
[2025-11-18 11:45:19] 2025-11-18 19:44:43,585 | INFO     | . stage-out = 0 s
[2025-11-18 11:45:19] 2025-11-18 19:44:43,585 | INFO     | . log creation = 0 s
[2025-11-18 11:45:19] 2025-11-18 19:44:43,585 | INFO     | ..............................
[2025-11-18 11:45:19] 2025-11-18 19:44:43,586 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-18 11:45:19] 2025-11-18 19:44:43,586 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6891590846/pilotlog.txt
[2025-11-18 11:45:19] [end log extracts]
[2025-11-18 11:45:19] 2025-11-18 19:44:43,619 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-18 11:45:19] 2025-11-18 19:44:43,621 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-18 11:45:19] 2025-11-18 19:44:43,788 | INFO     | 
[2025-11-18 11:45:19] 2025-11-18 19:44:43,788 | INFO     | job summary report
[2025-11-18 11:45:19] 2025-11-18 19:44:43,789 | INFO     | --------------------------------------------------
[2025-11-18 11:45:19] 2025-11-18 19:44:43,789 | INFO     | PanDA job id: 6891590846
[2025-11-18 11:45:19] 2025-11-18 19:44:43,789 | INFO     | task id: 47493068
[2025-11-18 11:45:19] 2025-11-18 19:44:43,789 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-18 11:42:29,956 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-18 11:45:19] 2025-11-18 19:44:43,789 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-18 11:45:19] 2025-11-18 19:44:43,789 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-18 11:45:19] 2025-11-18 19:44:43,790 | INFO     | pilot state: failed 
[2025-11-18 11:45:19] 2025-11-18 19:44:43,790 | INFO     | transexitcode: 65
[2025-11-18 11:45:19] 2025-11-18 19:44:43,790 | INFO     | exeerrorcode: 65
[2025-11-18 11:45:19] 2025-11-18 19:44:43,790 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-18 11:45:19] 2025-11-18 19:44:43,790 | INFO     | exitcode: 65
[2025-11-18 11:45:19] 2025-11-18 19:44:43,790 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-18 11:45:19] 2025-11-18 19:44:43,790 | INFO     | cpuconsumptiontime: 81 s
[2025-11-18 11:45:19] 2025-11-18 19:44:43,790 | INFO     | nevents: 0
[2025-11-18 11:45:19] 2025-11-18 19:44:43,790 | INFO     | neventsw: 0
[2025-11-18 11:45:19] 2025-11-18 19:44:43,791 | INFO     | pid: 3868946
[2025-11-18 11:45:19] 2025-11-18 19:44:43,791 | INFO     | pgrp: 3868946
[2025-11-18 11:45:19] 2025-11-18 19:44:43,791 | INFO     | corecount: 12
[2025-11-18 11:45:19] 2025-11-18 19:44:43,791 | INFO     | event service: False
[2025-11-18 11:45:19] 2025-11-18 19:44:43,791 | INFO     | sizes: {0: 2296969, 1: 2297168, 9: 2297430, 12: 2297458, 125: 2322841, 126: 2327287, 251: 2327453}
[2025-11-18 11:45:19] 2025-11-18 19:44:43,791 | INFO     | --------------------------------------------------
[2025-11-18 11:45:19] 2025-11-18 19:44:43,791 | INFO     | 
[2025-11-18 11:45:19] 2025-11-18 19:44:43,792 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-18 11:45:19] 2025-11-18 19:44:43,835 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-18 11:45:19] 2025-11-18 19:44:43,836 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-18 11:45:19] 2025-11-18 19:44:43,836 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-18 11:45:19] 2025-11-18 19:44:43,836 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-18 11:45:19] 2025-11-18 19:44:43,836 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-18 11:45:19] 2025-11-18 19:44:43,836 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-18 11:45:19] 2025-11-18 19:44:43,837 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-18 11:45:19] 2025-11-18 19:44:43,837 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-18 11:45:19] 2025-11-18 19:44:43,837 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-18 11:45:19] 2025-11-18 19:44:43,837 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-18 11:45:19] 2025-11-18 19:44:43,837 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-18 11:45:19] 2025-11-18 19:44:43,837 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-18 11:45:19] 2025-11-18 19:44:43,837 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-18 11:45:19] 2025-11-18 19:44:43,838 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-18 11:45:19] 2025-11-18 19:44:43,838 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-18 11:45:19] 2025-11-18 19:44:43,838 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-18 11:45:19] 2025-11-18 19:44:43,838 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-18 11:45:19] 2025-11-18 19:44:43,838 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-18 11:45:19] 2025-11-18 19:44:43,838 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-18 11:45:19] 2025-11-18 19:44:43,838 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-18 11:45:19] 2025-11-18 19:44:43,839 | INFO     | job 6891590846 has completed (purged errors)
[2025-11-18 11:45:19] 2025-11-18 19:44:43,839 | INFO     | overall cleanup function is called
[2025-11-18 11:45:19] 2025-11-18 19:44:44,850 | INFO     | --- collectZombieJob: --- 10, [3868946]
[2025-11-18 11:45:19] 2025-11-18 19:44:44,850 | INFO     | zombie collector waiting for pid 3868946
[2025-11-18 11:45:19] 2025-11-18 19:44:44,850 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-18 11:45:19] 2025-11-18 19:44:44,850 | INFO     | collected zombie processes
[2025-11-18 11:45:19] 2025-11-18 19:44:44,850 | INFO     | will attempt to kill all subprocesses of pid=3868946
[2025-11-18 11:45:19] 2025-11-18 19:44:45,252 | INFO     | process IDs to be killed: [3868946] (in reverse order)
[2025-11-18 11:45:19] 2025-11-18 19:44:45,382 | WARNING  | found no corresponding commands to process id(s)
[2025-11-18 11:45:19] 2025-11-18 19:44:45,382 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-18 11:45:19] 2025-11-18 19:44:45,398 | INFO     | did not find any defunct processes belonging to 3868946
[2025-11-18 11:45:19] 2025-11-18 19:44:45,412 | INFO     | did not find any defunct processes belonging to 3868946
[2025-11-18 11:45:19] 2025-11-18 19:44:45,414 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-18 11:45:19] 2025-11-18 19:44:45,414 | INFO     | ready for new job
[2025-11-18 11:45:19] 2025-11-18 19:44:45,414 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-18 11:45:19] 2025-11-18 19:44:45,417 | INFO     | ***************************************
[2025-11-18 11:45:19] 2025-11-18 19:44:45,418 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-18 11:45:19] 2025-11-18 19:44:45,418 | INFO     | ***************************************
[2025-11-18 11:45:19] 2025-11-18 19:44:45,418 | INFO     | 
[2025-11-18 11:45:19] 2025-11-18 19:44:45,422 | INFO     | architecture information:
[2025-11-18 11:45:19] 2025-11-18 19:44:45,423 | INFO     | executing command: cat /etc/os-release
[2025-11-18 11:45:19] 2025-11-18 19:44:45,441 | INFO     | cat /etc/os-release:
[2025-11-18 11:45:19] NAME="CentOS Linux"
[2025-11-18 11:45:19] VERSION="7 (Core)"
[2025-11-18 11:45:19] ID="centos"
[2025-11-18 11:45:19] ID_LIKE="rhel fedora"
[2025-11-18 11:45:19] VERSION_ID="7"
[2025-11-18 11:45:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-18 11:45:19] ANSI_COLOR="0;31"
[2025-11-18 11:45:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-18 11:45:19] HOME_URL="https://www.centos.org/"
[2025-11-18 11:45:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-18 11:45:19] 
[2025-11-18 11:45:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-18 11:45:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-18 11:45:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-18 11:45:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-18 11:45:19] 
[2025-11-18 11:45:19] 2025-11-18 19:44:45,441 | INFO     | ***************************************
[2025-11-18 11:45:19] 2025-11-18 19:44:45,944 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-18 11:45:19] 2025-11-18 19:44:45,964 | INFO     | sufficient remaining disk space (2120913780736 B)
[2025-11-18 11:45:19] 2025-11-18 19:44:45,964 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-18 11:45:19] 2025-11-18 19:44:45,965 | INFO     | current server update state: UPDATING_FINAL
[2025-11-18 11:45:19] 2025-11-18 19:44:45,965 | INFO     | update_server=False
[2025-11-18 11:45:19] 2025-11-18 19:44:45,965 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-18 11:45:19] 2025-11-18 19:44:45,966 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-18 11:45:19] 2025-11-18 19:44:45,966 | INFO     | aborting loop
[2025-11-18 11:45:19] 2025-11-18 19:44:46,014 | INFO     | all job control threads have been joined
[2025-11-18 11:45:19] 2025-11-18 19:44:46,415 | INFO     | all data control threads have been joined
[2025-11-18 11:45:19] 2025-11-18 19:44:46,470 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-18 11:45:19] 2025-11-18 19:44:46,947 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-18 11:45:19] 2025-11-18 19:44:46,970 | INFO     | [job] retrieve thread has finished
[2025-11-18 11:45:19] 2025-11-18 19:44:46,971 | INFO     | [job] job monitor thread has finished
[2025-11-18 11:45:19] 2025-11-18 19:44:47,006 | INFO     | all payload control threads have been joined
[2025-11-18 11:45:19] 2025-11-18 19:44:47,021 | INFO     | [job] control thread has finished
[2025-11-18 11:45:19] 2025-11-18 19:44:47,075 | INFO     | [job] validate thread has finished
[2025-11-18 11:45:19] 2025-11-18 19:44:47,420 | INFO     | [data] control thread has finished
[2025-11-18 11:45:19] 2025-11-18 19:44:47,433 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-18 11:45:19] 2025-11-18 19:44:47,434 | INFO     | [job] create_data_payload thread has finished
[2025-11-18 11:45:19] 2025-11-18 19:44:47,465 | INFO     | [payload] failed_post thread has finished
[2025-11-18 11:45:19] 2025-11-18 19:44:47,576 | INFO     | [payload] validate_pre thread has finished
[2025-11-18 11:45:19] 2025-11-18 19:44:47,958 | INFO     | [payload] execute_payloads thread has finished
[2025-11-18 11:45:19] 2025-11-18 19:44:48,011 | INFO     | [payload] control thread has finished
[2025-11-18 11:45:19] 2025-11-18 19:44:48,210 | INFO     | [data] copytool_in thread has finished
[2025-11-18 11:45:19] 2025-11-18 19:44:48,517 | INFO     | [payload] validate_post thread has finished
[2025-11-18 11:45:19] 2025-11-18 19:44:48,799 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-18 11:45:19] 2025-11-18 19:44:48,954 | INFO     | [data] copytool_out thread has finished
[2025-11-18 11:45:19] 2025-11-18 19:44:49,804 | INFO     | [job] queue monitor thread has finished
[2025-11-18 11:45:19] 2025-11-18 19:44:50,482 | INFO     | [data] queue_monitor thread has finished
[2025-11-18 11:45:19] 2025-11-18 19:45:11,936 | INFO     | [monitor] cgroup control has ended
[2025-11-18 11:45:19] 2025-11-18 19:45:13,546 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140260059285312)>', '<ExcThread(monitor, started 140259513845504)>']
[2025-11-18 11:45:19] 2025-11-18 19:45:16,150 | INFO     | PID=3862152 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-18 11:45:19] 2025-11-18 19:45:16,151 | INFO     | .. there are 26 such processes running
[2025-11-18 11:45:19] 2025-11-18 19:45:16,152 | INFO     | found 0 job(s) in 20 queues
[2025-11-18 11:45:19] 2025-11-18 19:45:16,155 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-18 11:45:19] 2025-11-18 19:45:16,155 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-18 11:45:19] 2025-11-18 19:45:16,155 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-18 11:45:19] 2025-11-18 19:45:16,155 | INFO     | [monitor] control thread has ended
[2025-11-18 11:45:19] 2025-11-18 19:45:18,571 | INFO     | all workflow threads have been joined
[2025-11-18 11:45:19] 2025-11-18 19:45:18,572 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-18 11:45:19] 2025-11-18 19:45:18,572 | INFO     | traces error code: 0
[2025-11-18 11:45:19] 2025-11-18 19:45:18,573 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-18 11:45:19] 2025-11-18 19:45:18,767 [wrapper] ==== pilot stdout END ====
[2025-11-18 11:45:19] 2025-11-18 19:45:18,771 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-18 11:45:19] 2025-11-18 19:45:18,774 [wrapper] pilotpid: 3862152
[2025-11-18 11:45:19] 2025-11-18 19:45:18,778 [wrapper] Pilot exit status: 0
[2025-11-18 11:45:19] 2025-11-18 19:45:18,793 [wrapper] pandaids: 6891590846
[2025-11-18 11:45:19] 2025-11-18 19:45:18,884 [wrapper] cleanup supervisor_pilot 3862158 3862153
[2025-11-18 11:45:19] 2025-11-18 19:45:18,888 [wrapper] Test setup, not cleaning
[2025-11-18 11:45:19] 2025-11-18 19:45:18,892 [wrapper] apfmon messages muted
[2025-11-18 11:45:19] 2025-11-18 19:45:18,897 [wrapper] ==== wrapper stdout END ====
[2025-11-18 11:45:19] 2025-11-18 19:45:18,902 [wrapper] ==== wrapper stderr END ====
[2025-11-18 11:45:19]  *** Error codes and diagnostics ***
[2025-11-18 11:45:19]     "exeErrorCode": 65,
[2025-11-18 11:45:19]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-18 11:45:19]     "pilotErrorCode": 1305,
[2025-11-18 11:45:19]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-18 11:45:19]  *** Listing of results directory ***
[2025-11-18 11:45:19] total 405036
[2025-11-18 11:45:19] -rw-r--r--. 1 boinc boinc    576529 Nov 18 09:59 pilot3.tar.gz
[2025-11-18 11:45:19] -rw-r--r--. 1 boinc boinc      5112 Nov 18 10:01 queuedata.json
[2025-11-18 11:45:19] -rwx------. 1 boinc boinc     36292 Nov 18 10:02 runpilot2-wrapper.sh
[2025-11-18 11:45:19] -rw-r--r--. 1 boinc boinc       100 Nov 18 11:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-18 11:45:19] -rwxr-xr-x. 1 boinc boinc      7986 Nov 18 11:39 run_atlas
[2025-11-18 11:45:19] -rw-r--r--. 1 boinc boinc       105 Nov 18 11:39 job.xml
[2025-11-18 11:45:19] -rw-r--r--. 2 boinc boinc 410530311 Nov 18 11:39 EVNT.47493065._000555.pool.root.1
[2025-11-18 11:45:19] -rw-r--r--. 1 boinc boinc      6594 Nov 18 11:39 init_data.xml
[2025-11-18 11:45:19] -rw-r--r--. 2 boinc boinc     15120 Nov 18 11:39 start_atlas.sh
[2025-11-18 11:45:19] drwxrwx--x. 2 boinc boinc      4096 Nov 18 11:39 shared
[2025-11-18 11:45:19] -rw-r--r--. 2 boinc boinc    590093 Nov 18 11:39 input.tar.gz
[2025-11-18 11:45:19] -rw-r--r--. 1 boinc boinc         0 Nov 18 11:39 boinc_lockfile
[2025-11-18 11:45:19] -rw-r--r--. 1 boinc boinc      2769 Nov 18 11:39 pandaJob.out
[2025-11-18 11:45:19] -rw-------. 1 boinc boinc    992790 Nov 18 11:40 agis_schedconf.cvmfs.json
[2025-11-18 11:45:19] -rw-------. 1 boinc boinc   1525063 Nov 18 11:40 agis_ddmendpoints.agis.ALL.json
[2025-11-18 11:45:19] drwx------. 5 boinc boinc      4096 Nov 18 11:40 pilot3
[2025-11-18 11:45:19] -rw-r--r--. 1 boinc boinc       524 Nov 18 11:41 boinc_task_state.xml
[2025-11-18 11:45:19] -rw-------. 1 boinc boinc       987 Nov 18 11:42 memory_monitor_summary.json
[2025-11-18 11:45:19] -rw-------. 1 boinc boinc     49424 Nov 18 11:42 log.47493068._005541.job.log.tgz.1
[2025-11-18 11:45:19] -rw-------. 1 boinc boinc     10337 Nov 18 11:44 heartbeat.json
[2025-11-18 11:45:19] -rw-r--r--. 1 boinc boinc        23 Nov 18 11:45 wrapper_checkpoint.txt
[2025-11-18 11:45:19] -rw-------. 1 boinc boinc        95 Nov 18 11:45 pilot_heartbeat.json
[2025-11-18 11:45:19] -rw-------. 1 boinc boinc      4823 Nov 18 11:45 pilotlog.txt
[2025-11-18 11:45:19] -rw-r--r--. 1 boinc boinc      8192 Nov 18 11:45 boinc_mmap_file
[2025-11-18 11:45:19] -rw-------. 1 boinc boinc    101657 Nov 18 11:45 log.47493068._005541.job.log.1
[2025-11-18 11:45:19] -rw-------. 1 boinc boinc       186 Nov 18 11:45 output.list
[2025-11-18 11:45:19] -rw-r--r--. 1 boinc boinc       620 Nov 18 11:45 runtime_log
[2025-11-18 11:45:19] -rw-------. 1 boinc boinc    174080 Nov 18 11:45 result.tar.gz
[2025-11-18 11:45:19] -rw-r--r--. 1 boinc boinc      8528 Nov 18 11:45 runtime_log.err
[2025-11-18 11:45:19] -rw-------. 1 boinc boinc       645 Nov 18 11:45 jCsKDm2Cff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm49FKDm1t5pRm.diag
[2025-11-18 11:45:19] -rw-r--r--. 1 boinc boinc     22472 Nov 18 11:45 stderr.txt
[2025-11-18 11:45:19] No HITS result produced
[2025-11-18 11:45:19]  *** Contents of shared directory: ***
[2025-11-18 11:45:19] total 401680
[2025-11-18 11:45:19] -rw-r--r--. 2 boinc boinc 410530311 Nov 18 11:39 ATLAS.root_0
[2025-11-18 11:45:19] -rw-r--r--. 2 boinc boinc     15120 Nov 18 11:39 start_atlas.sh
[2025-11-18 11:45:19] -rw-r--r--. 2 boinc boinc    590093 Nov 18 11:39 input.tar.gz
[2025-11-18 11:45:19] -rw-------. 1 boinc boinc    174080 Nov 18 11:45 result.tar.gz
11:45:20 (3858459): run_atlas exited; CPU time 77.602148
11:45:20 (3858459): called boinc_finish(0)

</stderr_txt>
]]>

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