Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
00:55:23 (2053456): wrapper (7.7.26015): starting
00:55:23 (2053456): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 00:55:23] Arguments: --nthreads 12
[2025-11-22 00:55:23] Threads: 12
[2025-11-22 00:55:23] Checking for CVMFS
[2025-11-22 00:55:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 00:55:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 00:55:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 00:55:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 00:55:23] 2.13.3.0 3939660 3984 59368 153129 1 81 4260143 6144001 0 130560 0 1615494 99.849 322298 85 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-22 00:55:23] CVMFS is ok
[2025-11-22 00:55:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 00:55:23] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-22 00:55:23] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-22 00:55:23] Further information can be found at the LHC@home message board.
[2025-11-22 00:55:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 00:55:23] Checking for apptainer binary...
[2025-11-22 00:55:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 00:55:23] Running /usr/bin/apptainer --version
[2025-11-22 00:55:23] apptainer version 1.4.4
[2025-11-22 00:55:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 00:55:23] MINIPC-PN51-E1
[2025-11-22 00:55:23] apptainer works
[2025-11-22 00:55:23] Set ATHENA_PROC_NUMBER=12
[2025-11-22 00:55:23] Set ATHENA_CORE_NUMBER=12
[2025-11-22 00:55:23] Starting ATLAS job with PandaID=6891558291
[2025-11-22 00:55:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
06:48:58 (7485): wrapper (7.7.26015): starting
06:48:58 (7485): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 06:48:58] Arguments: --nthreads 12
[2025-11-22 06:48:58] Threads: 12
[2025-11-22 06:48:58] This job has been restarted, cleaning up previous attempt
[2025-11-22 06:48:58] Checking for CVMFS
[2025-11-22 06:49:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 06:49:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 06:49:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 06:49:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 06:49:29] 2.13.3.0 9091 0 31520 153141 3 1 4298393 6144000 0 130560 0 0 100.000 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-22 06:49:29] CVMFS is ok
[2025-11-22 06:49:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 06:49:29] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-22 06:49:29] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-22 06:49:29] Further information can be found at the LHC@home message board.
[2025-11-22 06:49:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 06:49:29] Checking for apptainer binary...
[2025-11-22 06:49:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 06:49:29] Running /usr/bin/apptainer --version
[2025-11-22 06:49:29] apptainer version 1.4.4
[2025-11-22 06:49:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 06:49:29] MINIPC-PN51-E1
[2025-11-22 06:49:29] apptainer works
[2025-11-22 06:49:29] Set ATHENA_PROC_NUMBER=12
[2025-11-22 06:49:29] Set ATHENA_CORE_NUMBER=12
[2025-11-22 06:49:29] Starting ATLAS job with PandaID=6891558291
[2025-11-22 06:49:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 13:21:03]  *** The last 200 lines of the pilot log: ***
[2025-11-22 13:21:03] 2025-11-22 02:20:23,050 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 13:21:03] 2025-11-22 02:20:23,055 | INFO     | fitting pss+swap vs Time
[2025-11-22 13:21:03] 2025-11-22 02:20:23,056 | INFO     | sum of square deviations: 17420992579.154114
[2025-11-22 13:21:03] 2025-11-22 02:20:23,059 | INFO     | sum of deviations: 438995928022.8383
[2025-11-22 13:21:03] 2025-11-22 02:20:23,059 | INFO     | mean x: 1763766292.9530027
[2025-11-22 13:21:03] 2025-11-22 02:20:23,059 | INFO     | mean y: 3415264.8798955614
[2025-11-22 13:21:03] 2025-11-22 02:20:23,059 | INFO     | intersect: -44442170546.161224
[2025-11-22 13:21:03] 2025-11-22 02:20:23,060 | INFO     | chi2: 9.794087639755725
[2025-11-22 13:21:03] 2025-11-22 02:20:23,061 | INFO     | sum of square deviations: 16747686622.052832
[2025-11-22 13:21:03] 2025-11-22 02:20:23,062 | INFO     | sum of deviations: 597603826077.3014
[2025-11-22 13:21:03] 2025-11-22 02:20:23,062 | INFO     | mean x: 1763766140.4656084
[2025-11-22 13:21:03] 2025-11-22 02:20:23,062 | INFO     | mean y: 3451196.753968254
[2025-11-22 13:21:03] 2025-11-22 02:20:23,062 | INFO     | intersect: -62932607832.433044
[2025-11-22 13:21:03] 2025-11-22 02:20:23,063 | INFO     | chi2: 6.380086301241589
[2025-11-22 13:21:03] 2025-11-22 02:20:23,063 | INFO     | current chi2=6.380086301241589 (change=34.857778121733084 %)
[2025-11-22 13:21:03] 2025-11-22 02:20:23,063 | INFO     | sum of square deviations: 16091916641.732002
[2025-11-22 13:21:03] 2025-11-22 02:20:23,064 | INFO     | sum of deviations: 644281754464.0768
[2025-11-22 13:21:03] 2025-11-22 02:20:23,065 | INFO     | mean x: 1763765987.9731903
[2025-11-22 13:21:03] 2025-11-22 02:20:23,065 | INFO     | mean y: 3461944.707774799
[2025-11-22 13:21:03] 2025-11-22 02:20:23,065 | INFO     | intersect: -70613498762.66039
[2025-11-22 13:21:03] 2025-11-22 02:20:23,065 | INFO     | chi2: 5.4377983459017125
[2025-11-22 13:21:03] 2025-11-22 02:20:23,065 | INFO     | current chi2=5.4377983459017125 (change=14.76920390804908 %)
[2025-11-22 13:21:03] 2025-11-22 02:20:23,065 | INFO     | right removable region: 372
[2025-11-22 13:21:03] 2025-11-22 02:20:23,065 | INFO     | sum of square deviations: 16747463972.052834
[2025-11-22 13:21:03] 2025-11-22 02:20:23,067 | INFO     | sum of deviations: 280776754583.25397
[2025-11-22 13:21:03] 2025-11-22 02:20:23,067 | INFO     | mean x: 1763766445.4656084
[2025-11-22 13:21:03] 2025-11-22 02:20:23,067 | INFO     | mean y: 3451065.634920635
[2025-11-22 13:21:03] 2025-11-22 02:20:23,067 | INFO     | intersect: -29566674848.776752
[2025-11-22 13:21:03] 2025-11-22 02:20:23,068 | INFO     | chi2: 6.62633725400223
[2025-11-22 13:21:03] 2025-11-22 02:20:23,068 | INFO     | current chi2=6.62633725400223 (change=32.3434964263042 %)
[2025-11-22 13:21:03] 2025-11-22 02:20:23,068 | INFO     | sum of square deviations: 16091517089.828363
[2025-11-22 13:21:03] 2025-11-22 02:20:23,069 | INFO     | sum of deviations: 149696612153.75607
[2025-11-22 13:21:03] 2025-11-22 02:20:23,070 | INFO     | mean x: 1763766597.9785523
[2025-11-22 13:21:03] 2025-11-22 02:20:23,070 | INFO     | mean y: 3481524.8445040216
[2025-11-22 13:21:03] 2025-11-22 02:20:23,070 | INFO     | intersect: -16404535374.583927
[2025-11-22 13:21:03] 2025-11-22 02:20:23,070 | INFO     | chi2: 4.604360910535645
[2025-11-22 13:21:03] 2025-11-22 02:20:23,070 | INFO     | current chi2=4.604360910535645 (change=30.514238348573876 %)
[2025-11-22 13:21:03] 2025-11-22 02:20:23,070 | INFO     | sum of square deviations: 15453033139.826075
[2025-11-22 13:21:03] 2025-11-22 02:20:23,072 | INFO     | sum of deviations: 120100908767.08687
[2025-11-22 13:21:03] 2025-11-22 02:20:23,072 | INFO     | mean x: 1763766750.4782608
[2025-11-22 13:21:03] 2025-11-22 02:20:23,072 | INFO     | mean y: 3488582.8858695654
[2025-11-22 13:21:03] 2025-11-22 02:20:23,072 | INFO     | intersect: -13704499206.23467
[2025-11-22 13:21:03] 2025-11-22 02:20:23,072 | INFO     | chi2: 4.547232080696973
[2025-11-22 13:21:03] 2025-11-22 02:20:23,072 | INFO     | current chi2=4.547232080696973 (change=1.2407548180671621 %)
[2025-11-22 13:21:03] 2025-11-22 02:20:23,072 | INFO     | left removable region: 30
[2025-11-22 13:21:03] 2025-11-22 02:20:23,072 | INFO     | sum of square deviations: 12403750705.5
[2025-11-22 13:21:03] 2025-11-22 02:20:23,074 | INFO     | sum of deviations: 274566686359.0
[2025-11-22 13:21:03] 2025-11-22 02:20:23,074 | INFO     | mean x: 1763766872.5
[2025-11-22 13:21:03] 2025-11-22 02:20:23,074 | INFO     | mean y: 3551839.847953216
[2025-11-22 13:21:03] 2025-11-22 02:20:23,074 | INFO     | intersect: -39038802137.596054
[2025-11-22 13:21:03] 2025-11-22 02:20:23,074 | INFO     | chi2: 0.048913624528428234
[2025-11-22 13:21:03] 2025-11-22 02:20:23,074 | INFO     | current memory leak: 22.14 B/s (using 342 data points, chi2=0.05)
[2025-11-22 13:21:03] 2025-11-22 02:20:23,075 | INFO     | could have reported an average CPU frequency of 2596 MHz (16 samples)
[2025-11-22 13:21:03] 2025-11-22 02:20:23,075 | INFO     | ..............................
[2025-11-22 13:21:03] 2025-11-22 02:20:23,075 | INFO     | . Timing measurements:
[2025-11-22 13:21:03] 2025-11-22 02:20:23,075 | INFO     | . get job = 0 s
[2025-11-22 13:21:03] 2025-11-22 02:20:23,075 | INFO     | . initial setup = 5 s
[2025-11-22 13:21:03] 2025-11-22 02:20:23,076 | INFO     | . payload setup = 4 s
[2025-11-22 13:21:03] 2025-11-22 02:20:23,076 | INFO     | . stage-in = 0 s
[2025-11-22 13:21:03] 2025-11-22 02:20:23,076 | INFO     | . payload execution = 23349 s
[2025-11-22 13:21:03] 2025-11-22 02:20:23,076 | INFO     | . stage-out = 8 s
[2025-11-22 13:21:03] 2025-11-22 02:20:23,076 | INFO     | . log creation = 0 s
[2025-11-22 13:21:03] 2025-11-22 02:20:23,076 | INFO     | ..............................
[2025-11-22 13:21:03] 2025-11-22 02:20:23,131 | INFO     | 
[2025-11-22 13:21:03] 2025-11-22 02:20:23,131 | INFO     | job summary report
[2025-11-22 13:21:03] 2025-11-22 02:20:23,131 | INFO     | --------------------------------------------------
[2025-11-22 13:21:03] 2025-11-22 02:20:23,132 | INFO     | PanDA job id: 6891558291
[2025-11-22 13:21:03] 2025-11-22 02:20:23,132 | INFO     | task id: 47493068
[2025-11-22 13:21:03] 2025-11-22 02:20:23,132 | INFO     | errors: (none)
[2025-11-22 13:21:03] 2025-11-22 02:20:23,132 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 13:21:03] 2025-11-22 02:20:23,132 | INFO     | pilot state: finished 
[2025-11-22 13:21:03] 2025-11-22 02:20:23,132 | INFO     | transexitcode: 0
[2025-11-22 13:21:03] 2025-11-22 02:20:23,132 | INFO     | exeerrorcode: 0
[2025-11-22 13:21:03] 2025-11-22 02:20:23,132 | INFO     | exeerrordiag: 
[2025-11-22 13:21:03] 2025-11-22 02:20:23,132 | INFO     | exitcode: 0
[2025-11-22 13:21:03] 2025-11-22 02:20:23,132 | INFO     | exitmsg: OK
[2025-11-22 13:21:03] 2025-11-22 02:20:23,132 | INFO     | cpuconsumptiontime: 267837 s
[2025-11-22 13:21:03] 2025-11-22 02:20:23,132 | INFO     | nevents: 1000
[2025-11-22 13:21:03] 2025-11-22 02:20:23,132 | INFO     | neventsw: 0
[2025-11-22 13:21:03] 2025-11-22 02:20:23,132 | INFO     | pid: 25099
[2025-11-22 13:21:03] 2025-11-22 02:20:23,132 | INFO     | pgrp: 25099
[2025-11-22 13:21:03] 2025-11-22 02:20:23,132 | INFO     | corecount: 12
[2025-11-22 13:21:03] 2025-11-22 02:20:23,132 | INFO     | event service: False
[2025-11-22 13:21:03] 2025-11-22 02:20:23,132 | INFO     | sizes: {0: 2298792, 3: 2299054, 10: 2299082, 23357: 2334994, 23366: 2344044, 23390: 2344234}
[2025-11-22 13:21:03] 2025-11-22 02:20:23,132 | INFO     | --------------------------------------------------
[2025-11-22 13:21:03] 2025-11-22 02:20:23,132 | INFO     | 
[2025-11-22 13:21:03] 2025-11-22 02:20:23,132 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-11-22 13:21:03] 2025-11-22 02:20:23,154 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 13:21:03] 2025-11-22 02:20:23,155 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 13:21:03] 2025-11-22 02:20:23,155 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 13:21:03] 2025-11-22 02:20:23,155 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 13:21:03] 2025-11-22 02:20:23,155 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 13:21:03] 2025-11-22 02:20:23,155 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 13:21:03] 2025-11-22 02:20:23,155 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 13:21:03] 2025-11-22 02:20:23,155 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 13:21:03] 2025-11-22 02:20:23,155 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 13:21:03] 2025-11-22 02:20:23,155 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 13:21:03] 2025-11-22 02:20:23,155 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 13:21:03] 2025-11-22 02:20:23,155 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 13:21:03] 2025-11-22 02:20:23,155 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 13:21:03] 2025-11-22 02:20:23,155 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 13:21:03] 2025-11-22 02:20:23,155 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 13:21:03] 2025-11-22 02:20:23,155 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 13:21:03] 2025-11-22 02:20:23,155 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 13:21:03] 2025-11-22 02:20:23,155 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 13:21:03] 2025-11-22 02:20:23,155 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 13:21:03] 2025-11-22 02:20:23,155 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 13:21:03] 2025-11-22 02:20:23,156 | INFO     | job 6891558291 has completed (purged errors)
[2025-11-22 13:21:03] 2025-11-22 02:20:23,156 | INFO     | overall cleanup function is called
[2025-11-22 13:21:03] 2025-11-22 02:20:24,171 | INFO     | --- collectZombieJob: --- 10, [25099]
[2025-11-22 13:21:03] 2025-11-22 02:20:24,171 | INFO     | zombie collector waiting for pid 25099
[2025-11-22 13:21:03] 2025-11-22 02:20:24,171 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 13:21:03] 2025-11-22 02:20:24,171 | INFO     | collected zombie processes
[2025-11-22 13:21:03] 2025-11-22 02:20:24,171 | INFO     | will attempt to kill all subprocesses of pid=25099
[2025-11-22 13:21:03] 2025-11-22 02:20:24,246 | INFO     | process IDs to be killed: [25099] (in reverse order)
[2025-11-22 13:21:03] 2025-11-22 02:20:24,304 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 13:21:03] 2025-11-22 02:20:24,305 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 13:21:03] 2025-11-22 02:20:24,308 | INFO     | did not find any defunct processes belonging to 25099
[2025-11-22 13:21:03] 2025-11-22 02:20:24,312 | INFO     | did not find any defunct processes belonging to 25099
[2025-11-22 13:21:03] 2025-11-22 02:20:24,314 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 13:21:03] 2025-11-22 02:20:24,315 | INFO     | ready for new job
[2025-11-22 13:21:03] 2025-11-22 02:20:24,315 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 13:21:03] 2025-11-22 02:20:24,317 | INFO     | ***************************************
[2025-11-22 13:21:03] 2025-11-22 02:20:24,317 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 13:21:03] 2025-11-22 02:20:24,317 | INFO     | ***************************************
[2025-11-22 13:21:03] 2025-11-22 02:20:24,317 | INFO     | 
[2025-11-22 13:21:03] 2025-11-22 02:20:24,318 | INFO     | architecture information:
[2025-11-22 13:21:03] 2025-11-22 02:20:24,319 | INFO     | executing command: cat /etc/os-release
[2025-11-22 13:21:03] 2025-11-22 02:20:24,337 | INFO     | cat /etc/os-release:
[2025-11-22 13:21:03] NAME="CentOS Linux"
[2025-11-22 13:21:03] VERSION="7 (Core)"
[2025-11-22 13:21:03] ID="centos"
[2025-11-22 13:21:03] ID_LIKE="rhel fedora"
[2025-11-22 13:21:03] VERSION_ID="7"
[2025-11-22 13:21:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 13:21:03] ANSI_COLOR="0;31"
[2025-11-22 13:21:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 13:21:03] HOME_URL="https://www.centos.org/"
[2025-11-22 13:21:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 13:21:03] 
[2025-11-22 13:21:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 13:21:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 13:21:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 13:21:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 13:21:03] 
[2025-11-22 13:21:03] 2025-11-22 02:20:24,337 | INFO     | ***************************************
[2025-11-22 13:21:03] 2025-11-22 02:20:24,840 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-11-22 13:21:03] 2025-11-22 02:20:24,862 | INFO     | sufficient remaining disk space (396420448256 B)
[2025-11-22 13:21:03] 2025-11-22 02:20:24,863 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 13:21:03] 2025-11-22 02:20:24,863 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 13:21:03] 2025-11-22 02:20:24,863 | INFO     | update_server=False
[2025-11-22 13:21:03] 2025-11-22 02:20:24,863 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 13:21:03] 2025-11-22 02:20:24,863 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 13:21:03] 2025-11-22 02:20:24,884 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 13:21:03] 2025-11-22 02:20:24,884 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 13:21:03] 2025-11-22 02:20:24,884 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 13:21:03] 2025-11-22 02:20:24,884 | INFO     | will abort loop
[2025-11-22 13:21:03] 2025-11-22 02:20:24,898 | INFO     | all data control threads have been joined
[2025-11-22 13:21:03] 2025-11-22 02:20:24,908 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 13:21:03] 2025-11-22 02:20:25,868 | INFO     | [job] queue monitor thread has finished
[2025-11-22 13:21:03] 2025-11-22 02:20:25,868 | INFO     | [job] retrieve thread has finished
[2025-11-22 13:21:03] 2025-11-22 02:20:25,890 | INFO     | [job] job monitor thread has finished
[2025-11-22 13:21:03] 2025-11-22 02:20:25,904 | INFO     | [data] control thread has finished
[2025-11-22 13:21:03] 2025-11-22 02:20:26,102 | INFO     | all payload control threads have been joined
[2025-11-22 13:21:03] 2025-11-22 02:20:26,176 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 13:21:03] 2025-11-22 02:20:26,190 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 13:21:03] 2025-11-22 02:20:26,231 | INFO     | [job] validate thread has finished
[2025-11-22 13:21:03] 2025-11-22 02:20:26,333 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 13:21:03] 2025-11-22 02:20:26,341 | INFO     | all job control threads have been joined
[2025-11-22 13:21:03] 2025-11-22 02:20:26,532 | INFO     | [payload] validate_post thread has finished
[2025-11-22 13:21:03] 2025-11-22 02:20:26,914 | INFO     | [data] copytool_out thread has finished
[2025-11-22 13:21:03] 2025-11-22 02:20:27,044 | INFO     | [payload] failed_post thread has finished
[2025-11-22 13:21:03] 2025-11-22 02:20:27,108 | INFO     | [payload] control thread has finished
[2025-11-22 13:21:03] 2025-11-22 02:20:27,267 | INFO     | [data] copytool_in thread has finished
[2025-11-22 13:21:03] 2025-11-22 02:20:27,274 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 13:21:03] 2025-11-22 02:20:27,346 | INFO     | [job] control thread has finished
[2025-11-22 13:21:03] 2025-11-22 02:20:27,939 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 13:21:03] 2025-11-22 02:20:31,945 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 13:21:03] 2025-11-22 02:20:55,323 | INFO     | PID=15907 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 13:21:03] 2025-11-22 02:20:55,324 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 13:21:03] 2025-11-22 02:20:55,324 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 13:21:03] 2025-11-22 02:20:55,324 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 13:21:03] 2025-11-22 02:20:57,673 | INFO     | [monitor] cgroup control has ended
[2025-11-22 13:21:03] 2025-11-22 02:20:58,260 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 138069331154752)>', '<ExcThread(monitor, started 138068543653632)>']
[2025-11-22 13:21:03] 2025-11-22 02:20:58,339 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 13:21:03] 2025-11-22 02:20:58,339 | INFO     | [monitor] control thread has ended
[2025-11-22 13:21:03] 2025-11-22 02:21:03,285 | INFO     | all workflow threads have been joined
[2025-11-22 13:21:03] 2025-11-22 02:21:03,285 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 13:21:03] 2025-11-22 02:21:03,285 | INFO     | traces error code: 0
[2025-11-22 13:21:03] 2025-11-22 02:21:03,285 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 13:21:03] 2025-11-22 02:21:03,366 [wrapper] ==== pilot stdout END ====
[2025-11-22 13:21:03] 2025-11-22 02:21:03,369 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 13:21:03] 2025-11-22 02:21:03,372 [wrapper] pilotpid: 15907
[2025-11-22 13:21:03] 2025-11-22 02:21:03,375 [wrapper] Pilot exit status: 0
[2025-11-22 13:21:03] 2025-11-22 02:21:03,383 [wrapper] pandaids: 6891558291 6891558291
[2025-11-22 13:21:03] 2025-11-22 02:21:03,409 [wrapper] cleanup supervisor_pilot 1263472 15909
[2025-11-22 13:21:03] 2025-11-22 02:21:03,412 [wrapper] Test setup, not cleaning
[2025-11-22 13:21:03] 2025-11-22 02:21:03,415 [wrapper] apfmon messages muted
[2025-11-22 13:21:03] 2025-11-22 02:21:03,417 [wrapper] ==== wrapper stdout END ====
[2025-11-22 13:21:03] 2025-11-22 02:21:03,420 [wrapper] ==== wrapper stderr END ====
[2025-11-22 13:21:03]  *** Error codes and diagnostics ***
[2025-11-22 13:21:03]     "exeErrorCode": 0,
[2025-11-22 13:21:03]     "exeErrorDiag": "",
[2025-11-22 13:21:03]     "pilotErrorCode": 0,
[2025-11-22 13:21:03]     "pilotErrorDiag": "",
[2025-11-22 13:21:03]  *** Listing of results directory ***
[2025-11-22 13:21:03] total 1701284
[2025-11-22 13:21:03] drwx------ 5 boinc boinc      4096 Nov  6 04:16 pilot3
[2025-11-22 13:21:03] -rw-r--r-- 1 boinc boinc    576529 Nov 19 02:15 pilot3.tar.gz
[2025-11-22 13:21:03] -rwx------ 1 boinc boinc     36292 Nov 19 02:20 runpilot2-wrapper.sh
[2025-11-22 13:21:03] -rw-r--r-- 1 boinc boinc      5112 Nov 19 02:20 queuedata.json
[2025-11-22 13:21:03] -rw-r--r-- 1 boinc boinc       100 Nov 22 00:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 13:21:03] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 00:55 run_atlas
[2025-11-22 13:21:03] -rw-r--r-- 1 boinc boinc       105 Nov 22 00:55 job.xml
[2025-11-22 13:21:03] -rw-r--r-- 3 boinc boinc 408581268 Nov 22 00:55 EVNT.47493065._000050.pool.root.1
[2025-11-22 13:21:03] -rw-r--r-- 3 boinc boinc 408581268 Nov 22 00:55 ATLAS.root_0
[2025-11-22 13:21:03] drwxrwx--x 2 boinc boinc      4096 Nov 22 00:55 shared
[2025-11-22 13:21:03] -rw-r--r-- 2 boinc boinc    590092 Nov 22 00:55 input.tar.gz
[2025-11-22 13:21:03] -rw-r--r-- 2 boinc boinc     15120 Nov 22 00:55 start_atlas.sh
[2025-11-22 13:21:03] -rw-r--r-- 1 boinc boinc         0 Nov 22 00:55 boinc_setup_complete
[2025-11-22 13:21:03] -rw-r--r-- 1 boinc boinc         0 Nov 22 00:55 boinc_lockfile
[2025-11-22 13:21:03] -rw-r--r-- 1 boinc boinc      2771 Nov 22 06:49 pandaJob.out
[2025-11-22 13:21:03] -rw-r--r-- 1 boinc boinc      9359 Nov 22 06:49 init_data.xml
[2025-11-22 13:21:03] -rw------- 1 boinc boinc    989798 Nov 22 06:50 agis_schedconf.cvmfs.json
[2025-11-22 13:21:03] -rw-r--r-- 1 boinc boinc       533 Nov 22 13:10 boinc_task_state.xml
[2025-11-22 13:21:03] -rw------- 1 boinc boinc 910256812 Nov 22 13:19 HITS.47493068._000493.pool.root.1
[2025-11-22 13:21:03] -rw------- 1 boinc boinc      1041 Nov 22 13:19 memory_monitor_summary.json
[2025-11-22 13:21:03] -rw------- 1 boinc boinc        96 Nov 22 13:19 pilot_heartbeat.json
[2025-11-22 13:21:03] -rw------- 1 boinc boinc   1526164 Nov 22 13:19 agis_ddmendpoints.agis.ALL.json
[2025-11-22 13:21:03] -rw------- 1 boinc boinc   2142894 Nov 22 13:19 log.47493068._000493.job.log.tgz.1
[2025-11-22 13:21:03] -rw------- 1 boinc boinc      8622 Nov 22 13:20 heartbeat.json
[2025-11-22 13:21:03] -rw-r--r-- 1 boinc boinc        29 Nov 22 13:20 wrapper_checkpoint.txt
[2025-11-22 13:21:03] -rw-r--r-- 1 boinc boinc      8192 Nov 22 13:20 boinc_mmap_file
[2025-11-22 13:21:03] -rw------- 1 boinc boinc      4933 Nov 22 13:21 pilotlog.txt
[2025-11-22 13:21:03] -rw------- 1 boinc boinc   3237640 Nov 22 13:21 log.47493068._000493.job.log.1
[2025-11-22 13:21:03] -rw------- 1 boinc boinc       353 Nov 22 13:21 output.list
[2025-11-22 13:21:03] -rw-r--r-- 1 boinc boinc       620 Nov 22 13:21 runtime_log
[2025-11-22 13:21:03] -rw------- 1 boinc boinc   5396480 Nov 22 13:21 result.tar.gz
[2025-11-22 13:21:03] -rw------- 1 boinc boinc       787 Nov 22 13:21 tyhKDmOgcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWGFKDmrga3Fn.diag
[2025-11-22 13:21:03] -rw-r--r-- 1 boinc boinc      8789 Nov 22 13:21 runtime_log.err
[2025-11-22 13:21:03] -rw-r--r-- 1 boinc boinc     23359 Nov 22 13:21 stderr.txt
[2025-11-22 13:21:03] HITS file was successfully produced:
[2025-11-22 13:21:03] -rw------- 1 boinc boinc 910256812 Nov 22 13:19 shared/HITS.pool.root.1
[2025-11-22 13:21:03]  *** Contents of shared directory: ***
[2025-11-22 13:21:03] total 1293808
[2025-11-22 13:21:03] -rw-r--r-- 3 boinc boinc 408581268 Nov 22 00:55 ATLAS.root_0
[2025-11-22 13:21:03] -rw-r--r-- 2 boinc boinc    590092 Nov 22 00:55 input.tar.gz
[2025-11-22 13:21:03] -rw-r--r-- 2 boinc boinc     15120 Nov 22 00:55 start_atlas.sh
[2025-11-22 13:21:03] -rw------- 1 boinc boinc 910256812 Nov 22 13:19 HITS.pool.root.1
[2025-11-22 13:21:03] -rw------- 1 boinc boinc   5396480 Nov 22 13:21 result.tar.gz
13:21:05 (7485): run_atlas exited; CPU time 267383.253385
13:21:05 (7485): called boinc_finish(0)

</stderr_txt>
]]>

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