Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:38:21 (6985): wrapper (7.7.26015): starting
19:38:21 (6985): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 19:38:21] Arguments: --nthreads 8
[2025-11-19 19:38:21] Threads: 8
[2025-11-19 19:38:21] Checking for CVMFS
[2025-11-19 19:38:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 19:38:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 19:38:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 19:38:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 19:38:23] 2.11.2.0 9859 275516 139832 153052 1 294 17448618 25165824 4631 130560 3 143578961 99.889 81343707 3498 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-19 19:38:23] CVMFS is ok
[2025-11-19 19:38:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 19:38:23] Checking for apptainer binary...
[2025-11-19 19:38:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 19:38:23] Running /usr/bin/apptainer --version
[2025-11-19 19:38:23] apptainer version 1.3.2-1.el7
[2025-11-19 19:38:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 19:38:31] cg-vwn461.simple-grid.lan
[2025-11-19 19:38:31] apptainer works
[2025-11-19 19:38:31] Set ATHENA_PROC_NUMBER=8
[2025-11-19 19:38:31] Set ATHENA_CORE_NUMBER=8
[2025-11-19 19:38:31] Starting ATLAS job with PandaID=6891571641
[2025-11-19 19:38:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 19:13:20]  *** The last 200 lines of the pilot log: ***
[2025-11-20 19:13:20] 2025-11-20 18:12:16,970 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 19:13:20] 2025-11-20 18:12:17,778 | INFO     | time since job start (84634s) is within the limit (172800.0s)
[2025-11-20 19:13:20] 2025-11-20 18:12:19,476 | INFO     | monitor loop #5669: job 0:6891571641 is in state 'finished'
[2025-11-20 19:13:20] 2025-11-20 18:12:19,476 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 19:13:20] 2025-11-20 18:12:19,785 | INFO     | time since job start (84636s) is within the limit (172800.0s)
[2025-11-20 19:13:20] 2025-11-20 18:12:21,792 | INFO     | time since job start (84638s) is within the limit (172800.0s)
[2025-11-20 19:13:20] 2025-11-20 18:12:21,983 | INFO     | monitor loop #5670: job 0:6891571641 is in state 'finished'
[2025-11-20 19:13:20] 2025-11-20 18:12:21,984 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 19:13:20] 2025-11-20 18:12:23,806 | INFO     | time since job start (84640s) is within the limit (172800.0s)
[2025-11-20 19:13:20] 2025-11-20 18:12:24,490 | INFO     | monitor loop #5671: job 0:6891571641 is in state 'finished'
[2025-11-20 19:13:20] 2025-11-20 18:12:24,490 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 19:13:20] 2025-11-20 18:12:25,813 | INFO     | time since job start (84642s) is within the limit (172800.0s)
[2025-11-20 19:13:20] 2025-11-20 18:12:27,001 | INFO     | monitor loop #5672: job 0:6891571641 is in state 'finished'
[2025-11-20 19:13:20] 2025-11-20 18:12:27,001 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 19:13:20] 2025-11-20 18:12:27,286 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 19:13:20] 2025-11-20 18:12:27,287 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2250.0
[2025-11-20 19:13:20] 2025-11-20 18:12:27,289 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-6891571641/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 19:13:20] 2025-11-20 18:12:27,290 | INFO     | extracted standard info from prmon json
[2025-11-20 19:13:20] 2025-11-20 18:12:27,290 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 19:13:20] 2025-11-20 18:12:27,290 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 19:13:20] 2025-11-20 18:12:27,316 | INFO     | fitting pss+swap vs Time
[2025-11-20 19:13:20] 2025-11-20 18:12:27,319 | INFO     | sum of square deviations: 823811958532.1489
[2025-11-20 19:13:20] 2025-11-20 18:12:27,370 | INFO     | sum of deviations: 2080491157613.6929
[2025-11-20 19:13:20] 2025-11-20 18:12:27,371 | INFO     | mean x: 1763619989.1819494
[2025-11-20 19:13:20] 2025-11-20 18:12:27,371 | INFO     | mean y: 2854752.7075812276
[2025-11-20 19:13:20] 2025-11-20 18:12:27,371 | INFO     | intersect: -4451069173.598974
[2025-11-20 19:13:20] 2025-11-20 18:12:27,372 | INFO     | chi2: 17.07343149495648
[2025-11-20 19:13:20] 2025-11-20 18:12:27,374 | INFO     | sum of square deviations: 814922486475.1384
[2025-11-20 19:13:20] 2025-11-20 18:12:27,434 | INFO     | sum of deviations: 2529477621343.087
[2025-11-20 19:13:20] 2025-11-20 18:12:27,435 | INFO     | mean x: 1763619836.6862319
[2025-11-20 19:13:20] 2025-11-20 18:12:27,435 | INFO     | mean y: 2862453.552173913
[2025-11-20 19:13:20] 2025-11-20 18:12:27,435 | INFO     | intersect: -5471323108.255452
[2025-11-20 19:13:20] 2025-11-20 18:12:27,436 | INFO     | chi2: 13.94471294813534
[2025-11-20 19:13:20] 2025-11-20 18:12:27,437 | INFO     | current chi2=13.94471294813534 (change=18.325071604647075 %)
[2025-11-20 19:13:20] 2025-11-20 18:12:27,437 | INFO     | right removable region: 1379
[2025-11-20 19:13:20] 2025-11-20 18:12:27,439 | INFO     | sum of square deviations: 814921487905.1389
[2025-11-20 19:13:20] 2025-11-20 18:12:27,498 | INFO     | sum of deviations: 1626432540866.282
[2025-11-20 19:13:20] 2025-11-20 18:12:27,499 | INFO     | mean x: 1763620141.6862319
[2025-11-20 19:13:20] 2025-11-20 18:12:27,499 | INFO     | mean y: 2862538.40942029
[2025-11-20 19:13:20] 2025-11-20 18:12:27,499 | INFO     | intersect: -3516997019.5208864
[2025-11-20 19:13:20] 2025-11-20 18:12:27,500 | INFO     | chi2: 14.275816261524131
[2025-11-20 19:13:20] 2025-11-20 18:12:27,500 | INFO     | current chi2=14.275816261524131 (change=16.3857818169638 %)
[2025-11-20 19:13:20] 2025-11-20 18:12:27,501 | INFO     | left removable region: 10
[2025-11-20 19:13:20] 2025-11-20 18:12:27,502 | INFO     | sum of square deviations: 795589513927.7043
[2025-11-20 19:13:20] 2025-11-20 18:12:27,546 | INFO     | sum of deviations: 2034909737952.0527
[2025-11-20 19:13:20] 2025-11-20 18:12:27,546 | INFO     | mean x: 1763620111.193572
[2025-11-20 19:13:20] 2025-11-20 18:12:27,547 | INFO     | mean y: 2874174.2790357927
[2025-11-20 19:13:20] 2025-11-20 18:12:27,547 | INFO     | intersect: -4508004457.841798
[2025-11-20 19:13:20] 2025-11-20 18:12:27,548 | INFO     | chi2: 10.260879597800528
[2025-11-20 19:13:20] 2025-11-20 18:12:27,548 | INFO     | current memory leak: 2.56 B/s (using 1369 data points, chi2=10.26)
[2025-11-20 19:13:20] 2025-11-20 18:12:27,551 | INFO     | could have reported an average CPU frequency of 2250 MHz (47 samples)
[2025-11-20 19:13:20] 2025-11-20 18:12:27,551 | INFO     | ..............................
[2025-11-20 19:13:20] 2025-11-20 18:12:27,552 | INFO     | . Timing measurements:
[2025-11-20 19:13:20] 2025-11-20 18:12:27,552 | INFO     | . get job = 0 s
[2025-11-20 19:13:20] 2025-11-20 18:12:27,552 | INFO     | . initial setup = 2 s
[2025-11-20 19:13:20] 2025-11-20 18:12:27,552 | INFO     | . payload setup = 14 s
[2025-11-20 19:13:20] 2025-11-20 18:12:27,552 | INFO     | . stage-in = 0 s
[2025-11-20 19:13:20] 2025-11-20 18:12:27,552 | INFO     | . payload execution = 84484 s
[2025-11-20 19:13:20] 2025-11-20 18:12:27,552 | INFO     | . stage-out = 6 s
[2025-11-20 19:13:20] 2025-11-20 18:12:27,552 | INFO     | . log creation = 2 s
[2025-11-20 19:13:20] 2025-11-20 18:12:27,552 | INFO     | ..............................
[2025-11-20 19:13:20] 2025-11-20 18:12:27,679 | INFO     | 
[2025-11-20 19:13:20] 2025-11-20 18:12:27,679 | INFO     | job summary report
[2025-11-20 19:13:20] 2025-11-20 18:12:27,679 | INFO     | --------------------------------------------------
[2025-11-20 19:13:20] 2025-11-20 18:12:27,679 | INFO     | PanDA job id: 6891571641
[2025-11-20 19:13:20] 2025-11-20 18:12:27,679 | INFO     | task id: 47493068
[2025-11-20 19:13:20] 2025-11-20 18:12:27,680 | INFO     | errors: (none)
[2025-11-20 19:13:20] 2025-11-20 18:12:27,680 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 19:13:20] 2025-11-20 18:12:27,680 | INFO     | pilot state: finished 
[2025-11-20 19:13:20] 2025-11-20 18:12:27,680 | INFO     | transexitcode: 0
[2025-11-20 19:13:20] 2025-11-20 18:12:27,680 | INFO     | exeerrorcode: 0
[2025-11-20 19:13:20] 2025-11-20 18:12:27,680 | INFO     | exeerrordiag: 
[2025-11-20 19:13:20] 2025-11-20 18:12:27,680 | INFO     | exitcode: 0
[2025-11-20 19:13:20] 2025-11-20 18:12:27,680 | INFO     | exitmsg: OK
[2025-11-20 19:13:20] 2025-11-20 18:12:27,680 | INFO     | cpuconsumptiontime: 314142 s
[2025-11-20 19:13:20] 2025-11-20 18:12:27,681 | INFO     | nevents: 1000
[2025-11-20 19:13:20] 2025-11-20 18:12:27,681 | INFO     | neventsw: 0
[2025-11-20 19:13:20] 2025-11-20 18:12:27,681 | INFO     | pid: 17419
[2025-11-20 19:13:20] 2025-11-20 18:12:27,681 | INFO     | pgrp: 17419
[2025-11-20 19:13:20] 2025-11-20 18:12:27,681 | INFO     | corecount: 8
[2025-11-20 19:13:20] 2025-11-20 18:12:27,681 | INFO     | event service: False
[2025-11-20 19:13:20] 2025-11-20 18:12:27,681 | INFO     | sizes: {0: 2296372, 1: 2297229, 2: 2297229, 12: 2287390, 13: 2297547, 23: 2297603, 84503: 2357205, 84509: 2367797, 84511: 2367853, 84613: 2368099}
[2025-11-20 19:13:20] 2025-11-20 18:12:27,681 | INFO     | --------------------------------------------------
[2025-11-20 19:13:20] 2025-11-20 18:12:27,681 | INFO     | 
[2025-11-20 19:13:20] 2025-11-20 18:12:27,682 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-11-20 19:13:20] 2025-11-20 18:12:27,820 | INFO     | time since job start (84644s) is within the limit (172800.0s)
[2025-11-20 19:13:20] 2025-11-20 18:12:28,171 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 19:13:20] 2025-11-20 18:12:28,172 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 19:13:20] 2025-11-20 18:12:28,172 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 19:13:20] 2025-11-20 18:12:28,172 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 19:13:20] 2025-11-20 18:12:28,172 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 19:13:20] 2025-11-20 18:12:28,172 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 19:13:20] 2025-11-20 18:12:28,172 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 19:13:20] 2025-11-20 18:12:28,172 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 19:13:20] 2025-11-20 18:12:28,172 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 19:13:20] 2025-11-20 18:12:28,172 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 19:13:20] 2025-11-20 18:12:28,172 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 19:13:20] 2025-11-20 18:12:28,173 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 19:13:20] 2025-11-20 18:12:28,173 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 19:13:20] 2025-11-20 18:12:28,173 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 19:13:20] 2025-11-20 18:12:28,173 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 19:13:20] 2025-11-20 18:12:28,173 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 19:13:20] 2025-11-20 18:12:28,173 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 19:13:20] 2025-11-20 18:12:28,173 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 19:13:20] 2025-11-20 18:12:28,173 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 19:13:20] 2025-11-20 18:12:28,173 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 19:13:20] 2025-11-20 18:12:28,174 | INFO     | job 6891571641 has completed (purged errors)
[2025-11-20 19:13:20] 2025-11-20 18:12:28,174 | INFO     | overall cleanup function is called
[2025-11-20 19:13:20] 2025-11-20 18:12:29,205 | INFO     | --- collectZombieJob: --- 10, [17419]
[2025-11-20 19:13:20] 2025-11-20 18:12:29,205 | INFO     | zombie collector waiting for pid 17419
[2025-11-20 19:13:20] 2025-11-20 18:12:29,205 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 19:13:20] 2025-11-20 18:12:29,205 | INFO     | collected zombie processes
[2025-11-20 19:13:20] 2025-11-20 18:12:29,206 | INFO     | will attempt to kill all subprocesses of pid=17419
[2025-11-20 19:13:20] 2025-11-20 18:12:29,346 | INFO     | process IDs to be killed: [17419] (in reverse order)
[2025-11-20 19:13:20] 2025-11-20 18:12:29,906 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 19:13:20] 2025-11-20 18:12:29,907 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 19:13:20] 2025-11-20 18:12:29,915 | INFO     | did not find any defunct processes belonging to 17419
[2025-11-20 19:13:20] 2025-11-20 18:12:29,919 | INFO     | did not find any defunct processes belonging to 17419
[2025-11-20 19:13:20] 2025-11-20 18:12:29,966 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 19:13:20] 2025-11-20 18:12:29,967 | INFO     | ready for new job
[2025-11-20 19:13:20] 2025-11-20 18:12:29,967 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 19:13:20] 2025-11-20 18:12:29,975 | INFO     | ***************************************
[2025-11-20 19:13:20] 2025-11-20 18:12:29,975 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 19:13:20] 2025-11-20 18:12:29,975 | INFO     | ***************************************
[2025-11-20 19:13:20] 2025-11-20 18:12:29,975 | INFO     | 
[2025-11-20 19:13:20] 2025-11-20 18:12:29,976 | INFO     | pilot is running in a VM
[2025-11-20 19:13:20] 2025-11-20 18:12:29,976 | INFO     | architecture information:
[2025-11-20 19:13:20] 2025-11-20 18:12:29,990 | INFO     | executing command: cat /etc/os-release
[2025-11-20 19:13:20] 2025-11-20 18:12:30,188 | INFO     | cat /etc/os-release:
[2025-11-20 19:13:20] NAME="CentOS Linux"
[2025-11-20 19:13:20] VERSION="7 (Core)"
[2025-11-20 19:13:20] ID="centos"
[2025-11-20 19:13:20] ID_LIKE="rhel fedora"
[2025-11-20 19:13:20] VERSION_ID="7"
[2025-11-20 19:13:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 19:13:20] ANSI_COLOR="0;31"
[2025-11-20 19:13:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 19:13:20] HOME_URL="https://www.centos.org/"
[2025-11-20 19:13:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 19:13:20] 
[2025-11-20 19:13:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 19:13:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 19:13:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 19:13:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 19:13:20] 
[2025-11-20 19:13:20] 2025-11-20 18:12:30,189 | INFO     | ***************************************
[2025-11-20 19:13:20] 2025-11-20 18:12:30,693 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-11-20 19:13:20] 2025-11-20 18:12:30,895 | INFO     | sufficient remaining disk space (495073624064 B)
[2025-11-20 19:13:20] 2025-11-20 18:12:30,895 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 19:13:20] 2025-11-20 18:12:30,895 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 19:13:20] 2025-11-20 18:12:30,895 | INFO     | update_server=False
[2025-11-20 19:13:20] 2025-11-20 18:12:30,895 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 19:13:20] 2025-11-20 18:12:30,897 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 19:13:20] 2025-11-20 18:12:30,897 | INFO     | aborting loop
[2025-11-20 19:13:20] 2025-11-20 18:12:30,904 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 19:13:20] 2025-11-20 18:12:31,279 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 19:13:20] 2025-11-20 18:12:31,312 | INFO     | all job control threads have been joined
[2025-11-20 19:13:20] 2025-11-20 18:12:31,435 | INFO     | all data control threads have been joined
[2025-11-20 19:13:20] 2025-11-20 18:12:31,545 | INFO     | all payload control threads have been joined
[2025-11-20 19:13:20] 2025-11-20 18:12:31,902 | INFO     | [job] retrieve thread has finished
[2025-11-20 19:13:20] 2025-11-20 18:12:31,903 | INFO     | [job] job monitor thread has finished
[2025-11-20 19:13:20] 2025-11-20 18:12:31,917 | INFO     | [data] copytool_in thread has finished
[2025-11-20 19:13:20] 2025-11-20 18:12:31,918 | INFO     | [payload] failed_post thread has finished
[2025-11-20 19:13:20] 2025-11-20 18:12:32,318 | INFO     | [job] control thread has finished
[2025-11-20 19:13:20] 2025-11-20 18:12:32,440 | INFO     | [data] control thread has finished
[2025-11-20 19:13:20] 2025-11-20 18:12:32,551 | INFO     | [payload] control thread has finished
[2025-11-20 19:13:20] 2025-11-20 18:12:32,694 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 19:13:20] 2025-11-20 18:12:32,852 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 19:13:20] 2025-11-20 18:12:32,871 | INFO     | [job] validate thread has finished
[2025-11-20 19:13:20] 2025-11-20 18:12:32,911 | INFO     | [data] copytool_out thread has finished
[2025-11-20 19:13:20] 2025-11-20 18:12:32,963 | INFO     | [payload] validate_post thread has finished
[2025-11-20 19:13:20] 2025-11-20 18:12:33,081 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 19:13:20] 2025-11-20 18:12:33,113 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 19:13:20] 2025-11-20 18:12:33,226 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 19:13:20] 2025-11-20 18:12:33,700 | INFO     | [job] queue monitor thread has finished
[2025-11-20 19:13:20] 2025-11-20 18:12:35,287 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 19:13:20] 2025-11-20 18:12:48,256 [wrapper] supervise_pilot (15 min periods counter: 95)
[2025-11-20 19:13:20] 2025-11-20 18:13:00,995 | INFO     | PID=10837 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 19:13:20] 2025-11-20 18:13:00,995 | INFO     | .. there are 9 such processes running
[2025-11-20 19:13:20] 2025-11-20 18:13:00,996 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 19:13:20] 2025-11-20 18:13:00,996 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 19:13:20] 2025-11-20 18:13:00,996 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 19:13:20] 2025-11-20 18:13:10,651 | INFO     | [monitor] cgroup control has ended
[2025-11-20 19:13:20] 2025-11-20 18:13:11,658 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139642159941440)>', '<ExcThread(monitor, started 139641567033088)>']
[2025-11-20 19:13:20] 2025-11-20 18:13:12,061 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 19:13:20] 2025-11-20 18:13:12,061 | INFO     | [monitor] control thread has ended
[2025-11-20 19:13:20] 2025-11-20 18:13:16,684 | INFO     | all workflow threads have been joined
[2025-11-20 19:13:20] 2025-11-20 18:13:16,684 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 19:13:20] 2025-11-20 18:13:16,684 | INFO     | traces error code: 0
[2025-11-20 19:13:20] 2025-11-20 18:13:16,685 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 19:13:20] 2025-11-20 18:13:17,144 [wrapper] ==== pilot stdout END ====
[2025-11-20 19:13:20] 2025-11-20 18:13:17,239 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 19:13:20] 2025-11-20 18:13:17,355 [wrapper] pilotpid: 10837
[2025-11-20 19:13:20] 2025-11-20 18:13:17,455 [wrapper] Pilot exit status: 0
[2025-11-20 19:13:20] 2025-11-20 18:13:17,843 [wrapper] pandaids: 6891571641
[2025-11-20 19:13:20] 2025-11-20 18:13:18,690 [wrapper] cleanup supervisor_pilot 31880 10838
[2025-11-20 19:13:20] 2025-11-20 18:13:18,730 [wrapper] Test setup, not cleaning
[2025-11-20 19:13:20] 2025-11-20 18:13:18,766 [wrapper] apfmon messages muted
[2025-11-20 19:13:20] 2025-11-20 18:13:18,836 [wrapper] ==== wrapper stdout END ====
[2025-11-20 19:13:20] 2025-11-20 18:13:18,882 [wrapper] ==== wrapper stderr END ====
[2025-11-20 19:13:20]  *** Error codes and diagnostics ***
[2025-11-20 19:13:20]     "exeErrorCode": 0,
[2025-11-20 19:13:20]     "exeErrorDiag": "",
[2025-11-20 19:13:20]     "pilotErrorCode": 0,
[2025-11-20 19:13:20]     "pilotErrorDiag": "",
[2025-11-20 19:13:20]  *** Listing of results directory ***
[2025-11-20 19:13:20] total 1335744
[2025-11-20 19:13:20] -rw-r--r--. 1 boinc boinc    576529 Nov 18 16:47 pilot3.tar.gz
[2025-11-20 19:13:20] -rw-r--r--. 1 boinc boinc      5112 Nov 18 16:54 queuedata.json
[2025-11-20 19:13:20] -rwx------. 1 boinc boinc     36292 Nov 18 16:56 runpilot2-wrapper.sh
[2025-11-20 19:13:20] -rw-r--r--. 1 boinc boinc       100 Nov 19 19:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 19:13:20] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 19:38 run_atlas
[2025-11-20 19:13:20] -rw-r--r--. 1 boinc boinc       105 Nov 19 19:38 job.xml
[2025-11-20 19:13:20] -rw-r--r--. 1 boinc boinc      6390 Nov 19 19:38 init_data.xml
[2025-11-20 19:13:20] -rw-r--r--. 2 boinc boinc 411129242 Nov 19 19:38 EVNT.47493065._000293.pool.root.1
[2025-11-20 19:13:20] -rw-r--r--. 2 boinc boinc     15120 Nov 19 19:38 start_atlas.sh
[2025-11-20 19:13:20] drwxrwx--x. 2 boinc boinc        68 Nov 19 19:38 shared
[2025-11-20 19:13:20] -rw-r--r--. 2 boinc boinc    590098 Nov 19 19:38 input.tar.gz
[2025-11-20 19:13:20] -rw-r--r--. 1 boinc boinc         0 Nov 19 19:38 boinc_lockfile
[2025-11-20 19:13:20] -rw-r--r--. 1 boinc boinc      2773 Nov 19 19:38 pandaJob.out
[2025-11-20 19:13:20] -rw-------. 1 boinc boinc    989434 Nov 19 19:41 agis_schedconf.cvmfs.json
[2025-11-20 19:13:20] drwx------. 5 boinc boinc      4096 Nov 19 19:41 pilot3
[2025-11-20 19:13:20] -rw-r--r--. 1 boinc boinc       533 Nov 20 18:42 boinc_task_state.xml
[2025-11-20 19:13:20] -rw-------. 1 boinc boinc 925201612 Nov 20 19:08 HITS.47493068._002924.pool.root.1
[2025-11-20 19:13:20] -rw-------. 1 boinc boinc      1033 Nov 20 19:10 memory_monitor_summary.json
[2025-11-20 19:13:20] -rw-------. 1 boinc boinc   1526164 Nov 20 19:10 agis_ddmendpoints.agis.ALL.json
[2025-11-20 19:13:20] -rw-------. 1 boinc boinc   2469564 Nov 20 19:10 log.47493068._002924.job.log.tgz.1
[2025-11-20 19:13:20] -rw-------. 1 boinc boinc        95 Nov 20 19:12 pilot_heartbeat.json
[2025-11-20 19:13:20] -rw-------. 1 boinc boinc      7955 Nov 20 19:12 heartbeat.json
[2025-11-20 19:13:20] -rw-r--r--. 1 boinc boinc      8192 Nov 20 19:12 boinc_mmap_file
[2025-11-20 19:13:20] -rw-r--r--. 1 boinc boinc        29 Nov 20 19:12 wrapper_checkpoint.txt
[2025-11-20 19:13:20] -rw-------. 1 boinc boinc      4885 Nov 20 19:13 pilotlog.txt
[2025-11-20 19:13:20] -rw-------. 1 boinc boinc  11311519 Nov 20 19:13 log.47493068._002924.job.log.1
[2025-11-20 19:13:20] -rw-------. 1 boinc boinc       353 Nov 20 19:13 output.list
[2025-11-20 19:13:20] -rw-r--r--. 1 boinc boinc       620 Nov 20 19:13 runtime_log
[2025-11-20 19:13:20] -rw-------. 1 boinc boinc  13803520 Nov 20 19:13 result.tar.gz
[2025-11-20 19:13:20] -rw-r--r--. 1 boinc boinc      8717 Nov 20 19:13 runtime_log.err
[2025-11-20 19:13:20] -rw-------. 1 boinc boinc       662 Nov 20 19:13 phIMDmXFdf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGQFKDmAWv1Lm.diag
[2025-11-20 19:13:20] -rw-r--r--. 1 boinc boinc     21403 Nov 20 19:13 stderr.txt
[2025-11-20 19:13:20] HITS file was successfully produced:
[2025-11-20 19:13:20] -rw-------. 1 boinc boinc 925201612 Nov 20 19:08 shared/HITS.pool.root.1
[2025-11-20 19:13:20]  *** Contents of shared directory: ***
[2025-11-20 19:13:20] total 1319092
[2025-11-20 19:13:20] -rw-r--r--. 2 boinc boinc 411129242 Nov 19 19:38 ATLAS.root_0
[2025-11-20 19:13:20] -rw-r--r--. 2 boinc boinc     15120 Nov 19 19:38 start_atlas.sh
[2025-11-20 19:13:20] -rw-r--r--. 2 boinc boinc    590098 Nov 19 19:38 input.tar.gz
[2025-11-20 19:13:20] -rw-------. 1 boinc boinc 925201612 Nov 20 19:08 HITS.pool.root.1
[2025-11-20 19:13:20] -rw-------. 1 boinc boinc  13803520 Nov 20 19:13 result.tar.gz
19:13:22 (6985): run_atlas exited; CPU time 314567.591910
19:13:22 (6985): called boinc_finish(0)

</stderr_txt>
]]>

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