Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:13:29 (31939): wrapper (7.7.26015): starting
19:13:29 (31939): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 19:13:29] Arguments: --nthreads 8
[2025-11-20 19:13:29] Threads: 8
[2025-11-20 19:13:29] Checking for CVMFS
[2025-11-20 19:13:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 19:13:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 19:13:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 19:13:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 19:13:32] 2.11.2.0 9859 276932 136408 153088 0 85 17945398 25165825 4632 130560 3 144199504 99.889 81510489 3487 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-20 19:13:32] CVMFS is ok
[2025-11-20 19:13:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 19:13:32] Checking for apptainer binary...
[2025-11-20 19:13:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 19:13:32] Running /usr/bin/apptainer --version
[2025-11-20 19:13:32] apptainer version 1.3.2-1.el7
[2025-11-20 19:13:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 19:13:58] cg-vwn461.simple-grid.lan
[2025-11-20 19:13:58] apptainer works
[2025-11-20 19:13:59] Set ATHENA_PROC_NUMBER=8
[2025-11-20 19:13:59] Set ATHENA_CORE_NUMBER=8
[2025-11-20 19:13:59] Starting ATLAS job with PandaID=6891571642
[2025-11-20 19:13:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 18:55:27]  *** The last 200 lines of the pilot log: ***
[2025-11-21 18:55:27] 2025-11-21 17:54:28,519 | INFO     | time since job start (84998s) is within the limit (172800.0s)
[2025-11-21 18:55:27] 2025-11-21 17:54:28,845 | INFO     | monitor loop #5760: job 0:6891571642 is in state 'finished'
[2025-11-21 18:55:27] 2025-11-21 17:54:28,845 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 18:55:27] 2025-11-21 17:54:30,537 | INFO     | time since job start (85000s) is within the limit (172800.0s)
[2025-11-21 18:55:27] 2025-11-21 17:54:31,356 | INFO     | monitor loop #5761: job 0:6891571642 is in state 'finished'
[2025-11-21 18:55:27] 2025-11-21 17:54:31,356 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 18:55:27] 2025-11-21 17:54:32,544 | INFO     | time since job start (85002s) is within the limit (172800.0s)
[2025-11-21 18:55:27] 2025-11-21 17:54:33,870 | INFO     | monitor loop #5762: job 0:6891571642 is in state 'finished'
[2025-11-21 18:55:27] 2025-11-21 17:54:33,870 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 18:55:27] 2025-11-21 17:54:34,551 | INFO     | time since job start (85004s) is within the limit (172800.0s)
[2025-11-21 18:55:27] 2025-11-21 17:54:36,378 | INFO     | monitor loop #5763: job 0:6891571642 is in state 'finished'
[2025-11-21 18:55:27] 2025-11-21 17:54:36,378 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 18:55:27] 2025-11-21 17:54:36,558 | INFO     | time since job start (85006s) is within the limit (172800.0s)
[2025-11-21 18:55:27] 2025-11-21 17:54:38,045 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 18:55:27] 2025-11-21 17:54:38,048 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2250.0
[2025-11-21 18:55:27] 2025-11-21 17:54:38,050 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-6891571642/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 18:55:27] 2025-11-21 17:54:38,051 | INFO     | extracted standard info from prmon json
[2025-11-21 18:55:27] 2025-11-21 17:54:38,051 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 18:55:27] 2025-11-21 17:54:38,051 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 18:55:27] 2025-11-21 17:54:38,091 | INFO     | fitting pss+swap vs Time
[2025-11-21 18:55:27] 2025-11-21 17:54:38,094 | INFO     | sum of square deviations: 820245133023.4415
[2025-11-21 18:55:27] 2025-11-21 17:54:38,152 | INFO     | sum of deviations: 1950958161492.4602
[2025-11-21 18:55:27] 2025-11-21 17:54:38,153 | INFO     | mean x: 1763705379.2075198
[2025-11-21 18:55:27] 2025-11-21 17:54:38,153 | INFO     | mean y: 2845834.7057122197
[2025-11-21 18:55:27] 2025-11-21 17:54:38,153 | INFO     | intersect: -4192138402.932828
[2025-11-21 18:55:27] 2025-11-21 17:54:38,155 | INFO     | chi2: 30.433294589072435
[2025-11-21 18:55:27] 2025-11-21 17:54:38,157 | INFO     | sum of square deviations: 811381373838.6249
[2025-11-21 18:55:27] 2025-11-21 17:54:38,205 | INFO     | sum of deviations: 2399937992691.177
[2025-11-21 18:55:27] 2025-11-21 17:54:38,205 | INFO     | mean x: 1763705226.7119012
[2025-11-21 18:55:27] 2025-11-21 17:54:38,205 | INFO     | mean y: 2853558.1415094337
[2025-11-21 18:55:27] 2025-11-21 17:54:38,205 | INFO     | intersect: -5213908026.449355
[2025-11-21 18:55:27] 2025-11-21 17:54:38,207 | INFO     | chi2: 27.34625881061793
[2025-11-21 18:55:27] 2025-11-21 17:54:38,207 | INFO     | current chi2=27.34625881061793 (change=10.143613500074213 %)
[2025-11-21 18:55:27] 2025-11-21 17:54:38,207 | INFO     | right removable region: 1377
[2025-11-21 18:55:27] 2025-11-21 17:54:38,209 | INFO     | sum of square deviations: 811380355138.6244
[2025-11-21 18:55:27] 2025-11-21 17:54:38,256 | INFO     | sum of deviations: 1359076746339.9585
[2025-11-21 18:55:27] 2025-11-21 17:54:38,257 | INFO     | mean x: 1763705531.7119012
[2025-11-21 18:55:27] 2025-11-21 17:54:38,257 | INFO     | mean y: 2856016.770682148
[2025-11-21 18:55:27] 2025-11-21 17:54:38,257 | INFO     | intersect: -2951382596.920264
[2025-11-21 18:55:27] 2025-11-21 17:54:38,258 | INFO     | chi2: 25.4804972474289
[2025-11-21 18:55:27] 2025-11-21 17:54:38,259 | INFO     | current chi2=25.4804972474289 (change=16.274272662618383 %)
[2025-11-21 18:55:27] 2025-11-21 17:54:38,259 | INFO     | left removable region: 10
[2025-11-21 18:55:27] 2025-11-21 17:54:38,261 | INFO     | sum of square deviations: 792104350455.8392
[2025-11-21 18:55:27] 2025-11-21 17:54:38,310 | INFO     | sum of deviations: 1372554680141.1194
[2025-11-21 18:55:27] 2025-11-21 17:54:38,311 | INFO     | mean x: 1763705501.2216532
[2025-11-21 18:55:27] 2025-11-21 17:54:38,311 | INFO     | mean y: 2874878.86759327
[2025-11-21 18:55:27] 2025-11-21 17:54:38,311 | INFO     | intersect: -3053265689.858371
[2025-11-21 18:55:27] 2025-11-21 17:54:38,313 | INFO     | chi2: 17.65230926740046
[2025-11-21 18:55:27] 2025-11-21 17:54:38,313 | INFO     | current memory leak: 1.73 B/s (using 1367 data points, chi2=17.65)
[2025-11-21 18:55:27] 2025-11-21 17:54:38,316 | INFO     | could have reported an average CPU frequency of 2250 MHz (47 samples)
[2025-11-21 18:55:27] 2025-11-21 17:54:38,316 | INFO     | ..............................
[2025-11-21 18:55:27] 2025-11-21 17:54:38,316 | INFO     | . Timing measurements:
[2025-11-21 18:55:27] 2025-11-21 17:54:38,316 | INFO     | . get job = 0 s
[2025-11-21 18:55:27] 2025-11-21 17:54:38,316 | INFO     | . initial setup = 15 s
[2025-11-21 18:55:27] 2025-11-21 17:54:38,316 | INFO     | . payload setup = 174 s
[2025-11-21 18:55:27] 2025-11-21 17:54:38,316 | INFO     | . stage-in = 0 s
[2025-11-21 18:55:27] 2025-11-21 17:54:38,316 | INFO     | . payload execution = 84516 s
[2025-11-21 18:55:27] 2025-11-21 17:54:38,316 | INFO     | . stage-out = 6 s
[2025-11-21 18:55:27] 2025-11-21 17:54:38,316 | INFO     | . log creation = 2 s
[2025-11-21 18:55:27] 2025-11-21 17:54:38,317 | INFO     | ..............................
[2025-11-21 18:55:27] 2025-11-21 17:54:38,565 | INFO     | time since job start (85008s) is within the limit (172800.0s)
[2025-11-21 18:55:27] 2025-11-21 17:54:38,778 | INFO     | 
[2025-11-21 18:55:27] 2025-11-21 17:54:38,778 | INFO     | job summary report
[2025-11-21 18:55:27] 2025-11-21 17:54:38,778 | INFO     | --------------------------------------------------
[2025-11-21 18:55:27] 2025-11-21 17:54:38,778 | INFO     | PanDA job id: 6891571642
[2025-11-21 18:55:27] 2025-11-21 17:54:38,778 | INFO     | task id: 47493068
[2025-11-21 18:55:27] 2025-11-21 17:54:38,779 | INFO     | errors: (none)
[2025-11-21 18:55:27] 2025-11-21 17:54:38,779 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 18:55:27] 2025-11-21 17:54:38,779 | INFO     | pilot state: finished 
[2025-11-21 18:55:27] 2025-11-21 17:54:38,779 | INFO     | transexitcode: 0
[2025-11-21 18:55:27] 2025-11-21 17:54:38,779 | INFO     | exeerrorcode: 0
[2025-11-21 18:55:27] 2025-11-21 17:54:38,779 | INFO     | exeerrordiag: 
[2025-11-21 18:55:27] 2025-11-21 17:54:38,779 | INFO     | exitcode: 0
[2025-11-21 18:55:27] 2025-11-21 17:54:38,779 | INFO     | exitmsg: OK
[2025-11-21 18:55:27] 2025-11-21 17:54:38,779 | INFO     | cpuconsumptiontime: 312732 s
[2025-11-21 18:55:27] 2025-11-21 17:54:38,779 | INFO     | nevents: 1000
[2025-11-21 18:55:27] 2025-11-21 17:54:38,780 | INFO     | neventsw: 0
[2025-11-21 18:55:27] 2025-11-21 17:54:38,780 | INFO     | pid: 9967
[2025-11-21 18:55:27] 2025-11-21 17:54:38,780 | INFO     | pgrp: 9967
[2025-11-21 18:55:27] 2025-11-21 17:54:38,780 | INFO     | corecount: 8
[2025-11-21 18:55:27] 2025-11-21 17:54:38,780 | INFO     | event service: False
[2025-11-21 18:55:27] 2025-11-21 17:54:38,780 | INFO     | sizes: {0: 2298626, 1: 2298825, 12: 2298825, 23: 2298853, 33: 2298881, 44: 2298937, 55: 2299093, 66: 2299121, 76: 2299149, 87: 2299205, 98: 2299233, 105: 2299803, 
[2025-11-21 18:55:27] 2025-11-21 17:54:38,780 | INFO     | --------------------------------------------------
[2025-11-21 18:55:27] 2025-11-21 17:54:38,780 | INFO     | 
[2025-11-21 18:55:27] 2025-11-21 17:54:38,780 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-11-21 18:55:27] 2025-11-21 17:54:39,345 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 18:55:27] 2025-11-21 17:54:39,345 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 18:55:27] 2025-11-21 17:54:39,345 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 18:55:27] 2025-11-21 17:54:39,345 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 18:55:27] 2025-11-21 17:54:39,345 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 18:55:27] 2025-11-21 17:54:39,346 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 18:55:27] 2025-11-21 17:54:39,346 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 18:55:27] 2025-11-21 17:54:39,346 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 18:55:27] 2025-11-21 17:54:39,346 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 18:55:27] 2025-11-21 17:54:39,346 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 18:55:27] 2025-11-21 17:54:39,346 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 18:55:27] 2025-11-21 17:54:39,346 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 18:55:27] 2025-11-21 17:54:39,346 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 18:55:27] 2025-11-21 17:54:39,346 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 18:55:27] 2025-11-21 17:54:39,346 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 18:55:27] 2025-11-21 17:54:39,347 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 18:55:27] 2025-11-21 17:54:39,347 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 18:55:27] 2025-11-21 17:54:39,347 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 18:55:27] 2025-11-21 17:54:39,347 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 18:55:27] 2025-11-21 17:54:39,347 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 18:55:27] 2025-11-21 17:54:39,347 | INFO     | job 6891571642 has completed (purged errors)
[2025-11-21 18:55:27] 2025-11-21 17:54:39,347 | INFO     | overall cleanup function is called
[2025-11-21 18:55:27] 2025-11-21 17:54:39,731 | INFO     | PID=3325 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-21 18:55:27] 2025-11-21 17:54:39,732 | INFO     | .. there are 9 such processes running
[2025-11-21 18:55:27] 2025-11-21 17:54:40,367 | INFO     | --- collectZombieJob: --- 10, [9967]
[2025-11-21 18:55:27] 2025-11-21 17:54:40,367 | INFO     | zombie collector waiting for pid 9967
[2025-11-21 18:55:27] 2025-11-21 17:54:40,367 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 18:55:27] 2025-11-21 17:54:40,367 | INFO     | collected zombie processes
[2025-11-21 18:55:27] 2025-11-21 17:54:40,367 | INFO     | will attempt to kill all subprocesses of pid=9967
[2025-11-21 18:55:27] 2025-11-21 17:54:40,474 | INFO     | process IDs to be killed: [9967] (in reverse order)
[2025-11-21 18:55:27] 2025-11-21 17:54:41,431 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 18:55:27] 2025-11-21 17:54:41,431 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 18:55:27] 2025-11-21 17:54:41,435 | INFO     | did not find any defunct processes belonging to 9967
[2025-11-21 18:55:27] 2025-11-21 17:54:41,439 | INFO     | did not find any defunct processes belonging to 9967
[2025-11-21 18:55:27] 2025-11-21 17:54:41,480 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 18:55:27] 2025-11-21 17:54:41,481 | INFO     | ready for new job
[2025-11-21 18:55:27] 2025-11-21 17:54:41,481 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 18:55:27] 2025-11-21 17:54:41,487 | INFO     | ***************************************
[2025-11-21 18:55:27] 2025-11-21 17:54:41,487 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 18:55:27] 2025-11-21 17:54:41,488 | INFO     | ***************************************
[2025-11-21 18:55:27] 2025-11-21 17:54:41,488 | INFO     | 
[2025-11-21 18:55:27] 2025-11-21 17:54:41,488 | INFO     | pilot is running in a VM
[2025-11-21 18:55:27] 2025-11-21 17:54:41,488 | INFO     | architecture information:
[2025-11-21 18:55:27] 2025-11-21 17:54:41,505 | INFO     | executing command: cat /etc/os-release
[2025-11-21 18:55:27] 2025-11-21 17:54:41,807 | INFO     | cat /etc/os-release:
[2025-11-21 18:55:27] NAME="CentOS Linux"
[2025-11-21 18:55:27] VERSION="7 (Core)"
[2025-11-21 18:55:27] ID="centos"
[2025-11-21 18:55:27] ID_LIKE="rhel fedora"
[2025-11-21 18:55:27] VERSION_ID="7"
[2025-11-21 18:55:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 18:55:27] ANSI_COLOR="0;31"
[2025-11-21 18:55:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 18:55:27] HOME_URL="https://www.centos.org/"
[2025-11-21 18:55:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 18:55:27] 
[2025-11-21 18:55:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 18:55:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 18:55:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 18:55:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 18:55:27] 
[2025-11-21 18:55:27] 2025-11-21 17:54:41,808 | INFO     | ***************************************
[2025-11-21 18:55:27] 2025-11-21 17:54:42,311 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-11-21 18:55:27] 2025-11-21 17:54:42,581 | INFO     | sufficient remaining disk space (494846083072 B)
[2025-11-21 18:55:27] 2025-11-21 17:54:42,581 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 18:55:27] 2025-11-21 17:54:42,582 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 18:55:27] 2025-11-21 17:54:42,582 | INFO     | update_server=False
[2025-11-21 18:55:27] 2025-11-21 17:54:42,582 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 18:55:27] 2025-11-21 17:54:42,582 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 18:55:27] 2025-11-21 17:54:42,583 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 18:55:27] 2025-11-21 17:54:42,583 | INFO     | aborting loop
[2025-11-21 18:55:27] 2025-11-21 17:54:42,587 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 18:55:27] 2025-11-21 17:54:42,893 | INFO     | all data control threads have been joined
[2025-11-21 18:55:27] 2025-11-21 17:54:43,043 | INFO     | all payload control threads have been joined
[2025-11-21 18:55:27] 2025-11-21 17:54:43,329 | INFO     | all job control threads have been joined
[2025-11-21 18:55:27] 2025-11-21 17:54:43,447 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 18:55:27] 2025-11-21 17:54:43,588 | INFO     | [job] retrieve thread has finished
[2025-11-21 18:55:27] 2025-11-21 17:54:43,589 | INFO     | [job] job monitor thread has finished
[2025-11-21 18:55:27] 2025-11-21 17:54:43,899 | INFO     | [data] control thread has finished
[2025-11-21 18:55:27] 2025-11-21 17:54:44,049 | INFO     | [payload] control thread has finished
[2025-11-21 18:55:27] 2025-11-21 17:54:44,242 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 18:55:27] 2025-11-21 17:54:44,256 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 18:55:27] 2025-11-21 17:54:44,303 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 18:55:27] 2025-11-21 17:54:44,335 | INFO     | [job] control thread has finished
[2025-11-21 18:55:27] 2025-11-21 17:54:44,349 | INFO     | [job] validate thread has finished
[2025-11-21 18:55:27] 2025-11-21 17:54:44,453 | INFO     | [job] queue monitor thread has finished
[2025-11-21 18:55:27] 2025-11-21 17:54:44,594 | INFO     | [data] copytool_out thread has finished
[2025-11-21 18:55:27] 2025-11-21 17:54:44,627 | INFO     | [data] copytool_in thread has finished
[2025-11-21 18:55:27] 2025-11-21 17:54:44,655 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 18:55:27] 2025-11-21 17:54:44,688 | INFO     | [payload] validate_post thread has finished
[2025-11-21 18:55:27] 2025-11-21 17:54:45,005 | INFO     | [payload] failed_post thread has finished
[2025-11-21 18:55:27] 2025-11-21 17:54:46,600 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 18:55:27] 2025-11-21 17:55:11,896 | INFO     | PID=3325 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-21 18:55:27] 2025-11-21 17:55:11,896 | INFO     | .. there are 9 such processes running
[2025-11-21 18:55:27] 2025-11-21 17:55:11,898 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 18:55:27] 2025-11-21 17:55:11,898 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 18:55:27] 2025-11-21 17:55:11,898 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 18:55:27] 2025-11-21 17:55:18,234 | INFO     | [monitor] cgroup control has ended
[2025-11-21 18:55:27] 2025-11-21 17:55:18,554 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140608997525312)>', '<ExcThread(monitor, started 140608538654464)>']
[2025-11-21 18:55:27] 2025-11-21 17:55:18,940 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 18:55:27] 2025-11-21 17:55:18,940 | INFO     | [monitor] control thread has ended
[2025-11-21 18:55:27] 2025-11-21 17:55:23,580 | INFO     | all workflow threads have been joined
[2025-11-21 18:55:27] 2025-11-21 17:55:23,580 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 18:55:27] 2025-11-21 17:55:23,580 | INFO     | traces error code: 0
[2025-11-21 18:55:27] 2025-11-21 17:55:23,581 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 18:55:27] 2025-11-21 17:55:23,862 [wrapper] ==== pilot stdout END ====
[2025-11-21 18:55:27] 2025-11-21 17:55:23,909 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 18:55:27] 2025-11-21 17:55:23,923 [wrapper] pilotpid: 3325
[2025-11-21 18:55:27] 2025-11-21 17:55:23,975 [wrapper] Pilot exit status: 0
[2025-11-21 18:55:27] 2025-11-21 17:55:24,389 [wrapper] pandaids: 6891571642
[2025-11-21 18:55:27] 2025-11-21 17:55:24,989 [wrapper] cleanup supervisor_pilot  3444 3326
[2025-11-21 18:55:27] 2025-11-21 17:55:25,061 [wrapper] Test setup, not cleaning
[2025-11-21 18:55:27] 2025-11-21 17:55:25,150 [wrapper] apfmon messages muted
[2025-11-21 18:55:27] 2025-11-21 17:55:25,233 [wrapper] ==== wrapper stdout END ====
[2025-11-21 18:55:27] 2025-11-21 17:55:25,325 [wrapper] ==== wrapper stderr END ====
[2025-11-21 18:55:27]  *** Error codes and diagnostics ***
[2025-11-21 18:55:27]     "exeErrorCode": 0,
[2025-11-21 18:55:27]     "exeErrorDiag": "",
[2025-11-21 18:55:27]     "pilotErrorCode": 0,
[2025-11-21 18:55:27]     "pilotErrorDiag": "",
[2025-11-21 18:55:27]  *** Listing of results directory ***
[2025-11-21 18:55:27] total 1338580
[2025-11-21 18:55:27] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:47 pilot3.tar.gz
[2025-11-21 18:55:27] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:54 queuedata.json
[2025-11-21 18:55:27] -rwx------. 1 boinc boinc     36292 Nov 18 16:56 runpilot2-wrapper.sh
[2025-11-21 18:55:27] -rw-r--r--. 1 boinc boinc       100 Nov 20 19:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 18:55:27] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 19:13 run_atlas
[2025-11-21 18:55:27] -rw-r--r--. 1 boinc boinc       105 Nov 20 19:13 job.xml
[2025-11-21 18:55:27] -rw-r--r--. 1 boinc boinc      6391 Nov 20 19:13 init_data.xml
[2025-11-21 18:55:27] -rw-r--r--. 2 boinc boinc 411129242 Nov 20 19:13 EVNT.47493065._000293.pool.root.1
[2025-11-21 18:55:27] -rw-r--r--. 2 boinc boinc     15120 Nov 20 19:13 start_atlas.sh
[2025-11-21 18:55:27] drwxrwx--x. 2 boinc boinc        68 Nov 20 19:13 shared
[2025-11-21 18:55:27] -rw-r--r--. 2 boinc boinc    590099 Nov 20 19:13 input.tar.gz
[2025-11-21 18:55:27] -rw-r--r--. 1 boinc boinc         0 Nov 20 19:13 boinc_lockfile
[2025-11-21 18:55:27] -rw-r--r--. 1 boinc boinc      2773 Nov 20 19:13 pandaJob.out
[2025-11-21 18:55:27] -rw-------. 1 boinc boinc    989440 Nov 20 19:17 agis_schedconf.cvmfs.json
[2025-11-21 18:55:27] drwx------. 5 boinc boinc      4096 Nov 20 19:17 pilot3
[2025-11-21 18:55:27] -rw-r--r--. 1 boinc boinc       533 Nov 21 18:26 boinc_task_state.xml
[2025-11-21 18:55:27] -rw-------. 1 boinc boinc 927931921 Nov 21 18:51 HITS.47493068._002925.pool.root.1
[2025-11-21 18:55:27] -rw-------. 1 boinc boinc      1033 Nov 21 18:52 memory_monitor_summary.json
[2025-11-21 18:55:27] -rw-------. 1 boinc boinc   1526164 Nov 21 18:52 agis_ddmendpoints.agis.ALL.json
[2025-11-21 18:55:27] -rw-------. 1 boinc boinc   2489485 Nov 21 18:52 log.47493068._002925.job.log.tgz.1
[2025-11-21 18:55:27] -rw-------. 1 boinc boinc      8633 Nov 21 18:54 heartbeat.json
[2025-11-21 18:55:27] -rw-r--r--. 1 boinc boinc      8192 Nov 21 18:55 boinc_mmap_file
[2025-11-21 18:55:27] -rw-r--r--. 1 boinc boinc        29 Nov 21 18:55 wrapper_checkpoint.txt
[2025-11-21 18:55:27] -rw-------. 1 boinc boinc        95 Nov 21 18:55 pilot_heartbeat.json
[2025-11-21 18:55:27] -rw-------. 1 boinc boinc      4884 Nov 21 18:55 pilotlog.txt
[2025-11-21 18:55:27] -rw-------. 1 boinc boinc  11380301 Nov 21 18:55 log.47493068._002925.job.log.1
[2025-11-21 18:55:27] -rw-------. 1 boinc boinc       353 Nov 21 18:55 output.list
[2025-11-21 18:55:27] -rw-r--r--. 1 boinc boinc       620 Nov 21 18:55 runtime_log
[2025-11-21 18:55:27] -rw-------. 1 boinc boinc  13885440 Nov 21 18:55 result.tar.gz
[2025-11-21 18:55:27] -rw-r--r--. 1 boinc boinc      8717 Nov 21 18:55 runtime_log.err
[2025-11-21 18:55:27] -rw-------. 1 boinc boinc       662 Nov 21 18:55 EEKMDmXFdf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmHQFKDm9xSEkn.diag
[2025-11-21 18:55:27] -rw-r--r--. 1 boinc boinc     21432 Nov 21 18:55 stderr.txt
[2025-11-21 18:55:27] HITS file was successfully produced:
[2025-11-21 18:55:27] -rw-------. 1 boinc boinc 927931921 Nov 21 18:51 shared/HITS.pool.root.1
[2025-11-21 18:55:27]  *** Contents of shared directory: ***
[2025-11-21 18:55:27] total 1321836
[2025-11-21 18:55:27] -rw-r--r--. 2 boinc boinc 411129242 Nov 20 19:13 ATLAS.root_0
[2025-11-21 18:55:27] -rw-r--r--. 2 boinc boinc     15120 Nov 20 19:13 start_atlas.sh
[2025-11-21 18:55:27] -rw-r--r--. 2 boinc boinc    590099 Nov 20 19:13 input.tar.gz
[2025-11-21 18:55:27] -rw-------. 1 boinc boinc 927931921 Nov 21 18:51 HITS.pool.root.1
[2025-11-21 18:55:27] -rw-------. 1 boinc boinc  13885440 Nov 21 18:55 result.tar.gz
18:55:28 (31939): run_atlas exited; CPU time 313177.837513
18:55:28 (31939): called boinc_finish(0)

</stderr_txt>
]]>

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