Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:58:28 (11798): wrapper (7.7.26015): starting
22:58:28 (11798): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 22:58:28] Arguments: --nthreads 8
[2025-11-20 22:58:28] Threads: 8
[2025-11-20 22:58:28] Checking for CVMFS
[2025-11-20 22:58:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 22:58:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 22:58:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 22:58:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 22:58:29] 2.11.2.0 32329 277250 146616 153088 0 294 14427799 25165824 3520 130560 3 137144609 99.886 80045635 3151 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-20 22:58:29] CVMFS is ok
[2025-11-20 22:58:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 22:58:29] Checking for apptainer binary...
[2025-11-20 22:58:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 22:58:29] Running /usr/bin/apptainer --version
[2025-11-20 22:58:29] apptainer version 1.3.2-1.el7
[2025-11-20 22:58:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 22:58:30] cg-vwn362.simple-grid.lan
[2025-11-20 22:58:30] apptainer works
[2025-11-20 22:58:30] Set ATHENA_PROC_NUMBER=8
[2025-11-20 22:58:30] Set ATHENA_CORE_NUMBER=8
[2025-11-20 22:58:30] Starting ATLAS job with PandaID=6891571528
[2025-11-20 22:58:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 00:01:43]  *** The last 200 lines of the pilot log: ***
[2025-11-22 00:01:43] 2025-11-21 23:00:25,612 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 00:01:43] 2025-11-21 23:00:26,891 | INFO     | time since job start (90091s) is within the limit (172800.0s)
[2025-11-22 00:01:43] 2025-11-21 23:00:28,131 | INFO     | monitor loop #6021: job 0:6891571528 is in state 'finished'
[2025-11-22 00:01:43] 2025-11-21 23:00:28,131 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 00:01:43] 2025-11-21 23:00:28,899 | INFO     | time since job start (90093s) is within the limit (172800.0s)
[2025-11-22 00:01:43] 2025-11-21 23:00:30,646 | INFO     | monitor loop #6022: job 0:6891571528 is in state 'finished'
[2025-11-22 00:01:43] 2025-11-21 23:00:30,646 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 00:01:43] 2025-11-21 23:00:30,910 | INFO     | time since job start (90095s) is within the limit (172800.0s)
[2025-11-22 00:01:43] 2025-11-21 23:00:32,918 | INFO     | time since job start (90097s) is within the limit (172800.0s)
[2025-11-22 00:01:43] 2025-11-21 23:00:33,151 | INFO     | monitor loop #6023: job 0:6891571528 is in state 'finished'
[2025-11-22 00:01:43] 2025-11-21 23:00:33,151 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 00:01:43] 2025-11-21 23:00:34,925 | INFO     | time since job start (90099s) is within the limit (172800.0s)
[2025-11-22 00:01:43] 2025-11-21 23:00:35,659 | INFO     | monitor loop #6024: job 0:6891571528 is in state 'finished'
[2025-11-22 00:01:43] 2025-11-21 23:00:35,659 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 00:01:43] 2025-11-21 23:00:36,398 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 00:01:43] 2025-11-21 23:00:36,399 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-22 00:01:43] 2025-11-21 23:00:36,401 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6891571528/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 00:01:43] 2025-11-21 23:00:36,402 | INFO     | extracted standard info from prmon json
[2025-11-22 00:01:43] 2025-11-21 23:00:36,402 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 00:01:43] 2025-11-21 23:00:36,403 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 00:01:43] 2025-11-21 23:00:36,440 | INFO     | fitting pss+swap vs Time
[2025-11-22 00:01:43] 2025-11-21 23:00:36,443 | INFO     | sum of square deviations: 993047845231.6105
[2025-11-22 00:01:43] 2025-11-21 23:00:36,533 | INFO     | sum of deviations: 2530481898012.2437
[2025-11-22 00:01:43] 2025-11-21 23:00:36,533 | INFO     | mean x: 1763720942.8324287
[2025-11-22 00:01:43] 2025-11-21 23:00:36,533 | INFO     | mean y: 2863979.547489824
[2025-11-22 00:01:43] 2025-11-21 23:00:36,534 | INFO     | intersect: -4491445071.535158
[2025-11-22 00:01:43] 2025-11-21 23:00:36,536 | INFO     | chi2: 16.16050041293975
[2025-11-22 00:01:43] 2025-11-21 23:00:36,538 | INFO     | sum of square deviations: 982977027500.2023
[2025-11-22 00:01:43] 2025-11-21 23:00:36,623 | INFO     | sum of deviations: 3017358612450.115
[2025-11-22 00:01:43] 2025-11-21 23:00:36,623 | INFO     | mean x: 1763720790.336964
[2025-11-22 00:01:43] 2025-11-21 23:00:36,624 | INFO     | mean y: 2871351.102791014
[2025-11-22 00:01:43] 2025-11-21 23:00:36,624 | INFO     | intersect: -5411068108.107477
[2025-11-22 00:01:43] 2025-11-21 23:00:36,626 | INFO     | chi2: 12.99051209076092
[2025-11-22 00:01:43] 2025-11-21 23:00:36,626 | INFO     | current chi2=12.99051209076092 (change=19.6156569485968 %)
[2025-11-22 00:01:43] 2025-11-21 23:00:36,626 | INFO     | right removable region: 1468
[2025-11-22 00:01:43] 2025-11-21 23:00:36,628 | INFO     | sum of square deviations: 982975829460.2023
[2025-11-22 00:01:43] 2025-11-21 23:00:36,724 | INFO     | sum of deviations: 2019970843494.9038
[2025-11-22 00:01:43] 2025-11-21 23:00:36,724 | INFO     | mean x: 1763721095.336964
[2025-11-22 00:01:43] 2025-11-21 23:00:36,725 | INFO     | mean y: 2871706.579986385
[2025-11-22 00:01:43] 2025-11-21 23:00:36,725 | INFO     | intersect: -3621495324.4933896
[2025-11-22 00:01:43] 2025-11-21 23:00:36,727 | INFO     | chi2: 13.0282028652707
[2025-11-22 00:01:43] 2025-11-21 23:00:36,727 | INFO     | current chi2=13.0282028652707 (change=19.382429179983887 %)
[2025-11-22 00:01:43] 2025-11-21 23:00:36,727 | INFO     | left removable region: 10
[2025-11-22 00:01:43] 2025-11-21 23:00:36,729 | INFO     | sum of square deviations: 961059550739.0305
[2025-11-22 00:01:43] 2025-11-21 23:00:36,810 | INFO     | sum of deviations: 2462594983809.4893
[2025-11-22 00:01:43] 2025-11-21 23:00:36,810 | INFO     | mean x: 1763721064.8429356
[2025-11-22 00:01:43] 2025-11-21 23:00:36,811 | INFO     | mean y: 2882986.120027435
[2025-11-22 00:01:43] 2025-11-21 23:00:36,811 | INFO     | intersect: -4516431809.494285
[2025-11-22 00:01:43] 2025-11-21 23:00:36,812 | INFO     | chi2: 8.876452588369485
[2025-11-22 00:01:43] 2025-11-21 23:00:36,813 | INFO     | current memory leak: 2.56 B/s (using 1458 data points, chi2=8.88)
[2025-11-22 00:01:43] 2025-11-21 23:00:36,815 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-22 00:01:43] 2025-11-21 23:00:36,816 | INFO     | ..............................
[2025-11-22 00:01:43] 2025-11-21 23:00:36,816 | INFO     | . Timing measurements:
[2025-11-22 00:01:43] 2025-11-21 23:00:36,816 | INFO     | . get job = 0 s
[2025-11-22 00:01:43] 2025-11-21 23:00:36,816 | INFO     | . initial setup = 2 s
[2025-11-22 00:01:43] 2025-11-21 23:00:36,816 | INFO     | . payload setup = 19 s
[2025-11-22 00:01:43] 2025-11-21 23:00:36,816 | INFO     | . stage-in = 0 s
[2025-11-22 00:01:43] 2025-11-21 23:00:36,816 | INFO     | . payload execution = 89932 s
[2025-11-22 00:01:43] 2025-11-21 23:00:36,816 | INFO     | . stage-out = 5 s
[2025-11-22 00:01:43] 2025-11-21 23:00:36,816 | INFO     | . log creation = 1 s
[2025-11-22 00:01:43] 2025-11-21 23:00:36,816 | INFO     | ..............................
[2025-11-22 00:01:43] 2025-11-21 23:00:36,953 | INFO     | time since job start (90101s) is within the limit (172800.0s)
[2025-11-22 00:01:43] 2025-11-21 23:00:36,964 | INFO     | 
[2025-11-22 00:01:43] 2025-11-21 23:00:36,964 | INFO     | job summary report
[2025-11-22 00:01:43] 2025-11-21 23:00:36,964 | INFO     | --------------------------------------------------
[2025-11-22 00:01:43] 2025-11-21 23:00:36,964 | INFO     | PanDA job id: 6891571528
[2025-11-22 00:01:43] 2025-11-21 23:00:36,965 | INFO     | task id: 47493068
[2025-11-22 00:01:43] 2025-11-21 23:00:36,965 | INFO     | errors: (none)
[2025-11-22 00:01:43] 2025-11-21 23:00:36,965 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 00:01:43] 2025-11-21 23:00:36,965 | INFO     | pilot state: finished 
[2025-11-22 00:01:43] 2025-11-21 23:00:36,965 | INFO     | transexitcode: 0
[2025-11-22 00:01:43] 2025-11-21 23:00:36,965 | INFO     | exeerrorcode: 0
[2025-11-22 00:01:43] 2025-11-21 23:00:36,965 | INFO     | exeerrordiag: 
[2025-11-22 00:01:43] 2025-11-21 23:00:36,965 | INFO     | exitcode: 0
[2025-11-22 00:01:43] 2025-11-21 23:00:36,965 | INFO     | exitmsg: OK
[2025-11-22 00:01:43] 2025-11-21 23:00:36,965 | INFO     | cpuconsumptiontime: 340189 s
[2025-11-22 00:01:43] 2025-11-21 23:00:36,966 | INFO     | nevents: 1000
[2025-11-22 00:01:43] 2025-11-21 23:00:36,966 | INFO     | neventsw: 0
[2025-11-22 00:01:43] 2025-11-21 23:00:36,966 | INFO     | pid: 29445
[2025-11-22 00:01:43] 2025-11-21 23:00:36,966 | INFO     | pgrp: 29445
[2025-11-22 00:01:43] 2025-11-21 23:00:36,966 | INFO     | corecount: 8
[2025-11-22 00:01:43] 2025-11-21 23:00:36,966 | INFO     | event service: False
[2025-11-22 00:01:43] 2025-11-21 23:00:36,966 | INFO     | sizes: {0: 2297968, 1: 2298653, 2: 2298852, 12: 2298852, 15: 2299142, 23: 2299170, 89955: 2362935, 89962: 2371929, 89963: 2371985, 90063: 2372231}
[2025-11-22 00:01:43] 2025-11-21 23:00:36,966 | INFO     | --------------------------------------------------
[2025-11-22 00:01:43] 2025-11-21 23:00:36,966 | INFO     | 
[2025-11-22 00:01:43] 2025-11-21 23:00:36,967 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-11-22 00:01:43] 2025-11-21 23:00:37,187 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 00:01:43] 2025-11-21 23:00:37,188 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 00:01:43] 2025-11-21 23:00:37,188 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 00:01:43] 2025-11-21 23:00:37,188 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 00:01:43] 2025-11-21 23:00:37,188 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 00:01:43] 2025-11-21 23:00:37,188 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 00:01:43] 2025-11-21 23:00:37,188 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 00:01:43] 2025-11-21 23:00:37,188 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 00:01:43] 2025-11-21 23:00:37,188 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 00:01:43] 2025-11-21 23:00:37,189 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 00:01:43] 2025-11-21 23:00:37,189 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 00:01:43] 2025-11-21 23:00:37,189 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 00:01:43] 2025-11-21 23:00:37,189 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 00:01:43] 2025-11-21 23:00:37,189 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 00:01:43] 2025-11-21 23:00:37,189 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 00:01:43] 2025-11-21 23:00:37,189 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 00:01:43] 2025-11-21 23:00:37,189 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 00:01:43] 2025-11-21 23:00:37,189 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 00:01:43] 2025-11-21 23:00:37,189 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 00:01:43] 2025-11-21 23:00:37,190 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 00:01:43] 2025-11-21 23:00:37,190 | INFO     | job 6891571528 has completed (purged errors)
[2025-11-22 00:01:43] 2025-11-21 23:00:37,190 | INFO     | overall cleanup function is called
[2025-11-22 00:01:43] 2025-11-21 23:00:38,215 | INFO     | --- collectZombieJob: --- 10, [29445]
[2025-11-22 00:01:43] 2025-11-21 23:00:38,215 | INFO     | zombie collector waiting for pid 29445
[2025-11-22 00:01:43] 2025-11-21 23:00:38,215 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 00:01:43] 2025-11-21 23:00:38,215 | INFO     | collected zombie processes
[2025-11-22 00:01:43] 2025-11-21 23:00:38,215 | INFO     | will attempt to kill all subprocesses of pid=29445
[2025-11-22 00:01:43] 2025-11-21 23:00:38,325 | INFO     | process IDs to be killed: [29445] (in reverse order)
[2025-11-22 00:01:43] 2025-11-21 23:00:39,047 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 00:01:43] 2025-11-21 23:00:39,048 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 00:01:43] 2025-11-21 23:00:39,052 | INFO     | did not find any defunct processes belonging to 29445
[2025-11-22 00:01:43] 2025-11-21 23:00:39,055 | INFO     | did not find any defunct processes belonging to 29445
[2025-11-22 00:01:43] 2025-11-21 23:00:39,069 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 00:01:43] 2025-11-21 23:00:39,069 | INFO     | ready for new job
[2025-11-22 00:01:43] 2025-11-21 23:00:39,070 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 00:01:43] 2025-11-21 23:00:39,076 | INFO     | ***************************************
[2025-11-22 00:01:43] 2025-11-21 23:00:39,077 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 00:01:43] 2025-11-21 23:00:39,077 | INFO     | ***************************************
[2025-11-22 00:01:43] 2025-11-21 23:00:39,077 | INFO     | 
[2025-11-22 00:01:43] 2025-11-21 23:00:39,078 | INFO     | pilot is running in a VM
[2025-11-22 00:01:43] 2025-11-21 23:00:39,078 | INFO     | architecture information:
[2025-11-22 00:01:43] 2025-11-21 23:00:39,081 | INFO     | executing command: cat /etc/os-release
[2025-11-22 00:01:43] 2025-11-21 23:00:39,330 | INFO     | cat /etc/os-release:
[2025-11-22 00:01:43] NAME="CentOS Linux"
[2025-11-22 00:01:43] VERSION="7 (Core)"
[2025-11-22 00:01:43] ID="centos"
[2025-11-22 00:01:43] ID_LIKE="rhel fedora"
[2025-11-22 00:01:43] VERSION_ID="7"
[2025-11-22 00:01:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 00:01:43] ANSI_COLOR="0;31"
[2025-11-22 00:01:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 00:01:43] HOME_URL="https://www.centos.org/"
[2025-11-22 00:01:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 00:01:43] 
[2025-11-22 00:01:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 00:01:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 00:01:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 00:01:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 00:01:43] 
[2025-11-22 00:01:43] 2025-11-21 23:00:39,330 | INFO     | ***************************************
[2025-11-22 00:01:43] 2025-11-21 23:00:39,834 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-11-22 00:01:43] 2025-11-21 23:00:40,084 | INFO     | sufficient remaining disk space (495006515200 B)
[2025-11-22 00:01:43] 2025-11-21 23:00:40,085 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 00:01:43] 2025-11-21 23:00:40,085 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 00:01:43] 2025-11-21 23:00:40,085 | INFO     | update_server=False
[2025-11-22 00:01:43] 2025-11-21 23:00:40,085 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 00:01:43] 2025-11-21 23:00:40,086 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 00:01:43] 2025-11-21 23:00:40,086 | INFO     | aborting loop
[2025-11-22 00:01:43] 2025-11-21 23:00:40,145 | INFO     | all payload control threads have been joined
[2025-11-22 00:01:43] 2025-11-21 23:00:40,777 | INFO     | all data control threads have been joined
[2025-11-22 00:01:43] 2025-11-21 23:00:41,091 | INFO     | [job] retrieve thread has finished
[2025-11-22 00:01:43] 2025-11-21 23:00:41,092 | INFO     | [job] job monitor thread has finished
[2025-11-22 00:01:43] 2025-11-21 23:00:41,145 | INFO     | all job control threads have been joined
[2025-11-22 00:01:43] 2025-11-21 23:00:41,151 | INFO     | [payload] control thread has finished
[2025-11-22 00:01:43] 2025-11-21 23:00:41,233 | INFO     | [payload] validate_post thread has finished
[2025-11-22 00:01:43] 2025-11-21 23:00:41,296 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 00:01:43] 2025-11-21 23:00:41,499 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 00:01:43] 2025-11-21 23:00:41,537 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 00:01:43] 2025-11-21 23:00:41,609 | INFO     | [job] validate thread has finished
[2025-11-22 00:01:43] 2025-11-21 23:00:41,783 | INFO     | [data] control thread has finished
[2025-11-22 00:01:43] 2025-11-21 23:00:41,978 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 00:01:43] 2025-11-21 23:00:42,116 | INFO     | [data] copytool_in thread has finished
[2025-11-22 00:01:43] 2025-11-21 23:00:42,141 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 00:01:43] 2025-11-21 23:00:42,151 | INFO     | [job] control thread has finished
[2025-11-22 00:01:43] 2025-11-21 23:00:42,274 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 00:01:43] 2025-11-21 23:00:42,608 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 00:01:43] 2025-11-21 23:00:42,652 | INFO     | [payload] failed_post thread has finished
[2025-11-22 00:01:43] 2025-11-21 23:00:42,984 | INFO     | [job] queue monitor thread has finished
[2025-11-22 00:01:43] 2025-11-21 23:00:43,303 | INFO     | [data] copytool_out thread has finished
[2025-11-22 00:01:43] 2025-11-21 23:00:46,617 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 00:01:43] 2025-11-21 23:01:08,982 | INFO     | 90106s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-22 00:01:43] 2025-11-21 23:01:10,138 | INFO     | PID=15541 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 00:01:43] 2025-11-21 23:01:10,138 | INFO     | .. there are 9 such processes running
[2025-11-22 00:01:43] 2025-11-21 23:01:10,139 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 00:01:43] 2025-11-21 23:01:10,140 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 00:01:43] 2025-11-21 23:01:10,140 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 00:01:43] 2025-11-21 23:01:32,436 | INFO     | [monitor] cgroup control has ended
[2025-11-22 00:01:43] 2025-11-21 23:01:32,536 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140564386105152)>', '<ExcThread(monitor, started 140563668002560)>']
[2025-11-22 00:01:43] 2025-11-21 23:01:33,280 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 00:01:43] 2025-11-21 23:01:33,280 | INFO     | [monitor] control thread has ended
[2025-11-22 00:01:43] 2025-11-21 23:01:37,562 | INFO     | all workflow threads have been joined
[2025-11-22 00:01:43] 2025-11-21 23:01:37,562 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 00:01:43] 2025-11-21 23:01:37,562 | INFO     | traces error code: 0
[2025-11-22 00:01:43] 2025-11-21 23:01:37,563 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 00:01:43] 2025-11-21 23:01:38,121 [wrapper] ==== pilot stdout END ====
[2025-11-22 00:01:43] 2025-11-21 23:01:38,227 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 00:01:43] 2025-11-21 23:01:38,322 [wrapper] pilotpid: 15541
[2025-11-22 00:01:43] 2025-11-21 23:01:38,415 [wrapper] Pilot exit status: 0
[2025-11-22 00:01:43] 2025-11-21 23:01:38,811 [wrapper] pandaids: 6891571528
[2025-11-22 00:01:43] 2025-11-21 23:01:39,821 [wrapper] cleanup supervisor_pilot 28711 15542
[2025-11-22 00:01:43] 2025-11-21 23:01:39,933 [wrapper] Test setup, not cleaning
[2025-11-22 00:01:43] 2025-11-21 23:01:40,055 [wrapper] apfmon messages muted
[2025-11-22 00:01:43] 2025-11-21 23:01:40,150 [wrapper] ==== wrapper stdout END ====
[2025-11-22 00:01:43] 2025-11-21 23:01:40,248 [wrapper] ==== wrapper stderr END ====
[2025-11-22 00:01:43]  *** Error codes and diagnostics ***
[2025-11-22 00:01:43]     "exeErrorCode": 0,
[2025-11-22 00:01:43]     "exeErrorDiag": "",
[2025-11-22 00:01:43]     "pilotErrorCode": 0,
[2025-11-22 00:01:43]     "pilotErrorDiag": "",
[2025-11-22 00:01:43]  *** Listing of results directory ***
[2025-11-22 00:01:43] total 1336124
[2025-11-22 00:01:43] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:47 pilot3.tar.gz
[2025-11-22 00:01:43] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:52 queuedata.json
[2025-11-22 00:01:43] -rwx------. 1 boinc boinc     36292 Nov 18 16:53 runpilot2-wrapper.sh
[2025-11-22 00:01:43] -rw-r--r--. 1 boinc boinc       100 Nov 20 22:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 00:01:43] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 22:58 run_atlas
[2025-11-22 00:01:43] -rw-r--r--. 1 boinc boinc       105 Nov 20 22:58 job.xml
[2025-11-22 00:01:43] -rw-r--r--. 2 boinc boinc 407383515 Nov 20 22:58 EVNT.47493065._000286.pool.root.1
[2025-11-22 00:01:43] -rw-r--r--. 1 boinc boinc      6391 Nov 20 22:58 init_data.xml
[2025-11-22 00:01:43] -rw-r--r--. 2 boinc boinc     15120 Nov 20 22:58 start_atlas.sh
[2025-11-22 00:01:43] drwxrwx--x. 2 boinc boinc        68 Nov 20 22:58 shared
[2025-11-22 00:01:43] -rw-r--r--. 2 boinc boinc    590102 Nov 20 22:58 input.tar.gz
[2025-11-22 00:01:43] -rw-r--r--. 1 boinc boinc         0 Nov 20 22:58 boinc_lockfile
[2025-11-22 00:01:43] -rw-r--r--. 1 boinc boinc      2773 Nov 20 22:58 pandaJob.out
[2025-11-22 00:01:43] -rw-------. 1 boinc boinc    989440 Nov 20 22:58 agis_schedconf.cvmfs.json
[2025-11-22 00:01:43] drwx------. 5 boinc boinc      4096 Nov 20 22:58 pilot3
[2025-11-22 00:01:43] -rw-r--r--. 1 boinc boinc       533 Nov 21 23:35 boinc_task_state.xml
[2025-11-22 00:01:43] -rw-------. 1 boinc boinc 927817563 Nov 21 23:57 HITS.47493068._002858.pool.root.1
[2025-11-22 00:01:43] -rw-------. 1 boinc boinc      1034 Nov 21 23:58 memory_monitor_summary.json
[2025-11-22 00:01:43] -rw-------. 1 boinc boinc   1526164 Nov 21 23:58 agis_ddmendpoints.agis.ALL.json
[2025-11-22 00:01:43] -rw-------. 1 boinc boinc   2542950 Nov 21 23:58 log.47493068._002858.job.log.tgz.1
[2025-11-22 00:01:43] -rw-------. 1 boinc boinc      8629 Nov 22 00:00 heartbeat.json
[2025-11-22 00:01:43] -rw-------. 1 boinc boinc        95 Nov 22 00:01 pilot_heartbeat.json
[2025-11-22 00:01:43] -rw-------. 1 boinc boinc      5000 Nov 22 00:01 pilotlog.txt
[2025-11-22 00:01:43] -rw-r--r--. 1 boinc boinc        29 Nov 22 00:01 wrapper_checkpoint.txt
[2025-11-22 00:01:43] -rw-r--r--. 1 boinc boinc      8192 Nov 22 00:01 boinc_mmap_file
[2025-11-22 00:01:43] -rw-------. 1 boinc boinc  12001727 Nov 22 00:01 log.47493068._002858.job.log.1
[2025-11-22 00:01:43] -rw-------. 1 boinc boinc       353 Nov 22 00:01 output.list
[2025-11-22 00:01:43] -rw-r--r--. 1 boinc boinc       620 Nov 22 00:01 runtime_log
[2025-11-22 00:01:43] -rw-------. 1 boinc boinc  14561280 Nov 22 00:01 result.tar.gz
[2025-11-22 00:01:43] -rw-r--r--. 1 boinc boinc      8703 Nov 22 00:01 runtime_log.err
[2025-11-22 00:01:43] -rw-------. 1 boinc boinc       662 Nov 22 00:01 lzNLDmaCdf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkhFKDm4tw0Xn.diag
[2025-11-22 00:01:43] -rw-r--r--. 1 boinc boinc     21434 Nov 22 00:01 stderr.txt
[2025-11-22 00:01:43] HITS file was successfully produced:
[2025-11-22 00:01:43] -rw-------. 1 boinc boinc 927817563 Nov 21 23:57 shared/HITS.pool.root.1
[2025-11-22 00:01:43]  *** Contents of shared directory: ***
[2025-11-22 00:01:43] total 1318724
[2025-11-22 00:01:43] -rw-r--r--. 2 boinc boinc 407383515 Nov 20 22:58 ATLAS.root_0
[2025-11-22 00:01:43] -rw-r--r--. 2 boinc boinc     15120 Nov 20 22:58 start_atlas.sh
[2025-11-22 00:01:43] -rw-r--r--. 2 boinc boinc    590102 Nov 20 22:58 input.tar.gz
[2025-11-22 00:01:43] -rw-------. 1 boinc boinc 927817563 Nov 21 23:57 HITS.pool.root.1
[2025-11-22 00:01:43] -rw-------. 1 boinc boinc  14561280 Nov 22 00:01 result.tar.gz
00:01:45 (11798): run_atlas exited; CPU time 340659.916077
00:01:45 (11798): called boinc_finish(0)

</stderr_txt>
]]>

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